Publications:

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Predicting the antigenic evolution of SARS-COV-2 with deep learning.

Nature Communications

Han, Wenkai W; Chen, Ningning N; Xu, Xinzhou X; Sahil, Adil A; Zhou, Juexiao J; Li, Zhongxiao Z; Zhong, Huawen H; Gao, Elva E; Zhang, Ruochi R; Wang, Yu Y; Sun, Shiwei S; Cheung, Peter Pak-Hang PP; Gao, Xin X

Publication Date: 2023-06-13

Variant appearance in text: 225: F490L

PubMed Link: 37311849

Variant Present in the following documents:

• 41467_2023_39199_MOESM4_ESM.xlsx, sheet 11

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Recurrent SARS-CoV-2 mutations in immunodeficient patients.

Virus Evolution

Wilkinson, S A J SAJ; Richter, Alex A; Casey, Anna A; Osman, Husam H; Mirza, Jeremy D JD; Stockton, Joanne J; Quick, Josh J; Ratcliffe, Liz L; Sparks, Natalie N; Cumley, Nicola N; Poplawski, Radoslaw R; Nicholls, Samuel N SN; Kele, Beatrix B; Harris, Kathryn K; Peacock, Thomas P TP; Loman, Nicholas J NJ

Publication Date: 2022-07

Variant appearance in text: 225: F490L

PubMed Link: 35996593

Variant Present in the following documents:

• veac050.pdf

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Potent and broad neutralization of SARS-CoV-2 variants of concern (VOCs) including omicron sub-lineages BA.1 and BA.2 by biparatopic human VH domains.

Iscience

Chen, Chuan C; Saville, James W JW; Marti, Michelle M MM; Schäfer, Alexandra A; Cheng, Mary Hongying MH; Mannar, Dhiraj D; Zhu, Xing X; Berezuk, Alison M AM; Banerjee, Anupam A; Sobolewski, Michele D MD; Kim, Andrew A; Treat, Benjamin R BR; Da Silva Castanha, Priscila Mayrelle PM; Enick, Nathan N; McCormick, Kevin D KD; Liu, Xianglei X; Adams, Cynthia C; Hines, Margaret Grace MG; Sun, Zehua Z; Chen, Weizao W; Jacobs, Jana L JL; Barratt-Boyes, Simon M SM; Mellors, John W JW; Baric, Ralph S RS; Bahar, Ivet I; Dimitrov, Dimiter S DS; Subramaniam, Sriram S; Martinez, David R DR; Li, Wei W

Publication Date: 2022-08-19

Variant appearance in text: 225: F490L

PubMed Link: 35875685

Variant Present in the following documents:

• main.pdf

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Ultrapotent neutralizing antibodies against SARS-CoV-2 with a high degree of mutation resistance.

The Journal Of Clinical Investigation

Zou, Jia J; Li, Li L; Zheng, Peiyi P; Liang, Wenhua W; Hu, Siyi S; Zhou, Shuaixiang S; Wang, Yanqun Y; Zhao, Jincun J; Yuan, Daopeng D; Liu, Lu L; Wu, Dongdong D; Xu, Mengqiu M; Zhang, Fangfang F; Zhu, Mengzhu M; Wu, Zhihai Z; Cao, Xiaochao X; Ni, Meng M; Ling, Xiaomin X; Wu, Yue Y; Kuang, Zhihui Z; Hu, Moyan M; Li, Jianfeng J; Li, Xue X; Guo, Xiling X; Xu, Tianmin T; Jiang, Haiping H; Gao, Changshou C; Yu, Michael M; Liu, Junjian J; Zhong, Nanshan N; Zhou, Jianfeng J; Huang, Jian-An JA; Jin, Tengchuan T; He, Jianxing J

Publication Date: 2022-02-15

Variant appearance in text: 225: F490L

PubMed Link: 35108220

Variant Present in the following documents:

• Main text
• jci-132-154987.pdf

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Ultrapotent neutralizing antibodies against SARS-CoV-2 with a high degree of mutation resistance.

The Journal Of Clinical Investigation

Zou, Jia J; Li, Li L; Zheng, Peiyi P; Liang, Wenhua W; Hu, Siyi S; Zhou, Shuaixiang S; Wang, Yanqun Y; Zhao, Jincun J; Yuan, Daopeng D; Liu, Lu L; Wu, Dongdong D; Xu, Mengqiu M; Zhang, Fangfang F; Zhu, Mengzhu M; Wu, Zhihai Z; Cao, Xiaochao X; Ni, Meng M; Ling, Xiaomin X; Wu, Yue Y; Kuang, Zhihui Z; Hu, Moyan M; Li, Jianfeng J; Li, Xue X; Guo, Xiling X; Xu, Tianmin T; Jiang, Haiping H; Gao, Changshou C; Yu, Michael M; Liu, Junjian J; Zhong, Nanshan N; Zhou, Jianfeng J; Huang, Jian-An JA; Jin, Tengchuan T; He, Jianxing J

Publication Date: 2022-02-15

Variant appearance in text: 225: F490L

PubMed Link: 35108220

Variant Present in the following documents:

• Main text
• jci-132-154987.pdf

View BVdb publication page

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Mutations of SARS-CoV-2 spike protein: Implications on immune evasion and vaccine-induced immunity.

Seminars In Immunology

Mengist, Hylemariam Mihiretie HM; Kombe Kombe, Arnaud John AJ; Mekonnen, Daniel D; Abebaw, Abtie A; Getachew, Melese M; Jin, Tengchuan T

Publication Date: 2021-06

Variant appearance in text: 225: F490L

PubMed Link: 34836774

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

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Mutations of SARS-CoV-2 spike protein: Implications on immune evasion and vaccine-induced immunity.

Seminars In Immunology

Mengist, Hylemariam Mihiretie HM; Kombe Kombe, Arnaud John AJ; Mekonnen, Daniel D; Abebaw, Abtie A; Getachew, Melese M; Jin, Tengchuan T

Publication Date: 2021-11-20

Variant appearance in text: 225: F490L

PubMed Link: 34836774

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

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Uncovering a conserved vulnerability site in SARS-CoV-2 by a human antibody.

Embo Molecular Medicine

Li, Tingting T; Cai, Hongmin H; Zhao, Yapei Y; Li, Yanfang Y; Lai, Yanling Y; Yao, Hebang H; Liu, Liu Daisy LD; Sun, Zhou Z; van Vlissingen, Martje Fentener MF; Kuiken, Thijs T; GeurtsvanKessel, Corine H CH; Zhang, Ning N; Zhou, Bingjie B; Lu, Lu L; Gong, Yuhuan Y; Qin, Wenming W; Mondal, Moumita M; Duan, Bowen B; Xu, Shiqi S; Richard, Audrey S AS; Raoul, Hervé H; Chen, JianFeng J; Xu, Chenqi C; Wu, Ligang L; Zhou, Haisheng H; Huang, Zhong Z; Zhang, Xuechao X; Li, Jun J; Wang, Yanyan Y; Bi, Yuhai Y; Rockx, Barry B; Chen, Junfang J; Meng, Fei-Long FL; Lavillette, Dimitri D; Li, Dianfan D

Publication Date: 2021-12-07

Variant appearance in text: 225: F490L

PubMed Link: 34672091

Variant Present in the following documents:

• EMMM-13-e14544.pdf

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Review of the mechanisms of SARS-CoV-2 evolution and transmission.

Arxiv

Chen, Jiahui J; Wang, Rui R; Wei, Guo-Wei GW

Publication Date: 2021-09-15

Variant appearance in text: 225: F490L

PubMed Link: 34545334

Variant Present in the following documents:

• Main text
• nihpp-2109.08148v1.pdf

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SARS-CoV-2 B.1.1.7 sensitivity to mRNA vaccine-elicited, convalescent and monoclonal antibodies.

Medrxiv : The Preprint Server For Health Sciences

Collier, Dami A DA; De Marco, Anna A; Ferreira, Isabella A T M IATM; Meng, Bo B; Datir, Rawlings R; Walls, Alexandra C AC; Kemp S, Steven A SA; Bassi, Jessica J; Pinto, Dora D; Fregni, Chiara Silacci CS; Bianchi, Siro S; Tortorici, M Alejandra MA; Bowen, John J; Culap, Katja K; Jaconi, Stefano S; Cameroni, Elisabetta E; Snell, Gyorgy G; Pizzuto, Matteo S MS; Pellanda, Alessandra Franzetti AF; Garzoni, Christian C; Riva, Agostino A; , ; Elmer, Anne A; Kingston, Nathalie N; Graves, Barbara B; McCoy, Laura E LE; Smith, Kenneth Gc KG; Bradley, John R JR; Temperton, Nigel N; Ceron-Gutierrez L, Lourdes L; Barcenas-Morales, Gabriela G; , ; Harvey, William W; Virgin, Herbert W HW; Lanzavecchia, Antonio A; Piccoli, Luca L; Doffinger, Rainer R; Wills, Mark M; Veesler, David D; Corti, Davide D; Gupta, Ravindra K RK

Publication Date: 2021-02-15

Variant appearance in text: 225: F490L

PubMed Link: 33619509

Variant Present in the following documents:

• nihpp-2021.01.19.21249840.pdf

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 1468T>C

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

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Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: 225: F490L

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2

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A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: 225: F490L

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

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