Scalable RT-LAMP-based SARS-CoV-2 testing for infection surveillance with applications in pandemic preparedness.
Embo Reports
Lou, Dan D; Meurer, Matthias M; Ovchinnikova, Svetlana S; Burk, Robin R; Denzler, Anna A; Herbst, Konrad K; Papaioannou, Ioannis A IA; Duan, Yuanqiang Y; Jacobs, Max L ML; Witte, Victoria V; Ürge, Daniel D; Kirrmaier, Daniel D; Krogemann, Michelle M; Gubicza, Krisztina K; Boerner, Kathleen K; Bundschuh, Christian C; Weidner, Niklas M NM; Merle, Uta U; Knorr, Britta B; Welker, Andreas A; Denkinger, Claudia M CM; Schnitzler, Paul P; Kräusslich, Hans-Georg HG; Dao Thi, Viet Loan VL; De Allegri, Manuela M; Nguyen, Hoa Thi HT; Deckert, Andreas A; Anders, Simon S; Knop, Michael M
Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.
Communications Biology
Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M
Genomic evolution towards azole resistance in Candida glabrata clinical isolates unveils the importance of CgHxt4/6/7 in azole accumulation.
Communications Biology
Galocha, Mónica M; Viana, Romeu R; Pais, Pedro P; Silva-Dias, Ana A; Cavalheiro, Mafalda M; Miranda, Isabel M IM; Van Ende, Mieke M; Souza, Caio S CS; Costa, Catarina C; Branco, Joana J; Soares, Cláudio M CM; Van Dijck, Patrick P; Rodrigues, Acácio G AG; Teixeira, Miguel C MC
A SARS-CoV-2 Delta variant containing mutation in the probe binding region used for RT-qPCR test in Japan exhibited atypical PCR amplification and might induce false negative result.
Journal Of Infection And Chemotherapy : Official Journal Of The Japan Society Of Chemotherapy
Context-specific emergence and growth of the SARS-CoV-2 Delta variant.
Research Square
McCrone, John T JT; Hill, Verity V; Bajaj, Sumali S; Pena, Rosario Evans RE; Lambert, Ben C BC; Inward, Rhys R; Bhatt, Samir S; Volz, Erik E; Ruis, Christopher C; Dellicour, Simon S; Baele, Guy G; Zarebski, Alexander E AE; Sadilek, Adam A; Wu, Neo N; Schneider, Aaron A; Ji, Xiang X; Raghwani, Jayna J; Jackson, Ben B; Colquhoun, Rachel R; O'Toole, Áine Á; Peacock, Thomas P TP; Twohig, Kate K; Thelwall, Simon S; Dabrera, Gavin G; Myers, Richard R; , ; Faria, Nuno R NR; Huber, Carmen C; Bogoch, Isaac I II; Khan, Kamran K; du Plessis, Louis L; Barrett, Jeffrey C JC; Aanensen, David M DM; Barclay, Wendy S WS; Chand, Meera M; Connor, Thomas T; Loman, Nicholas J NJ; Suchard, Marc A MA; Pybus, Oliver G OG; Rambaut, Andrew A; Kraemer, Moritz U G MUG
Context-specific emergence and growth of the SARS-CoV-2 Delta variant.
Research Square
Kraemer, Moritz M; McCrone, John J; Hill, Verity V; Bajaj, Sumali S; Evans-Pena, Rosario R; Lambert, Ben B; Inward, Rhys R; Bhatt, Samir S; Volz, Erik E; Ruis, Christopher C; Dellicour, Simon S; Baele, Guy G; Zarebski, Alexander A; Sadilek, Adam A; Wu, Neo N; Schneider, Aaron A; Ji, Xiang X; Raghwani, Jayna J; Jackson, Ben B; Colquhoun, Rachel R; O'Toole, Aine A; Peacock, Thomas T; Twohig, Kate K; Thelwall, Simon S; Dabrera, Gavin G; Meyers, Richard R; Faria, Nuno N; Huber, Carmen C; Khan, Kamran K; Bogoch, Isaac I; Plessis, Louis L; Barrett, Jeffrey J; Aanensen, David D; Barclay, Wendy W; Chand, Meera M; Connor, Thomas T; Loman, Nicholas N; Suchard, Marc M; Pybus, Oliver O; Rambaut, Andrew A
Re-emergence of Gamma-like-II and emergence of Gamma-S:E661D SARS-CoV-2 lineages in the south of Brazil after the 2021 outbreak.
Virology Journal
Oliveira, Mauro M MM; Schemberger, Michelle O MO; Suzukawa, Andreia A AA; Riediger, Irina N IN; do Carmo Debur, Maria M; Becker, Guilherme G; Resende, Paola Cristina PC; Gräf, Tiago T; Balsanelli, Eduardo E; de Baura, Valter Antônio VA; de Souza, Emanuel M EM; Pedrosa, Fábio O FO; Alves, Lysangela R LR; Blanes, Lucas L; Nardelli, Sheila Cristina SC; Aguiar, Alessandra M AM; Albrecht, Letusa L; Zanette, Dalila D; Ávila, Andréa R AR; Morello, Luis Gustavo LG; Marchini, Fabricio K FK; Dos Santos, Hellen G HG; Passetti, Fabio F; Dallagiovanna, Bruno B; Faoro, Helisson H
Molecular and functional profiling identifies therapeutically targetable vulnerabilities in plasmablastic lymphoma.
Nature Communications
Frontzek, Fabian F; Staiger, Annette M AM; Zapukhlyak, Myroslav M; Xu, Wendan W; Bonzheim, Irina I; Borgmann, Vanessa V; Sander, Philip P; Baptista, Maria Joao MJ; Heming, Jan-Niklas JN; Berning, Philipp P; Wullenkord, Ramona R; Erdmann, Tabea T; Lutz, Mathias M; Veratti, Pia P; Ehrenfeld, Sophia S; Wienand, Kirsty K; Horn, Heike H; Goodlad, John R JR; Wilson, Matthew R MR; Anagnostopoulos, Ioannis I; Lamping, Mario M; Gonzalez-Barca, Eva E; Climent, Fina F; Salar, Antonio A; Castellvi, Josep J; Abrisqueta, Pau P; Menarguez, Javier J; Aldamiz, Teresa T; Richter, Julia J; Klapper, Wolfram W; Tzankov, Alexandar A; Dirnhofer, Stefan S; Rosenwald, Andreas A; Mate, José Luis JL; Tapia, Gustavo G; Lenz, Peter P; Miething, Cornelius C; Hartmann, Wolfgang W; Chapuy, Björn B; Fend, Falko F; Ott, German G; Navarro, José-Tomas JT; Grau, Michael M; Lenz, Georg G
SARS-CoV-2 worldwide replication drives rapid rise and selection of mutations across the viral genome: a time-course study - potential challenge for vaccines and therapies.
Embo Molecular Medicine
Weber, Stefanie S; Ramirez, Christina M CM; Weiser, Barbara B; Burger, Harold H; Doerfler, Walter W
SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia.
Mbio
Everett, John J; Hokama, Pascha P; Roche, Aoife M AM; Reddy, Shantan S; Hwang, Young Y; Kessler, Lyanna L; Glascock, Abigail A; Li, Yize Y; Whelan, Jillian N JN; Weiss, Susan R SR; Sherrill-Mix, Scott S; McCormick, Kevin K; Whiteside, Samantha A SA; Graham-Wooten, Jevon J; Khatib, Layla A LA; Fitzgerald, Ayannah S AS; Collman, Ronald G RG; Bushman, Frederic F
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
Integrated genomic analyses reveal frequent TERT aberrations in acral melanoma.
Genome Research
Liang, Winnie S WS; Hendricks, William W; Kiefer, Jeffrey J; Schmidt, Jessica J; Sekar, Shobana S; Carpten, John J; Craig, David W DW; Adkins, Jonathan J; Cuyugan, Lori L; Manojlovic, Zarko Z; Halperin, Rebecca F RF; Helland, Adrienne A; Nasser, Sara S; Legendre, Christophe C; Hurley, Laurence H LH; Sivaprakasam, Karthigayini K; Johnson, Douglas B DB; Crandall, Holly H; Busam, Klaus J KJ; Zismann, Victoria V; Deluca, Valerie V; Lee, Jeeyun J; Sekulic, Aleksandar A; Ariyan, Charlotte E CE; Sosman, Jeffrey J; Trent, Jeffrey J
A highly recurrent RPS27 5'UTR mutation in melanoma.
Oncotarget
Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y
Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.
Nature Genetics
Dulak, Austin M AM; Stojanov, Petar P; Peng, Shouyong S; Lawrence, Michael S MS; Fox, Cameron C; Stewart, Chip C; Bandla, Santhoshi S; Imamura, Yu Y; Schumacher, Steven E SE; Shefler, Erica E; McKenna, Aaron A; Carter, Scott L SL; Cibulskis, Kristian K; Sivachenko, Andrey A; Saksena, Gordon G; Voet, Douglas D; Ramos, Alex H AH; Auclair, Daniel D; Thompson, Kristin K; Sougnez, Carrie C; Onofrio, Robert C RC; Guiducci, Candace C; Beroukhim, Rameen R; Zhou, Zhongren Z; Lin, Lin L; Lin, Jules J; Reddy, Rishindra R; Chang, Andrew A; Landrenau, Rodney R; Pennathur, Arjun A; Ogino, Shuji S; Luketich, James D JD; Golub, Todd R TR; Gabriel, Stacey B SB; Lander, Eric S ES; Beer, David G DG; Godfrey, Tony E TE; Getz, Gad G; Bass, Adam J AJ