PMID: 30275900

Epigenome wide association study of SNP-CpG interactions on changes in triglyceride levels after pharmaceutical intervention: a GAW20 analysis.

BMC proceedings
J Veenstra, A Kalsbeek, K Koster, N Ryder, A Bos, J Huisman, L VanderBerg, J VanderWoude, NL Tintle
2018

40 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
12-72368571-T-G TPH2 c.805+2076T>G - IntronicSNV - 6/10
16-88039150-T-C BANP c.363-546T>C - IntronicSNV - 4/11
1-118583408-G-A SPAG17 c.3111C>T p.Tyr1037Tyr Synonymous 22/49 -
1-230337887-G-A GALNT2 c.221-996G>A - IntronicSNV - 2/15
1-232157516-T-C DISC1 c.2308-4665T>C - IntronicSNV - 11/12
6-71383021-G-A SMAP1 c.118+5177G>A - IntronicSNV - 1/10
21-31039378-T-A GRIK1 c.726+5925A>T - IntronicSNV - 4/16
21-31039378-T-C GRIK1 c.726+5925A>G - IntronicSNV - 4/16
1-63261652-A-G ATG4C c.1-7806A>G - IntronicSNV - 1/10
3-65641268-G-C MAGI1 c.314-33505C>G - IntronicSNV - 1/22
11-116632500-C-T BUD13 c.1036+769G>A - IntronicSNV - 4/9
13-95053560-A-C GPC6 c.1466-1709A>C - IntronicSNV - 8/8
14-33126484-T-C AKAP6 c.2731-21033T>C - IntronicSNV - 7/13
16-56973461-G-A HERPUD1 c.551+190G>A - IntronicSNV - 5/7
15-76359055-C-T TMEM266 c.-97+6698C>T - intron_variant - 1/10
11-116652301-C-T ZPR1 c.1179+573G>A - IntronicSNV - 12/13
20-44511627-C-T ZSWIM1 c.396C>T p.Phe132Phe Synonymous 2/2 -
3-118935999-A-C B4GALT4 c.798-808T>G - IntronicSNV - 6/7
2-228864662-C-T SPHKAP c.4449-4252G>A - IntronicSNV - 7/10
7-73028759-C-T MLXIPL c.400+1642G>A - IntronicSNV - 2/16
1-230327568-C-G GALNT2 c.221-11315C>G - IntronicSNV - 2/15
1-243355772-T-C CEP170 c.632-976A>G - IntronicSNV - 7/19
11-117201997-C-T CEP164 c.-98+3377C>T - intron_variant - 1/32
14-64343703-C-T SYNE2 c.-52+23842C>T - intron_variant - 1/115
7-73445789-A-G ELN c.82+3190A>G - IntronicSNV - 1/32
1-245556857-G-A KIF26B c.1000-26024G>A - IntronicSNV - 3/14
1-230327568-C-T GALNT2 c.221-11315C>T - IntronicSNV - 2/15
11-61549458-A-G MYRF c.2911+162A>G - IntronicSNV - 21/25
2-21232195-G-A APOB c.7545C>T p.Thr2515Thr Synonymous 26/29 -
3-118935999-A-G B4GALT4 c.798-808T>C - IntronicSNV - 6/7
10-25234239-C-T PRTFDC1 c.49-2874G>A - IntronicSNV - 1/8
14-39714987-T-A MIA2 c.337-1128T>A - IntronicSNV - 3/5
14-39714987-T-C MIA2 c.337-1128T>C - IntronicSNV - 3/5
7-74133929-T-C GTF2I c.943+669T>C - IntronicSNV - 12/34
8-126376699-C-T NSMCE2 c.627-2311C>T - IntronicSNV - 7/7
6-127636823-T-C ECHDC1 c.416+772A>G - IntronicSNV - 4/5
22-37202831-G-C PVALB c.305-5869C>G - IntronicSNV - 4/4
22-37202831-G-A PVALB c.305-5869C>T - IntronicSNV - 4/4
3-62052909-T-C PTPRG c.520-10928T>C - IntronicSNV - 4/29
2-27876666-T-G SUPT7L c.983-52A>C - IntronicSNV - 5/5