Publications:

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The relative prevalence of the Omicron variant within SARS-CoV-2 infected cohorts in different countries: A systematic review.

Human Vaccines & Immunotherapeutics

Sarkar, Aparajita A; Omar, Sara S; Alshareef, Aya A; Fanous, Kareem K; Sarker, Shaunak S; Alroobi, Hasan H; Zamir, Fahad F; Yousef, Mahmoud M; Zakaria, Dalia D

Publication Date: 2023-12-31

Variant appearance in text: TG: S373P

PubMed Link: 37254497

Variant Present in the following documents:

• KHVI_19_2212568.pdf

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Different configurations of SARS-CoV-2 spike protein delivered by integrase-defective lentiviral vectors induce persistent functional immune responses, characterized by distinct immunogenicity profiles.

Frontiers In Immunology

Borghi, Martina M; Gallinaro, Alessandra A; Pirillo, Maria Franca MF; Canitano, Andrea A; Michelini, Zuleika Z; De Angelis, Maria Laura ML; Cecchetti, Serena S; Tinari, Antonella A; Falce, Chiara C; Mariotti, Sabrina S; Capocefalo, Antonio A; Chiantore, Maria Vincenza MV; Iacobino, Angelo A; Di Virgilio, Antonio A; van Gils, Marit J MJ; Sanders, Rogier W RW; Lo Presti, Alessandra A; Nisini, Roberto R; Negri, Donatella D; Cara, Andrea A

Publication Date: 2023

Variant appearance in text: TG: S373P

PubMed Link: 37090707

Variant Present in the following documents:

• fimmu-14-1147953.pdf

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: 1117T>C

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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High-throughput screening of spike variants uncovers the key residues that alter the affinity and antigenicity of SARS-CoV-2.

Cell Discovery

Luo, Yufeng Y; Liu, Shuo S; Xue, Jiguo J; Yang, Ye Y; Zhao, Junxuan J; Sun, Ying Y; Wang, Bolun B; Yin, Shenyi S; Li, Juan J; Xia, Yuchao Y; Ge, Feixiang F; Dong, Jiqiao J; Guo, Lvze L; Ye, Buqing B; Huang, Weijin W; Wang, Youchun Y; Xi, Jianzhong Jeff JJ

Publication Date: 2023-04-11

Variant appearance in text: TG: S373P

PubMed Link: 37041132

Variant Present in the following documents:

• 41421_2023_534_MOESM1_ESM.pdf

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Covid-19: virology, variants, and vaccines.

Bmj Medicine

Young, Megan M; Crook, Harry H; Scott, Janet J; Edison, Paul P

Publication Date: 2022

Variant appearance in text: TG: S373P

PubMed Link: 36936563

Variant Present in the following documents:

• bmjmed-2021-000040.draft_revisions.pdf

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Molecular Characterization of AZD7442 (Tixagevimab-Cilgavimab) Neutralization of SARS-CoV-2 Omicron Subvariants.

Microbiology Spectrum

Roe, Tiffany L TL; Brady, Tyler T; Schuko, Nicolette N; Nguyen, Amy A; Beloor, Jagadish J; Guest, Johnathan D JD; Aksyuk, Anastasia A AA; Tuffy, Kevin M KM; Zhang, Tianhui T; Streicher, Katie K; Kelly, Elizabeth J EJ; Kijak, Gustavo H GH

Publication Date: 2023-03-06

Variant appearance in text: TG: S373P

PubMed Link: 36877050

Variant Present in the following documents:

• spectrum.00333-23.pdf

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: TG: 1117T>C; Ser373Pro

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9

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SARS-CoV-2 Spike Protein Mutation at Cysteine-488 Impairs Its Golgi Localization and Intracellular S1/S2 Processing.

International Journal Of Molecular Sciences

Yamamoto, Yuichiro Y; Inoue, Tetsuya T; Inoue, Miyu M; Murae, Mana M; Fukasawa, Masayoshi M; Kaneko, Mika K MK; Kato, Yukinari Y; Noguchi, Kohji K

Publication Date: 2022-12-13

Variant appearance in text: TGN: S373P

PubMed Link: 36555473

Variant Present in the following documents:

• ijms-23-15834.pdf

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A highly sensitive bead-based flow cytometric competitive binding assay to detect SARS-CoV-2 neutralizing antibody activity.

Frontiers In Immunology

Yao, Xiangyu X; Zhang, Zhichao Z; Mei, Qingmin Q; Li, Shenwei S; Xing, Li L; Long, Yali Y; Zhang, Demei D; Wang, Jing J; Wang, Xiedong X; Xie, Bin B; Yang, Bo B; Gao, Yong Y; Wu, Changxin C; Meng, Qinglai Q

Publication Date: 2022

Variant appearance in text: TG: S373P

PubMed Link: 36532082

Variant Present in the following documents:

• fimmu-13-1041860.pdf

View BVdb publication page

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Global challenge with the SARS-CoV-2 omicron BA.2 (B.1.1.529.2) subvariant: Should we be concerned?

World Journal Of Virology

Roohani, Jalil J; Keikha, Masoud M

Publication Date: 2022-11-25

Variant appearance in text: TG: S373P

PubMed Link: 36483099

Variant Present in the following documents:

• WJV-11-496.pdf

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An ACE2 decoy can be administered by inhalation and potently targets omicron variants of SARS-CoV-2.

Embo Molecular Medicine

Zhang, Lianghui L; Narayanan, Krishna K KK; Cooper, Laura L; Chan, Kui K KK; Skeeters, Savanna S SS; Devlin, Christine A CA; Aguhob, Aaron A; Shirley, Kristie K; Rong, Lijun L; Rehman, Jalees J; Malik, Asrar B AB; Procko, Erik E

Publication Date: 2022-11-08

Variant appearance in text: TG: S373P

PubMed Link: 36094679

Variant Present in the following documents:

• EMMM-9999-0-s003.pdf
• EMMM-9999-0.pdf

View BVdb publication page

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Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.

Nature Genetics

Zhou, Xueya X; Feliciano, Pamela P; Shu, Chang C; Wang, Tianyun T; Astrovskaya, Irina I; Hall, Jacob B JB; Obiajulu, Joseph U JU; Wright, Jessica R JR; Murali, Shwetha C SC; Xu, Simon Xuming SX; Brueggeman, Leo L; Thomas, Taylor R TR; Marchenko, Olena O; Fleisch, Christopher C; Barns, Sarah D SD; Snyder, LeeAnne Green LG; Han, Bing B; Chang, Timothy S TS; Turner, Tychele N TN; Harvey, William T WT; Nishida, Andrew A; O'Roak, Brian J BJ; Geschwind, Daniel H DH; , ; Michaelson, Jacob J JJ; Volfovsky, Natalia N; Eichler, Evan E EE; Shen, Yufeng Y; Chung, Wendy K WK

Publication Date: 2022-09

Variant appearance in text: TG: 1117T>C

PubMed Link: 35982159

Variant Present in the following documents:

• 41588_2022_1148_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Monitoring of the SARS-CoV-2 Omicron BA.1/BA.2 lineage transition in the Swedish population reveals increased viral RNA levels in BA.2 cases.

Med (New York, N.Y.)

Lentini, Antonio A; Pereira, Antonio A; Winqvist, Ola O; Reinius, Björn B

Publication Date: 2022-09-09

Variant appearance in text: TG: S373P

PubMed Link: 35981541

Variant Present in the following documents:

• mmc7.xlsx, sheet 1

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Shared N417-Dependent Epitope on the SARS-CoV-2 Omicron, Beta, and Delta Plus Variants.

Journal Of Virology

Moyo-Gwete, Thandeka T; Madzivhandila, Mashudu M; Mkhize, Nonhlanhla N NN; Kgagudi, Prudence P; Ayres, Frances F; Lambson, Bronwen E BE; Manamela, Nelia P NP; Richardson, Simone I SI; Makhado, Zanele Z; van der Mescht, Mieke A MA; de Beer, Zelda Z; de Villiers, Talita Roma TR; Burgers, Wendy A WA; Ntusi, Ntobeko A B NAB; Rossouw, Theresa T; Ueckermann, Veronica V; Boswell, Michael T MT; Moore, Penny L PL

Publication Date: 2022-08-10

Variant appearance in text: TG: S373P

PubMed Link: 35867572

Variant Present in the following documents:

• jvi.00558-22.pdf

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Dynamics of the interaction between the receptor-binding domain of SARS-CoV-2 Omicron (B.1.1.529) variant and human angiotensin-converting enzyme 2.

Peerj

Antony, Priya P; Jobe, Amie A; Vijayan, Ranjit R

Publication Date: 2022

Variant appearance in text: TG: S373P

PubMed Link: 35811809

Variant Present in the following documents:

• peerj-10-13680.pdf

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Functional mutations of SARS-CoV-2: implications to viral transmission, pathogenicity and immune escape.

Chinese Medical Journal

Dang, Shengyuan S; Ren, Lili L; Wang, Jianwei J

Publication Date: 2022-05-20

Variant appearance in text: TG: S373P

PubMed Link: 35788093

Variant Present in the following documents:

• cm9-135-1213.pdf

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SARS-CoV-2 Omicron Variants Reduce Antibody Neutralization and Acquire Usage of Mouse ACE2.

Frontiers In Immunology

Wang, Ruoke R; Zhang, Qi Q; Zhang, Rui R; Aw, Zhen Qin ZQ; Chen, Peng P; Wong, Yi Hao YH; Hong, Junxian J; Ju, Bin B; Shi, Xuanling X; Ding, Qiang Q; Zhang, Zheng Z; Chu, Justin Jang Hann JJH; Zhang, Linqi L

Publication Date: 2022

Variant appearance in text: TG: S373P

PubMed Link: 35784344

Variant Present in the following documents:

• fimmu-13-854952.pdf

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Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains.

Nature Communications

Case, James Brett JB; Mackin, Samantha S; Errico, John M JM; Chong, Zhenlu Z; Madden, Emily A EA; Whitener, Bradley B; Guarino, Barbara B; Schmid, Michael A MA; Rosenthal, Kim K; Ren, Kuishu K; Dang, Ha V HV; Snell, Gyorgy G; Jung, Ana A; Droit, Lindsay L; Handley, Scott A SA; Halfmann, Peter J PJ; Kawaoka, Yoshihiro Y; Crowe, James E JE; Fremont, Daved H DH; Virgin, Herbert W HW; Loo, Yueh-Ming YM; Esser, Mark T MT; Purcell, Lisa A LA; Corti, Davide D; Diamond, Michael S MS

Publication Date: 2022-07-02

Variant appearance in text: TG: S373P

PubMed Link: 35780162

Variant Present in the following documents:

• 41467_2022_31615_MOESM1_ESM.pdf

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Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing.

Microbiology Spectrum

Nasereddin, Abdelmajeed A; Golan Berman, Hadar H; Wolf, Dana G DG; Oiknine-Djian, Esther E; Adar, Sheera S

Publication Date: 2022-08-31

Variant appearance in text: TG: S373P

PubMed Link: 35758686

Variant Present in the following documents:

• spectrum.00736-22.pdf

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BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection.

Nature

Cao, Yunlong Y; Yisimayi, Ayijiang A; Jian, Fanchong F; Song, Weiliang W; Xiao, Tianhe T; Wang, Lei L; Du, Shuo S; Wang, Jing J; Li, Qianqian Q; Chen, Xiaosu X; Yu, Yuanling Y; Wang, Peng P; Zhang, Zhiying Z; Liu, Pulan P; An, Ran R; Hao, Xiaohua X; Wang, Yao Y; Wang, Jing J; Feng, Rui R; Sun, Haiyan H; Zhao, Lijuan L; Zhang, Wen W; Zhao, Dong D; Zheng, Jiang J; Yu, Lingling L; Li, Can C; Zhang, Na N; Wang, Rui R; Niu, Xiao X; Yang, Sijie S; Song, Xuetao X; Chai, Yangyang Y; Hu, Ye Y; Shi, Yansong Y; Zheng, Linlin L; Li, Zhiqiang Z; Gu, Qingqing Q; Shao, Fei F; Huang, Weijin W; Jin, Ronghua R; Shen, Zhongyang Z; Wang, Youchun Y; Wang, Xiangxi X; Xiao, Junyu J; Xie, Xiaoliang Sunney XS

Publication Date: 2022-08

Variant appearance in text: TG: S373P

PubMed Link: 35714668

Variant Present in the following documents:

• 41586_2022_Article_4980.pdf

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From the Wuhan-Hu-1 strain to the XD and XE variants: is targeting the SARS-CoV-2 spike protein still a pharmaceutically relevant option against COVID-19?

Journal Of Enzyme Inhibition And Medicinal Chemistry

Pavan, Matteo M; Bassani, Davide D; Sturlese, Mattia M; Moro, Stefano S

Publication Date: 2022-12

Variant appearance in text: TG: S373P

PubMed Link: 35695095

Variant Present in the following documents:

• IENZ_37_2081847.pdf

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ACE2 decoy receptor generated by high-throughput saturation mutagenesis efficiently neutralizes SARS-CoV-2 and its prevalent variants.

Emerging Microbes & Infections

Wang, Bolun B; Zhao, Junxuan J; Liu, Shuo S; Feng, Jingyuan J; Luo, Yufeng Y; He, Xinyu X; Wang, Yanmin Y; Ge, Feixiang F; Wang, Junyi J; Ye, Buqing B; Huang, Weijin W; Bo, Xiaochen X; Wang, Youchun Y; Xi, Jianzhong Jeff JJ

Publication Date: 2022-12

Variant appearance in text: TG: S373P

PubMed Link: 35587428

Variant Present in the following documents:

• TEMI_11_2079426.pdf

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Discovery of adapalene and dihydrotachysterol as antiviral agents for the Omicron variant of SARS-CoV-2 through computational drug repurposing.

Molecular Diversity

Fidan, Ozkan O; Mujwar, Somdutt S; Kciuk, Mateusz M

Publication Date: 2022-05-04

Variant appearance in text: TG: S373P

PubMed Link: 35507211

Variant Present in the following documents:

• 11030_2022_Article_10440.pdf

View BVdb publication page

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Advanced Functions Embedded in the Second Version of Database, Global Evaluation of SARS-CoV-2/hCoV-19 Sequences 2.

Frontiers In Medicine

Li, Kailing K; Wang, Audrey K Y AKY; Liu, Sheng S; Fang, Shuyi S; Lu, Alex Z AZ; Shen, Jikui J; Yang, Lei L; Hu, Chang-Deng CD; Yang, Kai K; Wan, Jun J

Publication Date: 2022

Variant appearance in text: TG: S373P

PubMed Link: 35479940

Variant Present in the following documents:

• fmed-09-813964.pdf

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Update on SARS-CoV-2 Omicron Variant of Concern and Its Peculiar Mutational Profile.

Microbiology Spectrum

Alkhatib, Mohammad M; Salpini, Romina R; Carioti, Luca L; Ambrosio, Francesca Alessandra FA; D'Anna, Stefano S; Duca, Leonardo L; Costa, Giosuè G; Bellocchi, Maria Concetta MC; Piermatteo, Lorenzo L; Artese, Anna A; Santoro, Maria Mercedes MM; Alcaro, Stefano S; Svicher, Valentina V; Ceccherini-Silberstein, Francesca F

Publication Date: 2022-04-27

Variant appearance in text: TG: S373P

PubMed Link: 35352942

Variant Present in the following documents:

• spectrum.02732-21.pdf

View BVdb publication page

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Advances in the Omicron variant development.

Journal Of Internal Medicine

Vitiello, Antonio A; Ferrara, Francesco F; Auti, Amogh M AM; Di Domenico, Marina M; Boccellino, Mariarosaria M

Publication Date: 2022-07

Variant appearance in text: TG: S373P

PubMed Link: 35289434

Variant Present in the following documents:

• JOIM-9999-0.pdf

View BVdb publication page

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Cross-Neutralizing Breadth and Longevity Against SARS-CoV-2 Variants After Infections.

Frontiers In Immunology

Kurahashi, Yukiya Y; Sutandhio, Silvia S; Furukawa, Koichi K; Tjan, Lidya Handayani LH; Iwata, Sachiyo S; Sano, Shigeru S; Tohma, Yoshiki Y; Ohkita, Hiroyuki H; Nakamura, Sachiko S; Nishimura, Mitsuhiro M; Arii, Jun J; Kiriu, Tatsunori T; Yamamoto, Masatsugu M; Nagano, Tatsuya T; Nishimura, Yoshihiro Y; Mori, Yasuko Y

Publication Date: 2022

Variant appearance in text: TG: S373P

PubMed Link: 35281007

Variant Present in the following documents:

• fimmu-13-773652.pdf

View BVdb publication page

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Intratumor genetic heterogeneity and clonal evolution to decode endometrial cancer progression.

Oncogene

Mota, Alba A; Oltra, Sara S SS; Selenica, Pier P; Moiola, Cristian P CP; Casas-Arozamena, Carlos C; López-Gil, Carlos C; Diaz, Eva E; Gatius, Sonia S; Ruiz-Miro, María M; Calvo, Ana A; Rojo-Sebastián, Alejandro A; Hurtado, Pablo P; Piñeiro, Roberto R; Colas, Eva E; Gil-Moreno, Antonio A; Reis-Filho, Jorge S JS; Muinelo-Romay, Laura L; Abal, Miguel M; Matias-Guiu, Xavier X; Weigelt, Britta B; Moreno-Bueno, Gema G

Publication Date: 2022-03

Variant appearance in text: TG: S373P

PubMed Link: 35145232

Variant Present in the following documents:

• 41388_2022_2221_MOESM3_ESM.xlsx, sheet 5

View BVdb publication page

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: TG: 1117T>C

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Quantitative trait locus mapping combined with variant and transcriptome analyses identifies a cluster of gene candidates underlying the variation in leaf wax between upland and lowland switchgrass ecotypes.

Tag. Theoretical And Applied Genetics. Theoretische Und Angewandte Genetik

Qi, Peng P; Pendergast, Thomas H TH; Johnson, Alex A; Bahri, Bochra A BA; Choi, Soyeon S; Missaoui, Ali A; Devos, Katrien M KM

Publication Date: 2021-07

Variant appearance in text: TG: 1117T>C

PubMed Link: 33760937

Variant Present in the following documents:

• 122_2021_3798_MOESM22_ESM.xlsx, sheet 2

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: TG: 1117T>C; Ser373Pro

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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