Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
A Phase II Trial of Guadecitabine plus Atezolizumab in Metastatic Urothelial Carcinoma Progressing after Initial Immune Checkpoint Inhibitor Therapy.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Jang, H Josh HJ; Hostetter, Galen G; MacFarlane, Alexander W AW; Madaj, Zachary Z; Ross, Eric A EA; Hinoue, Toshinori T; Kulchycki, Justin R JR; Burgos, Ryan S RS; Tafseer, Mahvish M; Alpaugh, R Katherine RK; Schwebel, Candice L CL; Kokate, Rutika R; Geynisman, Daniel M DM; Zibelman, Matthew R MR; Ghatalia, Pooja P; Nichols, Peter W PW; Chung, Woonbok W; Madzo, Jozef J; Hahn, Noah M NM; Quinn, David I DI; Issa, Jean-Pierre J JJ; Topper, Michael J MJ; Baylin, Stephen B SB; Shen, Hui H; Campbell, Kerry S KS; Jones, Peter A PA; Plimack, Elizabeth R ER
Single-cell genome-wide association reveals that a nonsynonymous variant in ERAP1 confers increased susceptibility to influenza virus.
Cell Genomics
Schott, Benjamin H BH; Wang, Liuyang L; Zhu, Xinyu X; Harding, Alfred T AT; Ko, Emily R ER; Bourgeois, Jeffrey S JS; Washington, Erica J EJ; Burke, Thomas W TW; Anderson, Jack J; Bergstrom, Emma E; Gardener, Zoe Z; Paterson, Suzanna S; Brennan, Richard G RG; Chiu, Christopher C; McClain, Micah T MT; Woods, Christopher W CW; Gregory, Simon G SG; Heaton, Nicholas S NS; Ko, Dennis C DC
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Integrated DNA and RNA Sequencing Reveals Drivers of Endocrine Resistance in Estrogen Receptor-Positive Breast Cancer.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Xia, Youli Y; He, Xiaping X; Renshaw, Lorna L; Martinez-Perez, Carlos C; Kay, Charlene C; Gray, Mark M; Meehan, James J; Parker, Joel S JS; Perou, Charles M CM; Carey, Lisa A LA; Dixon, J Michael JM; Turnbull, Arran A
The Potential Role of Genetics, Environmental Factors, and Gut Dysbiosis in the Aberrant Non-Coding RNA Expression to Mediate Inflammation and Osteoclastogenic/Osteogenic Differentiation in Ankylosing Spondylitis.
ERAP, KIR, and HLA-C Profile in Recurrent Implantation Failure.
Frontiers In Immunology
Piekarska, Karolina K; Radwan, Paweł P; Tarnowska, Agnieszka A; Wiśniewski, Andrzej A; Radwan, Michał M; Wilczyński, Jacek R JR; Malinowski, Andrzej A; Nowak, Izabela I
ERAP1, ERAP2, and Two Copies of HLA-Aw19 Alleles Increase the Risk for Birdshot Chorioretinopathy in HLA-A29 Carriers.
Investigative Ophthalmology & Visual Science
Gelfman, Sahar S; Monnet, Dominique D; Ligocki, Ann J AJ; Tabary, Thierry T; Moscati, Arden A; Bai, Xiaodong X; Freudenberg, Jan J; Cooper, Blerta B; Kosmicki, Jack A JA; Wolf, Sarah S; Ferreira, Manuel A R MAR; Overton, John J; Weyne, Jonathan J; Stahl, Eli A EA; Baras, Aris A; Romano, Carmelo C; Cohen, Jacques H M JHM; Coppola, Giovanni G; Brézin, Antoine A; ,
Genetics, Epigenetics, and Gender Impact in Axial-Spondyloarthritis Susceptibility: An Update on Genetic Polymorphisms and Their Sex Related Associations.
Frontiers In Genetics
Chimenti, Maria Sole MS; Perricone, Carlo C; D'Antonio, Arianna A; Ferraioli, Mario M; Conigliaro, Paola P; Triggianese, Paola P; Ciccacci, Cinzia C; Borgiani, Paola P; Perricone, Roberto R
Polymorphisms of Antigen-Presenting Machinery Genes in Non-Small Cell Lung Cancer: Different Impact on Disease Risk and Clinical Parameters in Smokers and Never-Smokers.
Frontiers In Immunology
Wiśniewski, Andrzej A; Sobczyński, Maciej M; Pawełczyk, Konrad K; Porębska, Irena I; Jasek, Monika M; Wagner, Marta M; Niepiekło-Miniewska, Wanda W; Kowal, Aneta A; Dubis, Joanna J; Jędruchniewicz, Natalia N; Kuśnierczyk, Piotr P
Publication Date: 2021
Variant appearance in text: ERAP1: Lys528Arg; rs30187
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: ERAP1: 1583A>G; K528R; rs30187
Genetic association of ERAP1 and ERAP2 with eclampsia and preeclampsia in northeastern Brazilian women.
Scientific Reports
Ferreira, Leonardo Capistrano LC; Gomes, Carlos Eduardo Maia CEM; Duggal, Priya P; De Paula Holanda, Ingrid I; de Lima, Amanda Samara AS; do Nascimento, Paulo Ricardo Porfírio PRP; Jeronimo, Selma Maria Bezerra SMB
Publication Date: 2021-03-24
Variant appearance in text: ERAP1: Lys528Arg; rs30187
Genomic and evolutionary portraits of disease relapse in acute myeloid leukemia.
Leukemia
Rapaport, Franck F; Neelamraju, Yaseswini Y; Baslan, Timour T; Hassane, Duane D; Gruszczynska, Agata A; Robert de Massy, Marc M; Farnoud, Noushin N; Haddox, Samuel S; Lee, Tak T; Medina-Martinez, Juan J; Sheridan, Caroline C; Thurmond, Alexis A; Becker, Michael M; Bekiranov, Stefan S; Carroll, Martin M; Moses Murdock, Heardly H; Valk, Peter J M PJM; Bullinger, Lars L; D'Andrea, Richard R; Lowe, Scott W SW; Neuberg, Donna D; Levine, Ross L RL; Melnick, Ari A; Garrett-Bakelman, Francine E FE
Interaction between ERAP Alleles and HLA Class I Types Support a Role of Antigen Presentation in Hodgkin Lymphoma Development.
Cancers
Jiang, Peijia P; Veenstra, Rianne N RN; Seitz, Annika A; Nolte, Ilja M IM; Hepkema, Bouke G BG; Visser, Lydia L; van den Berg, Anke A; Diepstra, Arjan A
Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells.
Npj Systems Biology And Applications
Immanuel, Selva Rupa Christinal SRC; Ghanate, Avinash D AD; Parmar, Dharmeshkumar S DS; Yadav, Ritu R; Uthup, Riya R; Panchagnula, Venkateswarlu V; Raghunathan, Anu A
Publication Date: 2021-01-08
Variant appearance in text: ERAP1: 1583A>G; K528R; rs30187
Functional Genomic Analysis of a RUNX3 Polymorphism Associated With Ankylosing Spondylitis.
Arthritis & Rheumatology (Hoboken, N.J.)
Vecellio, Matteo M; Chen, Liye L; Cohen, Carla J CJ; Cortes, Adrian A; Li, Yan Y; Bonham, Sarah S; Selmi, Carlo C; Brown, Matthew A MA; Fischer, Roman R; Knight, Julian C JC; Wordsworth, B Paul BP