Publications:

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Integrative proteogenomic characterization of early esophageal cancer.

Nature Communications

Li, Lingling L; Jiang, Dongxian D; Zhang, Qiao Q; Liu, Hui H; Xu, Fujiang F; Guo, Chunmei C; Qin, Zhaoyu Z; Wang, Haixing H; Feng, Jinwen J; Liu, Yang Y; Chen, Weijie W; Zhang, Xue X; Bai, Lin L; Tian, Sha S; Tan, Subei S; Xu, Chen C; Song, Qi Q; Liu, Yalan Y; Zhong, Yunshi Y; Chen, Tianyin T; Zhou, Pinghong P; Zhao, Jian-Yuan JY; Hou, Yingyong Y; Ding, Chen C

Publication Date: 2023-03-25

Variant appearance in text: BRAF: K601K

PubMed Link: 36966136

Variant Present in the following documents:

• 41467_2023_37440_MOESM4_ESM.xlsx, sheet 2

View BVdb publication page

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Recapitulating thyroid cancer histotypes through engineering embryonic stem cells.

Nature Communications

Veschi, Veronica V; Turdo, Alice A; Modica, Chiara C; Verona, Francesco F; Di Franco, Simone S; Gaggianesi, Miriam M; Tirrò, Elena E; Di Bella, Sebastiano S; Iacono, Melania Lo ML; Pantina, Vincenzo Davide VD; Porcelli, Gaetana G; Mangiapane, Laura Rosa LR; Bianca, Paola P; Rizzo, Aroldo A; Sciacca, Elisabetta E; Pillitteri, Irene I; Vella, Veronica V; Belfiore, Antonino A; Bongiorno, Maria Rita MR; Pistone, Giuseppe G; Memeo, Lorenzo L; Colarossi, Lorenzo L; Giuffrida, Dario D; Colarossi, Cristina C; Vigneri, Paolo P; Todaro, Matilde M; Stassi, Giorgio G

Publication Date: 2023-03-11

Variant appearance in text: BRAF: K601K

PubMed Link: 36906579

Variant Present in the following documents:

• 41467_2023_36922_MOESM4_ESM.xls, sheet 2

View BVdb publication page

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Acetylation-dependent regulation of BRAF oncogenic function.

Cell Reports

Dai, Xiangpeng X; Zhang, Xiaoling X; Yin, Qing Q; Hu, Jia J; Guo, Jianping J; Gao, Yang Y; Snell, Aidan H AH; Inuzuka, Hiroyuki H; Wan, Lixin L; Wei, Wenyi W

Publication Date: 2022-01-18

Variant appearance in text: BRAF: K601K

PubMed Link: 35045286

Variant Present in the following documents:

• NIHMS1772773-supplement-1.pdf

View BVdb publication page

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Acetylation-dependent regulation of BRAF oncogenic function.

Cell Reports

Dai, Xiangpeng X; Zhang, Xiaoling X; Yin, Qing Q; Hu, Jia J; Guo, Jianping J; Gao, Yang Y; Snell, Aidan H AH; Inuzuka, Hiroyuki H; Wan, Lixin L; Wei, Wenyi W

Publication Date: 2022-01-18

Variant appearance in text: BRAF: K601K

PubMed Link: 35045286

Variant Present in the following documents:

• NIHMS1772773-supplement-1.pdf

View BVdb publication page

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Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice.

Plos One

Prentice, Leah M LM; Miller, Ruth R RR; Knaggs, Jeff J; Mazloomian, Alborz A; Aguirre Hernandez, Rosalia R; Franchini, Patrick P; Parsa, Kourosh K; Tessier-Cloutier, Basile B; Lapuk, Anna A; Huntsman, David D; Schaeffer, David F DF; Sheffield, Brandon S BS

Publication Date: 2018

Variant appearance in text: BRAF: K601K

PubMed Link: 29698444

Variant Present in the following documents:

• pone.0196434.s001.xlsx, sheet 3
• pone.0196434.s001.xlsx, sheet 1
• pone.0196434.s001.xlsx, sheet 2

View BVdb publication page

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Heterogeneity and frequency of BRAF mutations in primary melanoma: Comparison between molecular methods and immunohistochemistry.

Oncotarget

Bruno, William W; Martinuzzi, Claudia C; Andreotti, Virginia V; Pastorino, Lorenza L; Spagnolo, Francesco F; Dalmasso, Bruna B; Cabiddu, Francesco F; Gualco, Marina M; Ballestrero, Alberto A; Bianchi-Scarrà, Giovanna G; Queirolo, Paola P; Grillo, Federica F; Mastracci, Luca L; Ghiorzo, Paola P; ,

Publication Date: 2017-01-31

Variant appearance in text: BRAF: k601k

PubMed Link: 28039443

Variant Present in the following documents:

• Main text
• oncotarget-08-8069.pdf

View BVdb publication page

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Digital next-generation sequencing identifies low-abundance mutations in pancreatic juice samples collected from the duodenum of patients with pancreatic cancer and intraductal papillary mucinous neoplasms.

Gut

Yu, Jun J; Sadakari, Yoshihiko Y; Shindo, Koji K; Suenaga, Masaya M; Brant, Aaron A; Almario, Jose Alejandro Navarro JAN; Borges, Michael M; Barkley, Thomas T; Fesharakizadeh, Shahriar S; Ford, Madeline M; Hruban, Ralph H RH; Shin, Eun Ji EJ; Lennon, Anne Marie AM; Canto, Marcia Irene MI; Goggins, Michael M

Publication Date: 2017-09

Variant appearance in text: BRAF: K601K

PubMed Link: 27432539

Variant Present in the following documents:

• Main text
• gutjnl-2015-311166.pdf

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Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: BRAF: K601K

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2
• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 1

View BVdb publication page

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BRAF pyrosequencing analysis aided by a lookup table.

American Journal Of Clinical Pathology

Olson, Matthew T MT; Harrington, Colleen C; Beierl, Katie K; Chen, Guoli G; Thiess, Michele M; O'Neill, Alan A; Taube, Janis M JM; Zeiger, Martha A MA; Lin, Ming-Tseh MT; Eshleman, James R JR

Publication Date: 2014-05

Variant appearance in text: BRAF: 1803A>G; K601K

PubMed Link: 24713734

Variant Present in the following documents:

• Main text

View BVdb publication page

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Lack of BRAF V600E mutation in human myeloma cell lines established from myeloma patients with extramedullary disease.

Blood Cancer Journal

Lodé, L L; Moreau, P P; Ménard, A A; Godon, C C; Touzeau, C C; Amiot, M M; Le Gouill, S S; Béné, M C MC; Pellat-Deceunynck, C C

Publication Date: 2013-11-22

Variant appearance in text: BRAF: K601K

PubMed Link: 24270325

Variant Present in the following documents:

• Main text
• bcj201360a.pdf

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Automated universal BRAF state detection within the activation segment in skin metastases by pyrosequencing-based assay U-BRAF(V600).

Plos One

Skorokhod, Alexander A; Helmbold, Peter P; Brors, Benedikt B; Schirmacher, Peter P; Enk, Alexander A; Penzel, Roland R

Publication Date: 2013

Variant appearance in text: BRAF: K601K

PubMed Link: 23555633

Variant Present in the following documents:

• Main text
• pone.0059221.pdf
• pone.0059221.s002.pdf

View BVdb publication page

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Sequence analysis of 515 kinase genes in chronic lymphocytic leukemia.

Leukemia

Zhang, X X; Reis, M M; Khoriaty, R R; Li, Y Y; Ouillette, P P; Samayoa, J J; Carter, H H; Karchin, R R; Li, M M; Diaz, L A LA; Velculescu, V E VE; Papadopoulos, N N; Kinzler, K W KW; Vogelstein, B B; Malek, S N SN

Publication Date: 2011-12

Variant appearance in text: BRAF: K601K

PubMed Link: 21701494

Variant Present in the following documents:

• Main text

View BVdb publication page

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Polyclonality of BRAF mutations in primary melanoma and the selection of mutant alleles during progression.

British Journal Of Cancer

Lin, J J; Goto, Y Y; Murata, H H; Sakaizawa, K K; Uchiyama, A A; Saida, T T; Takata, M M

Publication Date: 2011-02-01

Variant appearance in text: BRAF: K601K

PubMed Link: 21224857

Variant Present in the following documents:

• Main text
• 6606072a.pdf

View BVdb publication page

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