Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: T40I

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Evolution of the SARS-CoV-2 mutational spectrum.

Molecular Biology And Evolution

Bloom, Jesse D JD; Beichman, Annabel C AC; Neher, Richard A RA; Harris, Kelley K

Publication Date: 2023-04-11

Variant appearance in text: TG: T40I

PubMed Link: 37039557

Variant Present in the following documents:

• msad085.pdf

View BVdb publication page

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Evolution of the SARS-CoV-2 mutational spectrum.

Biorxiv : The Preprint Server For Biology

Bloom, Jesse D JD; Beichman, Annabel C AC; Neher, Richard A RA; Harris, Kelley K

Publication Date: 2022-11-21

Variant appearance in text: TG: T40I

PubMed Link: 36451887

Variant Present in the following documents:

• nihpp-2022.11.19.517207v1.pdf

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Prevalence estimates of putatively pathogenic leptin variants in the gnomAD database.

Plos One

Rajcsanyi, Luisa Sophie LS; Zheng, Yiran Y; Fischer-Posovszky, Pamela P; Wabitsch, Martin M; Hebebrand, Johannes J; Hinney, Anke A

Publication Date: 2022

Variant appearance in text: TG: Thr40Ile

PubMed Link: 36121795

Variant Present in the following documents:

• pone.0266642.s001.xlsx, sheet 1

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Monitoring of the SARS-CoV-2 Omicron BA.1/BA.2 lineage transition in the Swedish population reveals increased viral RNA levels in BA.2 cases.

Med (New York, N.Y.)

Lentini, Antonio A; Pereira, Antonio A; Winqvist, Ola O; Reinius, Björn B

Publication Date: 2022-09-09

Variant appearance in text: TG: T40I

PubMed Link: 35981541

Variant Present in the following documents:

• mmc7.xlsx, sheet 1

View BVdb publication page

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Temporal changes in the accessory protein mutations of SARS-CoV-2 variants and their predicted structural and functional effects.

Journal Of Medical Virology

Cruz, Christian Alfredo K CAK; Medina, Paul Mark B PMB

Publication Date: 2022-11

Variant appearance in text: TG: T40I

PubMed Link: 35764775

Variant Present in the following documents:

• JMV-9999-0.pdf

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Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic.

Plos One

Yavarian, Jila J; Nejati, Ahmad A; Salimi, Vahid V; Shafiei Jandaghi, Nazanin Zahra NZ; Sadeghi, Kaveh K; Abedi, Adel A; Sharifi Zarchi, Ali A; Gouya, Mohammad Mehdi MM; Mokhtari-Azad, Talat T

Publication Date: 2022

Variant appearance in text: TG: T40I

PubMed Link: 35499994

Variant Present in the following documents:

• pone.0267847.pdf

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Emergence of Within-Host SARS-CoV-2 Recombinant Genome After Coinfection by Gamma and Delta Variants: A Case Report.

Frontiers In Public Health

Francisco Junior, Ronaldo da Silva RDS; de Almeida, Luiz G P LGP; Lamarca, Alessandra P AP; Cavalcante, Liliane L; Martins, Yasmmin Y; Gerber, Alexandra L AL; Guimarães, Ana Paula de C APC; Salviano, Ricardo Barbosa RB; Dos Santos, Fernanda Leitão FL; de Oliveira, Thiago Henrique TH; de Souza, Isabelle Vasconcellos IV; de Carvalho, Erika Martins EM; Ribeiro, Mario Sergio MS; Carvalho, Silvia S; da Silva, Flávio Dias FD; Garcia, Marcio Henrique de Oliveira MHO; de Souza, Leandro Magalhães LM; da Silva, Cristiane Gomes CG; Ribeiro, Caio Luiz Pereira CLP; Cavalcanti, Andréa Cony AC; de Mello, Claudia Maria Braga CMB; Tanuri, Amilcar A; Vasconcelos, Ana Tereza R ATR

Publication Date: 2022

Variant appearance in text: TG: T40I

PubMed Link: 35273945

Variant Present in the following documents:

• fpubh-10-849978.pdf

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A SARS-CoV-2 Delta variant containing mutation in the probe binding region used for RT-qPCR test in Japan exhibited atypical PCR amplification and might induce false negative result.

Journal Of Infection And Chemotherapy : Official Journal Of The Japan Society Of Chemotherapy

Rajib, Samiul Alam SA; Ogi, Yasuhiro Y; Hossain, Md Belal MB; Ikeda, Terumasa T; Tanaka, Eiichi E; Kawaguchi, Tatsuya T; Satou, Yorifumi Y

Publication Date: 2022-05

Variant appearance in text: TG: T40I

PubMed Link: 35144878

Variant Present in the following documents:

• mmc2.xls, sheet 1

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The rise and spread of the SARS-CoV-2 AY.122 lineage in Russia.

Medrxiv : The Preprint Server For Health Sciences

Klink, Galya V GV; Safina, Ksenia K; Nabieva, Elena E; Shvyrev, Nikita N; Garushyants, Sofya S; Alekseeva, Evgeniia E; Komissarov, Andrey B AB; Danilenko, Daria M DM; Pochtovyi, Andrei A AA; Divisenko, Elizaveta V EV; Vasilchenko, Lyudmila A LA; Shidlovskaya, Elena V EV; Kuznetsova, Nadezhda A NA; , ; Samoilov, Andrei E AE; Neverov, Alexey D AD; Popova, Anfisa V AV; Fedonin, Gennady G GG; , ; Akimkin, Vasiliy G VG; Lioznov, Dmitry D; Gushchin, Vladimir A VA; Shchur, Vladimir V; Bazykin, Georgii A GA

Publication Date: 2021-12-05

Variant appearance in text: TG: T40I

PubMed Link: 34909799

Variant Present in the following documents:

• nihpp-2021.12.02.21267168v1.pdf

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2022-01-15

Variant appearance in text: TG: T40I

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2021-11-22

Variant appearance in text: TG: T40I

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.

Journal Of Translational Medicine

Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M

Publication Date: 2020-12-30

Variant appearance in text: TG: Thr40Ile

PubMed Link: 33380328

Variant Present in the following documents:

• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: TG: T40I

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

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