Publications:

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A novel mutation-proof, next-generation vaccine to fight against upcoming SARS-CoV-2 variants and subvariants, designed through AI enabled approaches and tools, along with the machine learning based immune simulation: A vaccine breakthrough.

International Journal Of Biological Macromolecules

Bhattacharya, Manojit M; Alshammari, Abdulrahman A; Alharbi, Metab M; Dhama, Kuldeep K; Lee, Sang-Soo SS; Chakraborty, Chiranjib C

Publication Date: 2023-05-17

Variant appearance in text: TLR4: L18F

PubMed Link: 37207746

Variant Present in the following documents:

• Main text
• main.pdf

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Peptide candidates for the development of therapeutics and vaccines against β-coronavirus infection.

Bioengineered

Chourasia, Rounak R; Padhi, Srichandan S; Phukon, Loreni Chiring LC; Abedin, Md Minhajul MM; Sirohi, Ranjana R; Singh, Sudhir P SP; Rai, Amit Kumar AK

Publication Date: 2022-04

Variant appearance in text: TLR4: L18F

PubMed Link: 35387556

Variant Present in the following documents:

• Main text
• KBIE_13_2060453.pdf

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A SARS-CoV-2 Wuhan spike virosome vaccine induces superior neutralization breadth compared to one using the Beta spike.

Scientific Reports

van der Velden, Yme U YU; Grobben, Marloes M; Caniels, Tom G TG; Burger, Judith A JA; Poniman, Meliawati M; Oomen, Melissa M; Rijnstra, Esther Siteur-van ES; Tejjani, Khadija K; Guerra, Denise D; Kempers, Ronald R; Stegmann, Toon T; van Gils, Marit J MJ; Sanders, Rogier W RW

Publication Date: 2022-03-10

Variant appearance in text: TLR4: L18F

PubMed Link: 35273217

Variant Present in the following documents:

• Main text
• 41598_2022_Article_7590.pdf

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A Next-Generation Vaccine Candidate Using Alternative Epitopes to Protect against Wuhan and All Significant Mutant Variants of SARS-CoV-2: An Immunoinformatics Approach.

Aging And Disease

Bhattacharya, Manojit M; Sharma, Ashish Ranjan AR; Ghosh, Pratik P; Lee, Sang-Soo SS; Chakraborty, Chiranjib C

Publication Date: 2021-12

Variant appearance in text: TLR4: L18F

PubMed Link: 34881093

Variant Present in the following documents:

• Main text

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Phosphate-mediated coanchoring of RBD immunogens and molecular adjuvants to alum potentiates humoral immunity against SARS-CoV-2.

Science Advances

Rodrigues, Kristen A KA; Rodriguez-Aponte, Sergio A SA; Dalvie, Neil C NC; Lee, Jeong Hyun JH; Abraham, Wuhbet W; Carnathan, Diane G DG; Jimenez, Luis E LE; Ngo, Julia T JT; Chang, Jason Y H JYH; Zhang, Zeli Z; Yu, Jingyou J; Chang, Aiquan A; Nakao, Catherine C; Goodwin, Benjamin B; Naranjo, Christopher A CA; Zhang, Libin L; Silva, Murillo M; Barouch, Dan H DH; Silvestri, Guido G; Crotty, Shane S; Love, J Christopher JC; Irvine, Darrell J DJ

Publication Date: 2021-12-10

Variant appearance in text: TLR4: L18F

PubMed Link: 34878851

Variant Present in the following documents:

• Main text
• sciadv.abj6538.pdf

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Phosphate-mediated coanchoring of RBD immunogens and molecular adjuvants to alum potentiates humoral immunity against SARS-CoV-2.

Science Advances

Rodrigues, Kristen A KA; Rodriguez-Aponte, Sergio A SA; Dalvie, Neil C NC; Lee, Jeong Hyun JH; Abraham, Wuhbet W; Carnathan, Diane G DG; Jimenez, Luis E LE; Ngo, Julia T JT; Chang, Jason Y H JYH; Zhang, Zeli Z; Yu, Jingyou J; Chang, Aiquan A; Nakao, Catherine C; Goodwin, Benjamin B; Naranjo, Christopher A CA; Zhang, Libin L; Silva, Murillo M; Barouch, Dan H DH; Silvestri, Guido G; Crotty, Shane S; Love, J Christopher JC; Irvine, Darrell J DJ

Publication Date: 2021-12-10

Variant appearance in text: TLR4: L18F

PubMed Link: 34878851

Variant Present in the following documents:

• Main text
• sciadv.abj6538.pdf

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Application of omics technology to combat the COVID-19 pandemic.

Medcomm

Yang, Jingjing J; Yan, Yunzheng Y; Zhong, Wu W

Publication Date: 2021-09

Variant appearance in text: TLR4: L18F

PubMed Link: 34766152

Variant Present in the following documents:

• Main text

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Mechanism of a COVID-19 nanoparticle vaccine candidate that elicits a broadly neutralizing antibody response to SARS-CoV-2 variants.

Science Advances

Zhang, Yi-Nan YN; Paynter, Jennifer J; Sou, Cindy C; Fourfouris, Tatiana T; Wang, Ying Y; Abraham, Ciril C; Ngo, Timothy T; Zhang, Yi Y; He, Linling L; Zhu, Jiang J

Publication Date: 2021-10-22

Variant appearance in text: TLR4: L18F

PubMed Link: 34669468

Variant Present in the following documents:

• Main text

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Full-Length Recombinant hSP-D Binds and Inhibits SARS-CoV-2.

Biomolecules

Arroyo, Raquel R; Grant, Shawn N SN; Colombo, Miriam M; Salvioni, Lucia L; Corsi, Fabio F; Truffi, Marta M; Ottolina, Davide D; Hurst, Brett B; Salzberg, Marc M; Prosperi, Davide D; Kingma, Paul S PS

Publication Date: 2021-07-28

Variant appearance in text: TLR-4: L18F

PubMed Link: 34439781

Variant Present in the following documents:

• Main text
• biomolecules-11-01114.pdf

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Identification of Highly Conserved SARS-CoV-2 Antigenic Epitopes with Wide Coverage Using Reverse Vaccinology Approach.

Viruses

Hisham, Yasmin Y; Ashhab, Yaqoub Y; Hwang, Sang-Hyun SH; Kim, Dong-Eun DE

Publication Date: 2021-04-28

Variant appearance in text: TLR4: L18F

PubMed Link: 33925069

Variant Present in the following documents:

• Main text

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Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.

Cell Death & Disease

Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D

Publication Date: 2019-02-27

Variant appearance in text: TLR4: 52C>T; Leu18Phe

PubMed Link: 30814510

Variant Present in the following documents:

• 41419_2019_1453_MOESM27_ESM.xlsx, sheet 1

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