Network expansion of genetic associations defines a pleiotropy map of human cell biology.
Nature Genetics
Barrio-Hernandez, Inigo I; Schwartzentruber, Jeremy J; Shrivastava, Anjali A; Del-Toro, Noemi N; Gonzalez, Asier A; Zhang, Qian Q; Mountjoy, Edward E; Suveges, Daniel D; Ochoa, David D; Ghoussaini, Maya M; Bradley, Glyn G; Hermjakob, Henning H; Orchard, Sandra S; Dunham, Ian I; Anderson, Carl A CA; Porras, Pablo P; Beltrao, Pedro P
Publication Date: 2023-02-23
Variant appearance in text: BRAF: 1799_1801del; Val600_Lys601delinsGlu
Genomic Alterations Identification and Resistance Mechanisms Exploration of NSCLC With Central Nervous System Metastases Using Liquid Biopsy of Cerebrospinal Fluid: A Real-World Study.
Frontiers In Oncology
Shen, Fangfang F; Liang, Naixin N; Fan, Zaiwen Z; Zhao, Min M; Kang, Jing J; Wang, Xifang X; Hu, Qun Q; Mu, Yongping Y; Wang, Kai K; Yuan, Mingming M; Chen, Rongrong R; Guo, Wei W; Dong, Guilan G; Zhao, Jun J; Bai, Jun J
Publication Date: 2022
Variant appearance in text: BRAF: 1799_1801delTGA; V600_K601delinsE
Distinct mutational features across preinvasive and invasive subtypes identified through comprehensive profiling of surgically resected lung adenocarcinoma.
Modern Pathology : An Official Journal Of The United States And Canadian Academy Of Pathology, Inc
Circulating tumor DNA as a biomarker for monitoring early treatment responses of patients with advanced lung adenocarcinoma receiving immune checkpoint inhibitors.
Molecular Oncology
van der Leest, Paul P; Hiddinga, Birgitta B; Miedema, Anneke A; Aguirre Azpurua, Maria L ML; Rifaela, Naomi N; Ter Elst, Arja A; Timens, Wim W; Groen, Harry J M HJM; van Kempen, Léon C LC; Hiltermann, T Jeroen N TJN; Schuuring, Ed E
Circulating tumor DNA as a biomarker for monitoring early treatment responses of patients with advanced lung adenocarcinoma receiving immune checkpoint inhibitors.
Molecular Oncology
van der Leest, Paul P; Hiddinga, Birgitta B; Miedema, Anneke A; Aguirre Azpurua, Maria L ML; Rifaela, Naomi N; Ter Elst, Arja A; Timens, Wim W; Groen, Harry J M HJM; van Kempen, Léon C LC; Hiltermann, T Jeroen N TJN; Schuuring, Ed E
Integrated molecular drivers coordinate biological and clinical states in melanoma.
Nature Genetics
Conway, Jake R JR; Dietlein, Felix F; Taylor-Weiner, Amaro A; AlDubayan, Saud S; Vokes, Natalie N; Keenan, Tanya T; Reardon, Brendan B; He, Meng Xiao MX; Margolis, Claire A CA; Weirather, Jason L JL; Haq, Rizwan R; Schilling, Bastian B; Stephen Hodi, F F; Schadendorf, Dirk D; Liu, David D; Van Allen, Eliezer M EM
Publication Date: 2020-12
Variant appearance in text: BRAF: 1799_1801delTGA; rs397516897
Pan-cancer whole-genome analyses of metastatic solid tumours.
Nature
Priestley, Peter P; Baber, Jonathan J; Lolkema, Martijn P MP; Steeghs, Neeltje N; de Bruijn, Ewart E; Shale, Charles C; Duyvesteyn, Korneel K; Haidari, Susan S; van Hoeck, Arne A; Onstenk, Wendy W; Roepman, Paul P; Voda, Mircea M; Bloemendal, Haiko J HJ; Tjan-Heijnen, Vivianne C G VCG; van Herpen, Carla M L CML; Labots, Mariette M; Witteveen, Petronella O PO; Smit, Egbert F EF; Sleijfer, Stefan S; Voest, Emile E EE; Cuppen, Edwin E
Publication Date: 2019-11
Variant appearance in text: BRAF: Val600_Lys601delinsGlu
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas.
Cell Reports
Way, Gregory P GP; Sanchez-Vega, Francisco F; La, Konnor K; Armenia, Joshua J; Chatila, Walid K WK; Luna, Augustin A; Sander, Chris C; Cherniack, Andrew D AD; Mina, Marco M; Ciriello, Giovanni G; Schultz, Nikolaus N; , ; Sanchez, Yolanda Y; Greene, Casey S CS
Publication Date: 2018-04-03
Variant appearance in text: BRAF: Val600_Lys601delinsGlu
Genetic and Genomic Characterization of 462 Melanoma Patient-Derived Xenografts, Tumor Biopsies, and Cell Lines.
Cell Reports
Garman, Bradley B; Anastopoulos, Ioannis N IN; Krepler, Clemens C; Brafford, Patricia P; Sproesser, Katrin K; Jiang, Yuchao Y; Wubbenhorst, Bradley B; Amaravadi, Ravi R; Bennett, Joseph J; Beqiri, Marilda M; Elder, David D; Flaherty, Keith T KT; Frederick, Dennie T DT; Gangadhar, Tara C TC; Guarino, Michael M; Hoon, David D; Karakousis, Giorgos G; Liu, Qin Q; Mitra, Nandita N; Petrelli, Nicholas J NJ; Schuchter, Lynn L; Shannan, Batool B; Shields, Carol L CL; Wargo, Jennifer J; Wenz, Brandon B; Wilson, Melissa A MA; Xiao, Min M; Xu, Wei W; Xu, Xaiowei X; Yin, Xiangfan X; Zhang, Nancy R NR; Davies, Michael A MA; Herlyn, Meenhard M; Nathanson, Katherine L KL
Frequency and Significance of Ras, Tert Promoter, and Braf Mutations in Cytologically Indeterminate Thyroid Nodules: A Monocentric Case Series at a Tertiary-Level Endocrinology Unit.
Frontiers In Endocrinology
Censi, Simona S; Cavedon, Elisabetta E; Bertazza, Loris L; Galuppini, Francesca F; Watutantrige-Fernando, Sara S; De Lazzari, Paola P; Nacamulli, Davide D; Pennelli, Gianmaria G; Fassina, Ambrogio A; Iacobone, Maurizio M; Casal Ide, Eric E; Vianello, Federica F; Barollo, Susi S; Mian, Caterina C
Pan-urologic cancer genomic subtypes that transcend tissue of origin.
Nature Communications
Chen, Fengju F; Zhang, Yiqun Y; Bossé, Dominick D; Lalani, Aly-Khan A AA; Hakimi, A Ari AA; Hsieh, James J JJ; Choueiri, Toni K TK; Gibbons, Don L DL; Ittmann, Michael M; Creighton, Chad J CJ
Genome-wide chemical mutagenesis screens allow unbiased saturation of the cancer genome and identification of drug resistance mutations.
Genome Research
Brammeld, Jonathan S JS; Petljak, Mia M; Martincorena, Inigo I; Williams, Steven P SP; Alonso, Luz Garcia LG; Dalmases, Alba A; Bellosillo, Beatriz B; Robles-Espinoza, Carla Daniela CD; Price, Stacey S; Barthorpe, Syd S; Tarpey, Patrick P; Alifrangis, Constantine C; Bignell, Graham G; Vidal, Joana J; Young, Jamie J; Stebbings, Lucy L; Beal, Kathryn K; Stratton, Michael R MR; Saez-Rodriguez, Julio J; Garnett, Mathew M; Montagut, Clara C; Iorio, Francesco F; McDermott, Ultan U
Identification of new biomarkers for human papillary thyroid carcinoma employing NanoString analysis.
Oncotarget
Chitikova, Zhanna Z; Pusztaszeri, Marc M; Makhlouf, Anne-Marie AM; Berczy, Margaret M; Delucinge-Vivier, Celine C; Triponez, Frederic F; Meyer, Patrick P; Philippe, Jacques J; Dibner, Charna C
Preoperative RAS mutational analysis is of great value in predicting follicular variant of papillary thyroid carcinoma.
Biomed Research International
Hwang, Tae Sook TS; Kim, Wook Youn WY; Han, Hye Seung HS; Lim, So Dug SD; Kim, Wan-Seop WS; Yoo, Young Bum YB; Park, Kyoung Sik KS; Oh, Seo Young SY; Kim, Suk Kyeong SK; Yang, Jung Hyun JH
Molecular alterations in clinical stage III cutaneous melanoma: Correlation with clinicopathological features and patient outcome.
Oncology Letters
Rutkowski, Piotr P; Gos, Aleksandra A; Jurkowska, Monika M; Switaj, Tomasz T; Dziewirski, Wirginiusz W; Zdzienicki, Marcin M; Ptaszyński, Konrad K; Michej, Wanda W; Tysarowski, Andrzej A; Siedlecki, Janusz A JA
Publication Date: 2014-07
Variant appearance in text: BRAF: V600_K601delinsE
Molecular characterization and patient outcome of melanoma nodal metastases and an unknown primary site.
Annals Of Surgical Oncology
Gos, Aleksandra A; Jurkowska, Monika M; van Akkooi, Alexander A; Robert, Caroline C; Kosela-Paterczyk, Hanna H; Koljenović, Senada S; Kamsukom, Nyam N; Michej, Wanda W; Jeziorski, Arkadiusz A; Pluta, Piotr P; Verhoef, Cornelis C; Siedlecki, Janusz A JA; Eggermont, Alexander M M AM; Rutkowski, Piotr P
Publication Date: 2014-12
Variant appearance in text: BRAF: V600_K601delinsE
BRAF pyrosequencing analysis aided by a lookup table.
American Journal Of Clinical Pathology
Olson, Matthew T MT; Harrington, Colleen C; Beierl, Katie K; Chen, Guoli G; Thiess, Michele M; O'Neill, Alan A; Taube, Janis M JM; Zeiger, Martha A MA; Lin, Ming-Tseh MT; Eshleman, James R JR
Tumor cellularity as a quality assurance measure for accurate clinical detection of BRAF mutations in melanoma.
Molecular Diagnosis & Therapy
Dudley, Jonathan C JC; Gurda, Grzegorz T GT; Tseng, Li-Hui LH; Anderson, Derek A DA; Chen, Guoli G; Taube, Janis M JM; Gocke, Christopher D CD; Eshleman, James R JR; Lin, Ming-Tseh MT
Publication Date: 2014-08
Variant appearance in text: BRAF: 1799_1801del; V600_K601delinsE
Clinical, pathologic, and biologic features associated with BRAF mutations in non-small cell lung cancer.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Cardarella, Stephanie S; Ogino, Atsuko A; Nishino, Mizuki M; Butaney, Mohit M; Shen, Jeanne J; Lydon, Christine C; Yeap, Beow Y BY; Sholl, Lynette M LM; Johnson, Bruce E BE; Jänne, Pasi A PA
Molecular genotyping of follicular variant of papillary thyroid carcinoma correlates with diagnostic category of fine-needle aspiration cytology: values of RAS mutation testing.
Thyroid : Official Journal Of The American Thyroid Association
Lee, Sang Ryung SR; Jung, Chan Kwon CK; Kim, Tae Eun TE; Bae, Ja Seong JS; Jung, So Lyung SL; Choi, Yeong Jin YJ; Kang, Chang Suk CS