PMID: 20017967

Genome-wide association analyses of North American Rheumatoid Arthritis Consortium and Framingham Heart Study data utilizing genome-wide linkage results.

BMC proceedings
YJ Yoo, D Pinnaduwage, D Waggott, SB Bull, L Sun
2009-12-15

26 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
4-22509558-T-A ADGRA3 c.257+7593A>T - IntronicSNV - 1/18
2-172409721-C-T CYBRD1 c.403-135C>T - IntronicSNV - 2/3
11-82581587-C-G PRCP c.169-10428G>C - IntronicSNV - 1/8
20-58393002-G-T PHACTR3 c.1328+11753G>T - IntronicSNV - 8/12
10-50097819-G-A WDFY4 c.7168-805G>A - IntronicSNV - 43/61
7-147192154-G-C CNTNAP2 c.1777+9021G>C - IntronicSNV - 11/23
7-147192154-G-T CNTNAP2 c.1777+9021G>T - IntronicSNV - 11/23
11-120644447-A-C GRIK4 c.83-28955A>C - IntronicSNV - 3/20
2-191860502-C-A STAT1 c.786-557G>T - IntronicSNV - 9/24
1-17681277-T-C PADI4 c.1310+95T>C - IntronicSNV - 11/15
7-72982874-C-T TBL2 c.*1963G>A - IntergenicSNV 7/7 -
17-80715054-T-C TBCD c.235+963T>C - IntronicSNV - 2/38
1-62922660-G-A DOCK7 c.6287+549C>T - IntronicSNV - 48/48
9-2130917-G-C SMARCA2 c.3981+6980G>C - IntronicSNV - 27/33
9-2130917-G-A SMARCA2 c.3981+6980G>A - IntronicSNV - 27/33
2-191973563-A-G STAT4 c.274-32512T>C - IntronicSNV - 3/23
20-20217327-T-G CFAP61 c.2060+8307T>G - IntronicSNV - 18/26
11-116652423-G-C ZPR1 c.1179+451C>G - IntronicSNV - 12/13
11-116652423-G-A ZPR1 c.1179+451C>T - IntronicSNV - 12/13
11-116652423-G-T ZPR1 c.1179+451C>A - IntronicSNV - 12/13
2-202560854-T-C MPP4 c.1-2177A>G - IntronicSNV - 1/21
1-230300586-C-G GALNT2 c.127-13378C>G - IntronicSNV - 1/15
1-230300586-C-T GALNT2 c.127-13378C>T - IntronicSNV - 1/15
11-82581587-C-A PRCP c.169-10428G>T - IntronicSNV - 1/8
9-123740484-C-T C5 c.3659-1301G>A - IntronicSNV - 28/40
7-72857049-A-G BAZ1B c.4094+6T>C - IntronicSNV - 18/19