PMID: 24068893

Generalization and dilution of association results from European GWAS in populations of non-European ancestry: the PAGE study.

PLoS biology
CS Carlson, TC Matise, KE North, CA Haiman, MD Fesinmeyer, S Buyske, FR Schumacher, U Peters, N Franceschini, MD Ritchie, DJ Duggan, KL Spencer, L Dumitrescu, CB Eaton, F Thomas, A Young, C Carty, G Heiss, L Le Marchand, DC Crawford, LA Hindorff, CL Kooperberg,
2013-09

28 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
1-63049593-C-T DOCK7 c.1801-668G>A - IntronicSNV - 15/48
16-53995641-C-A FTO c.1364+27620C>A - IntronicSNV - 8/8
16-53995641-C-T FTO c.1364+27620C>T - IntronicSNV - 8/8
12-109895168-C-G KCTD10 c.527+267G>C - IntronicSNV - 5/6
16-56997233-G-A CETP c.233+197G>A - IntronicSNV - 2/15
11-116662407-G-A APOA5 c.56C>T p.Ser19Leu Missense 3/4 -
1-63049593-C-G DOCK7 c.1801-668G>C - IntronicSNV - 15/48
11-116619073-C-T BUD13 c.*125G>A - 3-UTRSNV 10/10 -
11-116619073-C-G BUD13 c.*125G>C - 3-UTRSNV 10/10 -
16-28883241-A-G SH2B1 c.1450A>G p.Thr484Ala Missense 5/9 -
16-28883241-A-T SH2B1 c.1450A>T p.Thr484Ser Missense 5/9 -
5-74648603-A-T HMGCR c.1368+1176A>T - IntronicSNV - 11/19
16-56919348-C-A SLC12A3 c.1925+72C>A - IntronicSNV - 15/25
2-21232195-G-A APOB c.7545C>T p.Thr2515Thr Synonymous 26/29 -
9-107647220-C-T ABCA1 c.161-371G>A - IntronicSNV - 3/49
9-107647655-G-A ABCA1 c.161-806C>T - IntronicSNV - 3/49
9-107647655-G-T ABCA1 c.161-806C>A - IntronicSNV - 3/49
19-11210912-C-G LDLR c.81C>G p.Cys27Trp Missense 2/18 -
19-11210912-C-A LDLR c.81C>A p.Cys27* Nonsense 2/18 -
15-58727325-A-G LIPC c.88+3006A>G - IntronicSNV - 1/8
16-56919348-C-G SLC12A3 c.1925+72C>G - IntronicSNV - 15/25
11-2858546-C-T KCNQ1 c.1795-10451C>T - IntronicSNV - 15/15
9-15289578-C-T TTC39B c.240+17504G>A - IntronicSNV - 1/19
20-44576502-T-C PCIF1 c.*108T>C - 3-UTRSNV 17/17 -
11-24892924-T-C LUZP2 c.397-34613T>C - IntronicSNV - 5/11
19-11210912-C-T LDLR c.81C>T p.Cys27Cys Synonymous 2/18 -
4-6292915-A-G WFS1 c.461-9A>G - IntronicSNV - 4/7
1-230294916-C-T GALNT2 c.127-19048C>T - IntronicSNV - 1/15