PMID: 23675527

The association of common SNPs and haplotypes in CETP gene with HDL cholesterol levels in Latvian population.

PloS one
I Radovica, D Fridmanis, I Vaivade, L Nikitina-Zake, J Klovins
2013

26 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
16-56996211-G-A CETP c.118+202G>A - IntronicSNV - 1/15
12-123187305-A-G HCAR2 c.526T>C p.Leu176Leu Synonymous 1/1 -
12-123187305-A-T HCAR2 c.526T>A p.Leu176Met Missense 1/1 -
12-123186900-G-C HCAR2 c.931C>G p.Arg311Gly Missense 1/1 -
16-56998572-G-C CETP c.233+1536G>C - IntronicSNV - 2/15
5-74413713-T-C ANKRD31 c.3868+247A>G - IntronicSNV - 17/24
16-56997233-G-A CETP c.233+197G>A - IntronicSNV - 2/15
16-57002732-T-G CETP c.234-566T>G - IntronicSNV - 2/15
11-116652423-G-A ZPR1 c.1179+451C>T - IntronicSNV - 12/13
16-57015091-G-C CETP c.1168G>C p.Ala390Pro Missense 12/16 -
16-56996211-G-C CETP c.118+202G>C - IntronicSNV - 1/15
16-57004889-G-A CETP c.528-56G>A - IntronicSNV - 5/15
11-116652423-G-C ZPR1 c.1179+451C>G - IntronicSNV - 12/13
11-116652423-G-T ZPR1 c.1179+451C>A - IntronicSNV - 12/13
12-123186900-G-A HCAR2 c.931C>T p.Arg311Cys Missense 1/1 -
16-57007451-G-A CETP c.930+29G>A - IntronicSNV - 9/15
12-123187239-A-G HCAR2 c.592T>C p.Phe198Leu Missense 1/1 -
16-57006378-A-G CETP c.750+383A>G - IntronicSNV - 8/15
16-56996288-G-A CETP c.118+279G>A - IntronicSNV - 1/15
12-123187305-A-C HCAR2 c.526T>G p.Leu176Val Missense 1/1 -
16-56999258-A-C CETP c.233+2222A>C - IntronicSNV - 2/15
16-57017319-G-A CETP c.1403G>A p.Arg468Gln Missense 15/16 -
7-72989390-A-G TBL2 c.131-547T>C - IntronicSNV - 1/6
5-74651084-A-G HMGCR c.1722+45A>G - IntronicSNV - 13/19
1-55505647-G-A PCSK9 c.137G>A p.Arg46His Missense 1/12 -
8-19820433-T-C LPL c.1427+703T>C - IntronicSNV - 9/9