Publications:

A generalizable machine learning framework for classifying DNA repair defects using ctDNA exomes.

Npj Precision Oncology

Ritch, Elie J EJ; Herberts, Cameron C; Warner, Evan W EW; Ng, Sarah W S SWS; Kwan, Edmond M EM; Bacon, Jack V W JVW; Bernales, Cecily Q CQ; Schönlau, Elena E; Fonseca, Nicolette M NM; Giri, Veda N VN; Maurice-Dror, Corinne C; Vandekerkhove, Gillian G; Jones, Steven J M SJM; Chi, Kim N KN; Wyatt, Alexander W AW

Publication Date: 2023-03-13

Variant appearance in text: BRAF: A569T

PubMed Link: 36914848

Variant Present in the following documents:

• 41698_2023_366_MOESM2_ESM.xlsx, sheet 4

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Association between BRAF mutant classification and the efficacy of pemetrexed-based chemotherapy in Chinese advanced non-small cell lung cancer patients: a multicenter retrospective study.

Translational Cancer Research

Lei, Lei L; Wang, Wen-Xian WX; Zhu, You-Cai YC; Pu, Xing-Xiang XX; Fang, Yong Y; Wang, Hong H; Zhuang, Wu W; Zhang, Yin-Bin YB; Wang, Li-Ping LP; Xu, Chun-Wei CW; Fang, Mei-Yu MY

Publication Date: 2020-10

Variant appearance in text: BRAF: A569T

PubMed Link: 35117215

Variant Present in the following documents:

• tcr-09-10-6039.pdf

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Mitogenic and progenitor gene programmes in single pilocytic astrocytoma cells.

Nature Communications

Reitman, Zachary J ZJ; Paolella, Brenton R BR; Bergthold, Guillaume G; Pelton, Kristine K; Becker, Sarah S; Jones, Robert R; Sinai, Claire E CE; Malkin, Hayley H; Huang, Ying Y; Grimmet, Leslie L; Herbert, Zachary T ZT; Sun, Yu Y; Weatherbee, Jessica L JL; Alberta, John A JA; Daley, John F JF; Rozenblatt-Rosen, Orit O; Condurat, Alexandra L AL; Qian, Kenin K; Khadka, Prasidda P; Segal, Rosalind A RA; Haas-Kogan, Daphne D; Filbin, Mariella G MG; Suva, Mario L ML; Regev, Aviv A; Stiles, Charles D CD; Kieran, Mark W MW; Goumnerova, Liliana L; Ligon, Keith L KL; Shalek, Alex K AK; Bandopadhayay, Pratiti P; Beroukhim, Rameen R

Publication Date: 2019-08-19

Variant appearance in text: BRAF: 1705G>A

PubMed Link: 31427603

Variant Present in the following documents:

• 41467_2019_11493_MOESM5_ESM.xlsx, sheet 1

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Circulating tumour DNA sequence analysis as an alternative to multiple myeloma bone marrow aspirates.

Nature Communications

Kis, Olena O; Kaedbey, Rayan R; Chow, Signy S; Danesh, Arnavaz A; Dowar, Mark M; Li, Tiantian T; Li, Zhihua Z; Liu, Jessica J; Mansour, Mark M; Masih-Khan, Esther E; Zhang, Tong T; Bratman, Scott V SV; Oza, Amit M AM; Kamel-Reid, Suzanne S; Trudel, Suzanne S; Pugh, Trevor J TJ

Publication Date: 2017-05-11

Variant appearance in text: BRAF: 1705G>A

PubMed Link: 28492226

Variant Present in the following documents:

• ncomms15086-s3.xlsx, sheet 1

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