Publications:

---

HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: 36C>A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

---

Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: TG: 36C>A

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8

View BVdb publication page

---

Cre recombinase expression cooperates with homozygous FLT3 internal tandem duplication knockin mouse model to induce acute myeloid leukemia.

Leukemia

Straube, Jasmin J; Eifert, Theresa T; Vu, Therese T; Janardhanan, Yashaswini Y; Haldar, Rohit R; von Eyss, Björn B; Cooper, Leanne L; Bruedigam, Claudia C; Ling, Victoria Y VY; Cooper, Emily E; Patch, Ann-Marie AM; Bullinger, Lars L; Schnoeder, Tina M TM; Bywater, Megan M; Heidel, Florian H FH; Lane, Steven W SW

Publication Date: 2023-02-04

Variant appearance in text: TG: a12a

PubMed Link: 36739348

Variant Present in the following documents:

• 41375_2023_1832_MOESM6_ESM.xlsx, sheet 1

View BVdb publication page

---

A genomic deletion encompassing CRYBB2-CRYBB2P1 is responsible for autosomal recessive congenital cataracts.

Human Genome Variation

Irum, Bushra B; Kabir, Firoz F; Shoshany, Nadav N; Khan, Shahid Y SY; Rauf, Bushra B; Naeem, Muhammad Asif MA; Qaiser, Tanveer A TA; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-09-08

Variant appearance in text: TG: A12A

PubMed Link: 36075891

Variant Present in the following documents:

• 41439_2022_208_MOESM4_ESM.xlsx, sheet 2

View BVdb publication page

---

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: TG: 36C>A

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

---

An isogenic cell line panel for sequence-based screening of targeted anticancer drugs.

Iscience

Cook, Ashley L AL; Wyhs, Nicolas N; Sur, Surojit S; Ptak, Blair B; Popoli, Maria M; Dobbyn, Laura L; Papadopoulos, Tasos T; Bettegowda, Chetan C; Papadopoulos, Nickolas N; Vogelstein, Bert B; Zhou, Shibin S; Kinzler, Kenneth W KW

Publication Date: 2022-06-17

Variant appearance in text: N/A

PubMed Link: 35692635

Variant Present in the following documents:

View BVdb publication page

---

Anti-Obesity Effects of Polymethoxyflavone-Rich Fraction from Jinkyool (Citrus sunki Hort. ex Tanaka) Leaf on Obese Mice Induced by High-Fat Diet.

Nutrients

Jin, Yeong-Jun YJ; Jang, Mi-Gyeong MG; Kim, Jae-Won JW; Baek, Songyee S; Ko, Hee-Chul HC; Hur, Sung-Pyo SP; Kim, Se-Jae SJ

Publication Date: 2022-02-18

Variant appearance in text: TG: A12A

PubMed Link: 35215514

Variant Present in the following documents:

• Main text

View BVdb publication page

---

PPARγ2 Pro12Ala Polymorphism is Associated in Children With Traits Related to Susceptibility to Type 2 Diabetes.

Frontiers In Pharmacology

Vales-Villamarín, Claudia C; de Dios, Olaya O; Pérez-Nadador, Iris I; Gavela-Pérez, Teresa T; Soriano-Guillén, Leandro L; Garcés, Carmen C

Publication Date: 2021

Variant appearance in text: TG: Ala12Ala

PubMed Link: 34887761

Variant Present in the following documents:

• Main text
• fphar-12-763853.pdf

View BVdb publication page

---

Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: TG: 36C>A

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

High-efficiency delivery of CRISPR-Cas9 by engineered probiotics enables precise microbiome editing.

Molecular Systems Biology

Neil, Kevin K; Allard, Nancy N; Roy, Patricia P; Grenier, Frédéric F; Menendez, Alfredo A; Burrus, Vincent V; Rodrigue, Sébastien S

Publication Date: 2021-10

Variant appearance in text: TG: 36C>A

PubMed Link: 34665940

Variant Present in the following documents:

• MSB-17-e10335-s001.xlsx, sheet 3

View BVdb publication page

---

Haplotype-resolved de novo assembly of the Vero cell line genome.

Npj Vaccines

Sène, Marie-Angélique MA; Kiesslich, Sascha S; Djambazian, Haig H; Ragoussis, Jiannis J; Xia, Yu Y; Kamen, Amine A AA

Publication Date: 2021-08-20

Variant appearance in text: TG: 36C>A

PubMed Link: 34417462

Variant Present in the following documents:

• 41541_2021_358_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

---

Effects of imatinib on vascular insulin sensitivity and free fatty acid transport in early weight gain.

Plos One

Box, Camiel V J CVJ; Sandhu, Amandeep K AK; Turaihi, Alexander H AH; Xiaoké, Pan P; Dallinga-Thie, Geesje G; Aman, Jurjan J; Eringa, Etto C EC

Publication Date: 2021

Variant appearance in text: TG: A12A

PubMed Link: 34214082

Variant Present in the following documents:

• Main text

View BVdb publication page

---

K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: TG: 36C>A

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

View BVdb publication page

---

mTOR Signaling and SREBP Activity Increase FADS2 Expression and Can Activate Sapienate Biosynthesis.

Cell Reports

Triki, Mouna M; Rinaldi, Gianmarco G; Planque, Melanie M; Broekaert, Dorien D; Winkelkotte, Alina M AM; Maier, Carina R CR; Janaki Raman, Sudha S; Vandekeere, Anke A; Van Elsen, Joke J; Orth, Martin F MF; Grünewald, Thomas G P TGP; Schulze, Almut A; Fendt, Sarah-Maria SM

Publication Date: 2020-06-23

Variant appearance in text: N/A

PubMed Link: 32579932

Variant Present in the following documents:

View BVdb publication page

---

A nutrient-limited screen unmasks rifabutin hyperactivity for extensively drug-resistant Acinetobacter baumannii.

Nature Microbiology

Luna, Brian B; Trebosc, Vincent V; Lee, Bosul B; Bakowski, Malina M; Ulhaq, Amber A; Yan, Jun J; Lu, Peggy P; Cheng, Jiaqi J; Nielsen, Travis T; Lim, Juhyeon J; Ketphan, Warisa W; Eoh, Hyungjin H; McNamara, Case C; Skandalis, Nicholas N; She, Rosemary R; Kemmer, Christian C; Lociuro, Sergio S; Dale, Glenn E GE; Spellberg, Brad B

Publication Date: 2020-09

Variant appearance in text: TG: 36C>A

PubMed Link: 32514072

Variant Present in the following documents:

• NIHMS1592993-supplement-1592993_Supp_Tab2.xlsx, sheet 14

View BVdb publication page

---

Bi-Functional Chicken Immunoglobulin-Like Receptors With a Single Extracellular Domain (ChIR-AB1): Potential Framework Genes Among a Relatively Stable Number of Genes Per Haplotype.

Frontiers In Immunology

Meziane, El Kahina EK; Potts, Nicola D ND; Viertlboeck, Birgit C BC; Løvlie, Hanne H; Krupa, Andrew P AP; Burke, Terry A TA; Brown, Stewart S; Watson, Kellie A KA; Richardson, David S DS; Pizzari, Tommaso T; Göbel, Thomas W TW; Kaufman, Jim J

Publication Date: 2019

Variant appearance in text: TG: A12A

PubMed Link: 31620133

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: TG: 36C>A; Ala12Ala

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

---

Direct Phosphorylation of SRC Homology 3 Domains by Tyrosine Kinase Receptors Disassembles Ligand-Induced Signaling Networks.

Molecular Cell

Dionne, Ugo U; Chartier, François J M FJM; López de Los Santos, Yossef Y; Lavoie, Noémie N; Bernard, David N DN; Banerjee, Sara L SL; Otis, François F; Jacquet, Kévin K; Tremblay, Michel G MG; Jain, Mani M; Bourassa, Sylvie S; Gish, Gerald D GD; Gagné, Jean-Philippe JP; Poirier, Guy G GG; Laprise, Patrick P; Voyer, Normand N; Landry, Christian R CR; Doucet, Nicolas N; Bisson, Nicolas N

Publication Date: 2018-06-21

Variant appearance in text: TG: A12A

PubMed Link: 29910111

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Gene-diet-related factors of hyperglycaemia in postmenopausal women.

Journal Of Applied Genetics

Grygiel-Górniak, Bogna B; Kaczmarek, Elżbieta E; Mosor, Maria M; Przysławski, Juliusz J; Nowak, Jerzy J

Publication Date: 2018-05

Variant appearance in text: TG: Ala12Ala

PubMed Link: 29464546

Variant Present in the following documents:

• Main text
• 13353_2018_Article_434.pdf

View BVdb publication page

---

The Gene-Diet Associations in Postmenopausal Women with Newly Diagnosed Dyslipidemia.

The Journal Of Nutrition, Health & Aging

Grygiel-Górniak, B B; Kaczmarek, E E; Mosor, M M; Przysławski, J J; Nowak, J J

Publication Date: 2017

Variant appearance in text: TG: Ala12Ala

PubMed Link: 29083445

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Uric acid and obesity-related phenotypes in postmenopausal women.

Molecular And Cellular Biochemistry

Grygiel-Górniak, B B; Mosor, M M; Marcinkowska, J J; Przysławski, J J; Nowak, J J

Publication Date: 2018-06

Variant appearance in text: TG: Ala12Ala

PubMed Link: 29075989

Variant Present in the following documents:

• Main text
• 11010_2017_Article_3215.pdf

View BVdb publication page

---

Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: N/A

PubMed Link: 28231761

Variant Present in the following documents:

View BVdb publication page

---

Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: TG: 36C>A

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

A novel lipid transfer protein from the pea Pisum sativum: isolation, recombinant expression, solution structure, antifungal activity, lipid binding, and allergenic properties.

Bmc Plant Biology

Bogdanov, Ivan V IV; Shenkarev, Zakhar O ZO; Finkina, Ekaterina I EI; Melnikova, Daria N DN; Rumynskiy, Eugene I EI; Arseniev, Alexander S AS; Ovchinnikova, Tatiana V TV

Publication Date: 2016-04-30

Variant appearance in text: TG: Ala12Ala

PubMed Link: 27137920

Variant Present in the following documents:

• 12870_2016_Article_792.pdf

View BVdb publication page

---

Association between PPAR-γ2 Pro12Ala genotype and insulin resistance is modified by circulating lipids in Mexican children.

Scientific Reports

Stryjecki, Carolina C; Peralta-Romero, Jesus J; Alyass, Akram A; Karam-Araujo, Roberto R; Suarez, Fernando F; Gomez-Zamudio, Jaime J; Burguete-Garcia, Ana A; Cruz, Miguel M; Meyre, David D

Publication Date: 2016-04-14

Variant appearance in text: TG: Ala12Ala

PubMed Link: 27075119

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: TG: A12A

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2

View BVdb publication page

---

Patient profiling in diabetes and role of canagliflozin.

Pharmacogenomics And Personalized Medicine

Amblee, Ambika A

Publication Date: 2014

Variant appearance in text: TG: Ala12Ala

PubMed Link: 25540592

Variant Present in the following documents:

• Main text
• pgpm-7-367.pdf

View BVdb publication page

---

Age-related mutations associated with clonal hematopoietic expansion and malignancies.

Nature Medicine

Xie, Mingchao M; Lu, Charles C; Wang, Jiayin J; McLellan, Michael D MD; Johnson, Kimberly J KJ; Wendl, Michael C MC; McMichael, Joshua F JF; Schmidt, Heather K HK; Yellapantula, Venkata V; Miller, Christopher A CA; Ozenberger, Bradley A BA; Welch, John S JS; Link, Daniel C DC; Walter, Matthew J MJ; Mardis, Elaine R ER; Dipersio, John F JF; Chen, Feng F; Wilson, Richard K RK; Ley, Timothy J TJ; Ding, Li L

Publication Date: 2014-12

Variant appearance in text: TG: A12A

PubMed Link: 25326804

Variant Present in the following documents:

• NIHMS630249-supplement-5.xlsx, sheet 1

View BVdb publication page

---

Association of PPARγ2 gene variant Pro12Ala polymorphism with hypertension and obesity in the aboriginal Qatari population known for being consanguineous.

The Application Of Clinical Genetics

Bener, Abdulbari A; Darwish, Sarah S; Al-Hamaq, Abdulla Oaa AO; Mohammad, Ramzi M RM; Yousafzai, Mohammad T MT

Publication Date: 2013

Variant appearance in text: TG: Ala12Ala

PubMed Link: 24187509

Variant Present in the following documents:

• tacg-6-103.pdf

View BVdb publication page

---

PPARγ Pro12Ala interacts with fat intake for obesity and weight loss in a behavioural treatment based on the Mediterranean diet.

Molecular Nutrition & Food Research

Garaulet, Marta M; Smith, Caren E CE; Hernández-González, Teresa T; Lee, Yu-Chi YC; Ordovás, Jose M JM

Publication Date: 2011-12

Variant appearance in text: TG: Ala12Ala

PubMed Link: 22102511

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Studies of gene variants related to inflammation, oxidative stress, dyslipidemia, and obesity: implications for a nutrigenetic approach.

Journal Of Obesity

Curti, Maira Ladeia R ML; Jacob, Patrícia P; Borges, Maria Carolina MC; Rogero, Marcelo Macedo MM; Ferreira, Sandra Roberta G SR

Publication Date: 2011

Variant appearance in text: TG: Ala12Ala

PubMed Link: 21773006

Variant Present in the following documents:

• Main text
• JOBES2011-497401.pdf

View BVdb publication page

---

Association of PPARγ2 (Pro12Ala) and neuropeptide Y (Leu7Pro) gene polymorphisms with obstructive sleep apnea in obese Asian Indians.

Disease Markers

Bhushan, Bharat B; Guleria, Randeep R; Misra, Anoop A; Luthra, Kalpana K; Kumar, Guresh G

Publication Date: 2011

Variant appearance in text: TG: Ala12Ala

PubMed Link: 21508507

Variant Present in the following documents:

• DM30-01-410397.pdf

View BVdb publication page

---

Impact of the Pro12Ala polymorphism of the PPAR-Gamma 2 gene on metabolic and clinical characteristics in the Palestinian type 2 diabetic patients.

Ppar Research

Ereqat, S S; Nasereddin, A A; Azmi, K K; Abdeen, Z Z; Amin, R R

Publication Date: 2009

Variant appearance in text: TG: A12A

PubMed Link: 19859551

Variant Present in the following documents:

• Main text
• PPAR2009-874126.pdf

View BVdb publication page

---

Compensation by the muscle limits the metabolic consequences of lipodystrophy in PPAR gamma hypomorphic mice.

Proceedings Of The National Academy Of Sciences Of The United States Of America

Koutnikova, Hana H; Cock, Terrie-Anne TA; Watanabe, Mitsuhiro M; Houten, Sander M SM; Champy, Marie-France MF; Dierich, Andreé A; Auwerx, Johan J

Publication Date: 2003-11-25

Variant appearance in text: TG: Ala12Ala

PubMed Link: 14603033

Variant Present in the following documents:

• Main text

View BVdb publication page

---