Publications:

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DNA ultra-sensitive quantification, a technology for studying HIV unintegrated linear DNA.

Cell Reports Methods

Roux, Hélène Marie HM; Figueiredo, Suzanne S; Sareoua, Lucas L; Salmona, Maud M; Hamroune, Juliette J; Adoux, Lucie L; Migraine, Julie J; Hance, Allan A; Clavel, François F; Cheynier, Rémi R; Dutrieux, Jacques J

Publication Date: 2023-04-24

Variant appearance in text: TG: A538A

PubMed Link: 37159665

Variant Present in the following documents:

• mmc2.pdf
• main.pdf

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: TG: 1614T>A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: TG: 1614T>A

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9

View BVdb publication page

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Galaxy Training: A powerful framework for teaching!

Plos Computational Biology

Hiltemann, Saskia S; Rasche, Helena H; Gladman, Simon S; Hotz, Hans-Rudolf HR; Larivière, Delphine D; Blankenberg, Daniel D; Jagtap, Pratik D PD; Wollmann, Thomas T; Bretaudeau, Anthony A; Goué, Nadia N; Griffin, Timothy J TJ; Royaux, Coline C; Le Bras, Yvan Y; Mehta, Subina S; Syme, Anna A; Coppens, Frederik F; Droesbeke, Bert B; Soranzo, Nicola N; Bacon, Wendi W; Psomopoulos, Fotis F; Gallardo-Alba, Cristóbal C; Davis, John J; Föll, Melanie Christine MC; Fahrner, Matthias M; Doyle, Maria A MA; Serrano-Solano, Beatriz B; Fouilloux, Anne Claire AC; van Heusden, Peter P; Maier, Wolfgang W; Clements, Dave D; Heyl, Florian F; , ; Grüning, Björn B; Batut, Bérénice B

Publication Date: 2023-01

Variant appearance in text: TG: A538A

PubMed Link: 36622853

Variant Present in the following documents:

• pcbi.1010752.pdf

View BVdb publication page

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Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.

Nature Genetics

Zhou, Xueya X; Feliciano, Pamela P; Shu, Chang C; Wang, Tianyun T; Astrovskaya, Irina I; Hall, Jacob B JB; Obiajulu, Joseph U JU; Wright, Jessica R JR; Murali, Shwetha C SC; Xu, Simon Xuming SX; Brueggeman, Leo L; Thomas, Taylor R TR; Marchenko, Olena O; Fleisch, Christopher C; Barns, Sarah D SD; Snyder, LeeAnne Green LG; Han, Bing B; Chang, Timothy S TS; Turner, Tychele N TN; Harvey, William T WT; Nishida, Andrew A; O'Roak, Brian J BJ; Geschwind, Daniel H DH; , ; Michaelson, Jacob J JJ; Volfovsky, Natalia N; Eichler, Evan E EE; Shen, Yufeng Y; Chung, Wendy K WK

Publication Date: 2022-09

Variant appearance in text: TG: A538=

PubMed Link: 35982159

Variant Present in the following documents:

• 41588_2022_1148_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: TG: 1614T>A

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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All-trans retinoic acid induces synaptopodin-dependent metaplasticity in mouse dentate granule cells.

Elife

Lenz, Maximilian M; Eichler, Amelie A; Kruse, Pia P; Muellerleile, Julia J; Deller, Thomas T; Jedlicka, Peter P; Vlachos, Andreas A

Publication Date: 2021-11-01

Variant appearance in text: TG: A538A

PubMed Link: 34723795

Variant Present in the following documents:

• elife-71983.pdf

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Genomic stability at the coding regions of the multidrug transporter gene ABCB1: insights into the development of alternative drug resistance mechanisms in human leukemia cells.

Cancer Drug Resistance (Alhambra, Calif.)

Chen, Kevin G KG; Duran, George E GE; Mogul, Mark J MJ; Wang, Yan C YC; Ross, Kevin L KL; Jaffrézou, Jean-Pierre JP; Huff, Lyn M LM; Johnson, Kory R KR; Fojo, Tito T; Lacayo, Norman J NJ; Sikic, Branimir I BI

Publication Date: 2020

Variant appearance in text: TG: 1614T>A

PubMed Link: 34541464

Variant Present in the following documents:

• cdr-3-959-SupplementaryMaterials.xlsx, sheet 4

View BVdb publication page

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Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort.

Scientific Reports

Mathioudaki, Argyri A; Ljungström, Viktor V; Melin, Malin M; Arendt, Maja Louise ML; Nordin, Jessika J; Karlsson, Åsa Å; Murén, Eva E; Saksena, Pushpa P; Meadows, Jennifer R S JRS; Marinescu, Voichita D VD; Sjöblom, Tobias T; Lindblad-Toh, Kerstin K

Publication Date: 2020-11-09

Variant appearance in text: TG: A538A

PubMed Link: 33168853

Variant Present in the following documents:

• 41598_2020_74580_MOESM2_ESM.xlsx, sheet 3

View BVdb publication page

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: TG: Ala538Ala

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

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Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization.

Clinical Proteomics

Föll, Melanie Christine MC; Fahrner, Matthias M; Oria, Victor Oginga VO; Kühs, Markus M; Biniossek, Martin Lothar ML; Werner, Martin M; Bronsert, Peter P; Schilling, Oliver O

Publication Date: 2018

Variant appearance in text: TG: A538A

PubMed Link: 29527141

Variant Present in the following documents:

• 12014_2018_Article_9188.pdf

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Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.

G3 (Bethesda, Md.)

Vale-Silva, Luis L; Beaudoing, Emmanuel E; Tran, Van Du T VDT; Sanglard, Dominique D

Publication Date: 2017-08-07

Variant appearance in text: TG: 1614T>A

PubMed Link: 28663342

Variant Present in the following documents:

• 2413FileS2.xlsx, sheet 1

View BVdb publication page

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Circulating tumour DNA sequence analysis as an alternative to multiple myeloma bone marrow aspirates.

Nature Communications

Kis, Olena O; Kaedbey, Rayan R; Chow, Signy S; Danesh, Arnavaz A; Dowar, Mark M; Li, Tiantian T; Li, Zhihua Z; Liu, Jessica J; Mansour, Mark M; Masih-Khan, Esther E; Zhang, Tong T; Bratman, Scott V SV; Oza, Amit M AM; Kamel-Reid, Suzanne S; Trudel, Suzanne S; Pugh, Trevor J TJ

Publication Date: 2017-05-11

Variant appearance in text: N/A

PubMed Link: 28492226

Variant Present in the following documents:

View BVdb publication page

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