Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: 216T>C

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: TG: 216T>C

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8

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Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports

Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-10-14

Variant appearance in text: TG: C72C

PubMed Link: 36241656

Variant Present in the following documents:

• 41598_2022_20939_MOESM8_ESM.xlsx, sheet 2

View BVdb publication page

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Interleukin-7 receptor α mutational activation can initiate precursor B-cell acute lymphoblastic leukemia.

Nature Communications

Almeida, Afonso R M ARM; Neto, João L JL; Cachucho, Ana A; Euzébio, Mayara M; Meng, Xiangyu X; Kim, Rathana R; Fernandes, Marta B MB; Raposo, Beatriz B; Oliveira, Mariana L ML; Ribeiro, Daniel D; Fragoso, Rita R; Zenatti, Priscila P PP; Soares, Tiago T; de Matos, Mafalda R MR; Corrêa, Juliana Ronchi JR; Duque, Mafalda M; Roberts, Kathryn G KG; Gu, Zhaohui Z; Qu, Chunxu C; Pereira, Clara C; Pyne, Susan S; Pyne, Nigel J NJ; Barreto, Vasco M VM; Bernard-Pierrot, Isabelle I; Clappier, Emannuelle E; Mullighan, Charles G CG; Grosso, Ana R AR; Yunes, J Andrés JA; Barata, João T JT

Publication Date: 2021-12-14

Variant appearance in text: TG: Cys72Cys

PubMed Link: 34907175

Variant Present in the following documents:

• 41467_2021_27197_MOESM10_ESM.xlsx, sheet 1

View BVdb publication page

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Interleukin-7 receptor α mutational activation can initiate precursor B-cell acute lymphoblastic leukemia.

Nature Communications

Almeida, Afonso R M ARM; Neto, João L JL; Cachucho, Ana A; Euzébio, Mayara M; Meng, Xiangyu X; Kim, Rathana R; Fernandes, Marta B MB; Raposo, Beatriz B; Oliveira, Mariana L ML; Ribeiro, Daniel D; Fragoso, Rita R; Zenatti, Priscila P PP; Soares, Tiago T; de Matos, Mafalda R MR; Corrêa, Juliana Ronchi JR; Duque, Mafalda M; Roberts, Kathryn G KG; Gu, Zhaohui Z; Qu, Chunxu C; Pereira, Clara C; Pyne, Susan S; Pyne, Nigel J NJ; Barreto, Vasco M VM; Bernard-Pierrot, Isabelle I; Clappier, Emannuelle E; Mullighan, Charles G CG; Grosso, Ana R AR; Yunes, J Andrés JA; Barata, João T JT

Publication Date: 2021-12-14

Variant appearance in text: TG: Cys72Cys

PubMed Link: 34907175

Variant Present in the following documents:

• 41467_2021_27197_MOESM10_ESM.xlsx, sheet 1

View BVdb publication page

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: TG: 216T>C

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Facilitating better postnatal care with women-held documents in The Gambia: a mixed-methods study.

Bmc Pregnancy And Childbirth

Gooden, Tiffany T; Gustafsson, Lotta L; Lu, Fides F; Rickard, Faith F; Sitch, Alice A; Cummins, Carole C; Manneh, Kebba K; Wilson, Amie A; MacArthur, Christine C; Manaseki-Holland, Semira S

Publication Date: 2021-07-02

Variant appearance in text: TG: C72C

PubMed Link: 34215197

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity.

Plos Pathogens

Lood, Cédric C; Peeters, Charlotte C; Lamy-Besnier, Quentin Q; Wagemans, Jeroen J; De Vos, Daniel D; Proesmans, Marijke M; Pirnay, Jean-Paul JP; Echahidi, Fedoua F; Piérard, Denis D; Thimmesch, Matthieu M; Boeras, Anca A; Lagrou, Katrien K; De Canck, Evelien E; De Wachter, Elke E; van Noort, Vera V; Lavigne, Rob R; Vandamme, Peter P

Publication Date: 2021-03

Variant appearance in text: TG: 216T>C

PubMed Link: 33720991

Variant Present in the following documents:

• ppat.1009418.s005.xlsx, sheet 9

View BVdb publication page

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Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.

Journal Of Translational Medicine

Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M

Publication Date: 2020-12-30

Variant appearance in text: TG: 216T>C

PubMed Link: 33380328

Variant Present in the following documents:

• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: TG: 216T>C

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

View BVdb publication page

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Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.

G3 (Bethesda, Md.)

Vale-Silva, Luis L; Beaudoing, Emmanuel E; Tran, Van Du T VDT; Sanglard, Dominique D

Publication Date: 2017-08-07

Variant appearance in text: TG: 216T>C

PubMed Link: 28663342

Variant Present in the following documents:

• 2413FileS2.xlsx, sheet 1

View BVdb publication page

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Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: TG: 216T>C

PubMed Link: 28231761

Variant Present in the following documents:

• 12864_2017_3524_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: TG: 216T>C

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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