Publications:

Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.

Nature Communications

Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA

Publication Date: 2023-04-03

Variant appearance in text: EGFR: D458N

PubMed Link: 37012232

Variant Present in the following documents:

• 41467_2023_37547_MOESM12_ESM.xlsx, sheet 2

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Genomic landscape of lung cancer in the young.

Frontiers In Oncology

Ruiz, Rossana R; Galvez-Nino, Marco M; Roque, Katia K; Montes, Jaime J; Nuñez, Maria M; Raez, Luis L; Sánchez-Gambetta, Sergio S; Jaúregui, Sandra S; Viale, Sandra S; Smith, Edward S ES; Pinto, Joseph A JA; Mas, Luis L

Publication Date: 2022

Variant appearance in text: EGFR: D458N

PubMed Link: 36263208

Variant Present in the following documents:

• DataSheet_2.pdf

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Combined exome and transcriptome sequencing of non-muscle-invasive bladder cancer: associations between genomic changes, expression subtypes, and clinical outcomes.

Genome Medicine

Goel, Anshita A; Ward, Douglas G DG; Noyvert, Boris B; Yu, Minghao M; Gordon, Naheema S NS; Abbotts, Ben B; Colbourne, John K JK; Kissane, Stephen S; James, Nicholas D ND; Zeegers, Maurice P MP; Cheng, Kar Keung KK; Cazier, Jean-Baptiste JB; Whalley, Celina M CM; Beggs, Andrew D AD; Palles, Claire C; Arnold, Roland R; Bryan, Richard T RT

Publication Date: 2022-06-03

Variant appearance in text: EGFR: 1372G>A; Asp458Asn

PubMed Link: 35655252

Variant Present in the following documents:

• 13073_2022_1056_MOESM1_ESM.xlsx, sheet 3

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Germline and somatic genetic alterations in two first-degree relatives with appendiceal low-grade mucinous carcinoma peritonei.

Clinical Case Reports

King, Mary Caitlin MC; Munoz-Zuluaga, Carlos C; Ledakis, Panayotis P; Studeman, Kimberley K; Sittig, Michelle M; Gushchin, Vadim V; Sardi, Armando A

Publication Date: 2020-12

Variant appearance in text: EGFR: D458N

PubMed Link: 33363901

Variant Present in the following documents:

• Main text
• CCR3-8-3168.pdf

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Spontaneous genomic alterations in a chimeric model of colorectal cancer enable metastasis and guide effective combinatorial therapy.

Plos One

Zhou, Yinghui Y; Rideout, William M WM; Bressel, Angela A; Yalavarthi, Sireesha S; Zi, Tong T; Potz, Darren D; Farlow, Samuel S; Brodeur, Joelle J; Monti, Anthony A; Reddipalli, Shailaja S; Xiao, Qiurong Q; Bottega, Steve S; Feng, Bin B; Chiu, M Isabel MI; Bosenberg, Marcus M; Heyer, Joerg J

Publication Date: 2014

Variant appearance in text: EGFR: 1372G>A

PubMed Link: 25162504

Variant Present in the following documents:

• Main text

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