| Variant ID | Gene | cDNA | Protein | Consequence | Exon | Intron |
|---|---|---|---|---|---|---|
| 9-107665929-A-G | ABCA1 | c.32T>C | p.Leu11Pro | Missense | 2/50 | - |
| 4-68447106-G-C | STAP1 | c.447G>C | p.Arg149Ser | Missense | 5/9 | - |
| 16-67976606-C-T | LCAT | c.491G>A | p.Arg164His | Missense | 4/6 | - |
| 9-107586851-C-T | ABCA1 | c.2551G>A | p.Gly851Arg | Missense | 18/50 | - |
| 16-67974180-A-C | LCAT | c.950T>G | p.Met317Arg | Missense | 6/6 | - |
| 16-67977846-C-T | LCAT | c.154+5G>A | - | IntronicSNV | - | 1/5 |
| 9-107582213-A-G | ABCA1 | c.3098T>C | p.Leu1033Pro | Missense | 21/50 | - |
| 9-107555483-G-GC | ABCA1 | c.5604_5605insG | p.Leu1869Alafs*22 | Frameshift | 41/50 | - |
| 9-107573080-C-A | ABCA1 | c.4175+1G>T | - | IntronicSNV | - | 29/49 |
| 9-107607760-C-A | ABCA1 | c.811G>T | p.Glu271* | Nonsense | 8/50 | - |
| 11-116706940-TTCT-T | APOA1 | c.391_393delAAG | p.Lys131delLys | InFrameDeletion | 4/4 | - |
| 9-107666239-G-A | ABCA1 | c.1-279C>T | - | IntronicSNV | 1/50 | - |
| 8-19813529-A-G | LPL | c.953A>G | p.Asn318Ser | Missense | 6/10 | - |
| 16-67976585-C-T | LCAT | c.512G>A | p.Arg171Gln | Missense | 4/6 | - |
| 11-116706919-C-A | APOA1 | c.409G>T | p.Glu137* | Nonsense | 4/4 | - |
| 9-107593328-C-G | ABCA1 | c.1770G>C | p.Trp590Cys | Missense | 14/50 | - |
| 9-107624031-G-A | ABCA1 | c.472C>T | p.Leu158Leu | Synonymous | 6/50 | - |
| 16-67976969-C-T | LCAT | c.301G>A | p.Asp101Asn | Missense | 2/6 | - |
| 9-107620867-C-T | ABCA1 | c.656G>A | p.Arg219Lys | Missense | 7/50 | - |
| 9-107566974-G-A | ABCA1 | c.4492C>T | p.Gln1498* | Nonsense | 32/50 | - |
| 9-107602698-G-A | ABCA1 | c.916C>T | p.Arg306Cys | Missense | 9/50 | - |
| 11-116707739-A-C | APOA1 | c.178T>G | p.Ser60Ala | Missense | 3/4 | - |
| 9-107624029-C-A | ABCA1 | c.474G>T | p.Leu158Leu | Synonymous | 6/50 | - |
| 9-107593324-C-A | ABCA1 | c.1774G>T | p.Gly592Cys | Missense | 14/50 | - |
| 9-107588033-C-T | ABCA1 | c.2473G>A | p.Val825Ile | Missense | 17/50 | - |
| 19-11216264-G-T | LDLR | c.682G>T | p.Glu228* | Nonsense | 4/18 | - |
| 19-11213441-G-A | LDLR | c.292G>A | p.Gly98Ser | Missense | 3/18 | - |
| 9-107589255-C-T | ABCA1 | c.2311G>A | p.Val771Met | Missense | 16/50 | - |
| 4-68447106-G-T | STAP1 | c.447G>T | p.Arg149Ser | Missense | 5/9 | - |
| 9-107589255-C-G | ABCA1 | c.2311G>C | p.Val771Leu | Missense | 16/50 | - |
| 9-107556776-T-G | ABCA1 | c.5398A>C | p.Asn1800His | Missense | 40/50 | - |
| 19-11201366-G-A | LDLR | c.67+1075G>A | - | IntronicSNV | - | 1/17 |
| 9-107586835-CC-C | ABCA1 | c.2568delG | p.Trp856Cysfs*40 | Frameshift | 18/50 | - |
| 16-57016092-G-A | CETP | c.1264G>A | p.Val422Ile | Missense | 14/16 | - |
| 16-67977909-G-GG | LCAT | c.101_101dupC | p.His35Alafs*7 | Frameshift | 1/6 | - |
| 11-116660917-C-G | APOA5 | c.1028G>C | p.Arg343Pro | Missense | 4/4 | - |
| 12-125265689-C-T | SCARB1 | c.*1540G>A | - | IntronicSNV | 13/13 | - |
| 11-116639104-A-G | BUD13 | c.237+1741T>C | - | IntronicSNV | - | 2/9 |
| 16-57016092-G-C | CETP | c.1264G>C | p.Val422Leu | Missense | 14/16 | - |
| 9-107594933-ACT-TGA | ABCA1 | c.1429_1431delAGTinsTGA | p.Ser477* | Nonsense | 12/50 | - |
| 9-107594109-C-A | ABCA1 | c.1510-1G>T | - | IntronicSNV | - | 12/49 |
| 9-107588172-GTG-G | ABCA1 | c.2338-3_2338-2delCA | - | IntronicDeletion | - | 16/49 |
| 11-116706610-G-A | APOA1 | c.718C>T | p.Gln240* | Nonsense | 4/4 | - |
| 9-107594917-T-G | ABCA1 | c.1447A>C | p.Thr483Pro | Missense | 12/50 | - |
| 9-107581915-G-A | ABCA1 | c.3193C>T | p.Pro1065Ser | Missense | 22/50 | - |
| 9-107555512-TT-T | ABCA1 | c.5577delA | p.Val1861Trpfs*9 | Frameshift | 41/50 | - |
| 8-19805736-C-A | LPL | c.134C>A | p.Thr45Asn | Missense | 2/10 | - |
| 10-16905500-C-T | CUBN | c.9454+6135G>A | - | IntronicSNV | - | 59/66 |
| 2-21231628-C-T | APOB | c.8112G>A | p.Ala2704Ala | Synonymous | 26/29 | - |
| 2-21232128-G-A | APOB | c.7612C>T | p.Leu2538Leu | Synonymous | 26/29 | - |
| 16-67974219-C-T | LCAT | c.911G>A | p.Arg304His | Missense | 6/6 | - |
| 9-107567002-C-G | ABCA1 | c.4465-1G>C | - | IntronicSNV | - | 31/49 |
| 9-107593236-T-C | ABCA1 | c.1862A>G | p.Gln621Arg | Missense | 14/50 | - |
| 16-67977904-G-A | LCAT | c.101C>T | p.Pro34Leu | Missense | 1/6 | - |
| 15-58801943-A-T | LIPC | c.89-28589A>T | - | IntronicSNV | - | 1/8 |
| 9-107664301-C-T | ABCA1 | c.66+1594G>A | - | IntronicSNV | - | 2/49 |
| 16-67976794-AC-A | LCAT | c.397delG | p.Val133Trpfs*131 | Frameshift | 3/6 | - |
| 16-81534790-T-A | CMIP | c.18+5691T>A | - | IntronicSNV | - | 1/20 |
| 9-107574868-C-T | ABCA1 | c.4037G>A | p.Gly1346Glu | Missense | 28/50 | - |
| 16-81534790-T-C | CMIP | c.18+5691T>C | - | IntronicSNV | - | 1/20 |
| 9-107624029-C-T | ABCA1 | c.474G>A | p.Leu158Leu | Synonymous | 6/50 | - |
| 9-107593339-G-A | ABCA1 | c.1759C>T | p.Arg587Trp | Missense | 14/50 | - |
| 16-67976809-C-T | LCAT | c.382G>A | p.Gly128Ser | Missense | 3/6 | - |
| 9-107624029-C-G | ABCA1 | c.474G>C | p.Leu158Leu | Synonymous | 6/50 | - |
| 19-11224107-CC-AA | LDLR | c.1340_1341delCCinsAA | p.Ser447* | Nonsense | 9/18 | - |
| 9-107568556-C-A | ABCA1 | c.4430G>T | p.Cys1477Phe | Missense | 31/50 | - |
| 8-19810881-G-T | LPL | c.490G>T | p.Ala164Ser | Missense | 4/10 | - |
| 9-107566948-C-T | ABCA1 | c.4518G>A | p.Ser1506Ser | Synonymous | 32/50 | - |
| 2-44078950-C-T | ABCG8 | c.550C>T | p.Arg184Cys | Missense | 4/13 | - |
| 9-107578515-C-A | ABCA1 | c.3647G>T | p.Gly1216Val | Missense | 25/50 | - |
| 16-67976622-G-A | LCAT | c.475C>T | p.Arg159Trp | Missense | 4/6 | - |
| 9-107547892-G-A | ABCA1 | c.6430C>T | p.Arg2144* | Nonsense | 49/50 | - |
| 17-56356714-A-T | MPO | c.622T>A | p.Ser208Thr | Missense | 5/12 | - |
| 9-107589238-C-G | ABCA1 | c.2328G>C | p.Lys776Asn | Missense | 16/50 | - |
| 9-107550201-C-G | ABCA1 | c.6204G>C | p.Leu2068Leu | Synonymous | 46/50 | - |
| 9-107647655-G-A | ABCA1 | c.161-806C>T | - | IntronicSNV | - | 3/49 |
| 10-16905500-C-G | CUBN | c.9454+6135G>C | - | IntronicSNV | - | 59/66 |
| 4-68472059-A-G | STAP1 | c.872A>G | p.Asn291Ser | Missense | 9/9 | - |
| 16-67973991-C-T | LCAT | c.1139G>A | p.Cys380Tyr | Missense | 6/6 | - |
| 16-67974018-G-A | LCAT | c.1112C>T | p.Thr371Met | Missense | 6/6 | - |
| 11-116706811-G-T | APOA1 | c.517C>A | p.Arg173Ser | Missense | 4/4 | - |
| 15-58801943-A-G | LIPC | c.89-28589A>G | - | IntronicSNV | - | 1/8 |
| 9-107558340-G-A | ABCA1 | c.5376C>T | p.Thr1792Thr | Synonymous | 39/50 | - |
| 9-107593329-C-A | ABCA1 | c.1769G>T | p.Trp590Leu | Missense | 14/50 | - |
| 9-107620797-A-G | ABCA1 | c.720+6T>C | - | IntronicSNV | - | 7/49 |
| 16-67976320-A-T | LCAT | c.694T>A | p.Ser232Thr | Missense | 5/6 | - |
| 9-107586753-T-C | ABCA1 | c.2649A>G | p.Ile883Met | Missense | 18/50 | - |
| 2-21239364-G-C | APOB | c.3279C>G | p.Thr1093Thr | Synonymous | 21/29 | - |
| 19-11230899-C-T | LDLR | c.1977C>T | p.Thr659Thr | Synonymous | 13/18 | - |
| 9-107624242-A-G | ABCA1 | c.422-161T>C | - | IntronicSNV | - | 5/49 |
| 19-8433196-C-A | ANGPTL4 | c.548-907C>A | - | IntronicSNV | - | 3/6 |
| 19-11230899-C-G | LDLR | c.1977C>G | p.Thr659Thr | Synonymous | 13/18 | - |
| 19-11230899-C-A | LDLR | c.1977C>A | p.Thr659Thr | Synonymous | 13/18 | - |
| 9-107579632-C-G | ABCA1 | c.3516G>C | p.Glu1172Asp | Missense | 24/50 | - |
| 9-107620835-G-A | ABCA1 | c.688C>T | p.Arg230Cys | Missense | 7/50 | - |
| 9-107666239-G-C | ABCA1 | c.1-279C>G | - | IntronicSNV | 1/50 | - |
| 15-58855748-C-T | LIPC | c.1214C>T | p.Thr405Met | Missense | 8/9 | - |
| 8-133899404-G-C | TG | c.1787G>C | p.Gly596Ala | Missense | 9/48 | - |
| 9-107571786-G-C | ABCA1 | c.4235C>G | p.Pro1412Arg | Missense | 30/50 | - |
| 16-67977895-G-A | LCAT | c.110C>T | p.Thr37Met | Missense | 1/6 | - |
| 11-116652423-G-C | ZPR1 | c.1179+451C>G | - | IntronicSNV | - | 12/13 |
| 9-107549244-G-A | ABCA1 | c.6218C>T | p.Thr2073Ile | Missense | 47/50 | - |
| 9-107593919-T-A | ABCA1 | c.1699A>T | p.Asn567Tyr | Missense | 13/50 | - |
| 9-107556697-T-A | ABCA1 | c.5477A>T | p.Gln1826Leu | Missense | 40/50 | - |
| 11-116707001-C-T | APOA1 | c.327G>A | p.Glu109Glu | Synonymous | 4/4 | - |
| 11-116652423-G-A | ZPR1 | c.1179+451C>T | - | IntronicSNV | - | 12/13 |
| 11-116652423-G-T | ZPR1 | c.1179+451C>A | - | IntronicSNV | - | 12/13 |
| 16-67974007-G-A | LCAT | c.1123C>T | p.Arg375Cys | Missense | 6/6 | - |
| 19-11210979-G-T | LDLR | c.148G>T | p.Ala50Ser | Missense | 2/18 | - |
| 11-116639104-A-T | BUD13 | c.237+1741T>A | - | IntronicSNV | - | 2/9 |
| 2-44071736-C-G | ABCG8 | c.154C>G | p.Leu52Val | Missense | 2/13 | - |
| 12-110000193-C-T | MMAB | c.349-536G>A | - | IntronicSNV | - | 4/8 |
| 9-107645381-G-A | ABCA1 | c.360C>T | p.Thr120Thr | Synonymous | 5/50 | - |
| 12-110000193-C-G | MMAB | c.349-536G>C | - | IntronicSNV | - | 4/8 |
| 2-21245889-G-A | APOB | c.2630C>T | p.Pro877Leu | Missense | 18/29 | - |
| 16-67977101-C-G | LCAT | c.169G>C | p.Gly57Arg | Missense | 2/6 | - |
| 9-107646756-G-A | ABCA1 | c.254C>T | p.Pro85Leu | Missense | 4/50 | - |
| 9-107647655-G-T | ABCA1 | c.161-806C>A | - | IntronicSNV | - | 3/49 |
| 9-107594089-A-C | ABCA1 | c.1529T>G | p.Leu510Arg | Missense | 13/50 | - |