PMID: 31719535

Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.

Nature communications
R Noordam, MM Bos, H Wang, TW Winkler, AR Bentley, TO Kilpeläinen, PS de Vries, YJ Sung, K Schwander, BE Cade, A Manning, H Aschard, MR Brown, H Chen, N Franceschini, SK Musani, M Richard, D Vojinovic, S Aslibekyan, TM Bartz, L de Las Fuentes, M Feitosa, AR Horimoto, M Ilkov, M Kho, A Kraja, C Li, E Lim, Y Liu, DO Mook-Kanamori, T Rankinen, SM Tajuddin, A van der Spek, Z Wang, J Marten, V Laville, M Alver, E Evangelou, ME Graff, M He, B Kühnel, LP Lyytikäinen, P Marques-Vidal, IM Nolte, ND Palmer, R Rauramaa, XO Shu, H Snieder, S Weiss, W Wen, LR Yanek, C Adolfo, C Ballantyne, L Bielak, NR Biermasz, E Boerwinkle, N Dimou, G Eiriksdottir, C Gao, SA Gharib, DJ Gottlieb, J Haba-Rubio, TB Harris, S Heikkinen, R Heinzer, JE Hixson, G Homuth, MA Ikram, P Komulainen, JE Krieger, J Lee, J Liu, KK Lohman, AI Luik, R Mägi, LW Martin, T Meitinger, A Metspalu, Y Milaneschi, MA Nalls, J O'Connell, A Peters, P Peyser, OT Raitakari, AP Reiner, PCN Rensen, TK Rice, SS Rich, T Roenneberg, JI Rotter, PJ Schreiner, J Shikany, SS Sidney, M Sims, CM Sitlani, T Sofer, K Strauch, MA Swertz, KD Taylor, AG Uitterlinden, CM van Duijn, H Völzke, M Waldenberger, RB Wallance, KW van Dijk, C Yu, AB Zonderman, DM Becker, P Elliott, T Esko, C Gieger, HJ Grabe, TA Lakka, T Lehtimäki, KE North, BWJH Penninx, P Vollenweider, LE Wagenknecht, T Wu, YB Xiang, W Zheng, DK Arnett, C Bouchard, MK Evans, V Gudnason, S Kardia, TN Kelly, SB Kritchevsky, RJF Loos, AC Pereira, M Province, BM Psaty, C Rotimi, X Zhu, N Amin, LA Cupples, M Fornage, EF Fox, X Guo, WJ Gauderman, K Rice, C Kooperberg, PB Munroe, CT Liu, AC Morrison, DC Rao, D van Heemst, S Redline
2019-11-12

452 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
19-49206417-A-G FUT2 c.204A>G p.Ala68Ala Synonymous 2/2 -
7-73017005-A-G MLXIPL c.902-2980T>C - IntronicSNV - 7/16
11-116701122-C-G APOC3 c.1-177C>G - IntronicSNV - 1/3
11-116701122-C-A APOC3 c.1-177C>A - IntronicSNV - 1/3
16-57017319-G-A CETP c.1403G>A p.Arg468Gln Missense 15/16 -
3-136080537-G-C STAG1 c.2787+1671C>G - IntronicSNV - 26/33
5-52193237-A-G ITGA1 c.1091-49A>G - IntronicSNV - 9/28
3-136080537-G-T STAG1 c.2787+1671C>A - IntronicSNV - 26/33
2-70524142-A-G FAM136A c.*279T>C - 3-UTRSNV 3/3 -
1-55518467-A-G PCSK9 c.799+3A>G - IntronicSNV - 5/11
9-86617265-A-T RMI1 c.1364A>T p.Asn455Ile Missense 3/3 -
9-86617265-A-G RMI1 c.1364A>G p.Asn455Ser Missense 3/3 -
20-44585420-A-G ZNF335 c.2442+805T>C - IntronicSNV - 17/27
1-63133468-T-A DOCK7 c.39-4667A>T - IntronicSNV - 1/48
6-127493141-G-A RSPO3 c.634+16558G>A - IntronicSNV - 4/4
20-7961715-G-T TMX4 c.*1183C>A - 3-UTRSNV 8/8 -
2-44066247-G-C ABCG8 c.55G>C p.Asp19His Missense 1/13 -
9-2640759-A-G VLDLR c.326-618A>G - IntronicSNV - 3/18
1-63133930-G-A DOCK7 c.39-5129C>T - IntronicSNV - 1/48
7-12269417-C-A TMEM106B c.554C>A p.Thr185Asn Missense 6/9 -
19-52324216-G-C FPR3 c.1-2786G>C - IntronicSNV - 1/1
19-52324216-G-A FPR3 c.1-2786G>A - IntronicSNV - 1/1
7-87076587-C-A ABCB4 c.834-66G>T - IntronicSNV - 8/27
11-116883777-G-A SIK3 c.274-55997C>T - intron_variant - 1/23
11-116883777-G-T SIK3 c.274-55997C>A - intron_variant - 1/23
22-37462936-A-T TMPRSS6 c.2207T>A p.Val736Asp Missense 17/18 -
9-107662304-G-A ABCA1 c.66+3591C>T - IntronicSNV - 2/49
4-3473139-A-G DOK7 c.101-1994A>G - IntronicSNV - 2/6
11-61597972-A-G FADS2 c.207+1903A>G - IntronicSNV - 1/11
15-93604505-C-A RGMA c.131-8768G>T - IntronicSNV - 2/3
2-136403749-C-T R3HDM1 c.1623+652C>T - IntronicSNV - 16/25
16-56908884-G-A SLC12A3 c.1095+2186G>A - IntronicSNV - 8/25
3-132209203-A-G DNAJC13 c.3469-538A>G - IntronicSNV - 31/55
16-56856572-A-G NUP93 c.655-1047A>G - IntronicSNV - 7/21
1-55520408-G-C PCSK9 c.800-1258G>C - IntronicSNV - 5/11
2-44072576-G-T ABCG8 c.166-718G>T - IntronicSNV - 2/12
1-220985811-T-C MARC1 c.888-823T>C - IntronicSNV - 6/6
6-127452639-C-G RSPO3 c.97+12205C>G - IntronicSNV - 1/4
19-17299146-G-A MYO9B c.2688+292G>A - IntronicSNV - 19/39
17-66882466-T-G ABCA8 c.3309+692A>C - IntronicSNV - 24/37
11-116639104-A-G BUD13 c.237+1741T>C - IntronicSNV - 2/9
16-85707367-G-C GSE1 c.*1222G>C - 3-UTRSNV 16/16 -
11-116639104-A-T BUD13 c.237+1741T>A - IntronicSNV - 2/9
17-486821-C-A VPS53 c.1226+2689G>T - IntronicSNV - 12/17
7-107140239-A-G COG5 c.631+27443T>C - IntronicSNV - 6/20
22-46627603-C-T PPARA c.712-86C>T - IntronicSNV - 6/7
17-486821-C-T VPS53 c.1226+2689G>A - IntronicSNV - 12/17
8-116663898-G-A TRPS1 c.-122+16874C>T - intron_variant - 1/6
12-124491529-G-C ZNF664 c.-660-4399G>C - intron_variant - 3/4
16-53809247-G-A FTO c.46-34805G>A - IntronicSNV - 1/8
5-74656539-T-G HMGCR c.*372T>G - 3-UTRSNV 20/20 -
16-78007470-A-T VAT1L c.1161+1640A>T - IntronicSNV - 8/8
2-21231524-G-A APOB c.8216C>T p.Pro2739Leu Missense 26/29 -
19-10813364-T-C QTRT1 c.451+434T>C - IntronicSNV - 3/9
12-126018205-G-C TMEM132B c.1278+14034G>C - IntronicSNV - 4/8
16-78007470-A-C VAT1L c.1161+1640A>C - IntronicSNV - 8/8
1-230304051-C-T GALNT2 c.127-9913C>T - IntronicSNV - 1/15
12-121416650-A-T HNF1A c.79A>T p.Ile27Phe Missense 1/10 -
12-123830939-C-T SBNO1 c.238-825G>A - IntronicSNV - 3/31
7-138455108-A-G ATP6V0A4 c.117+768T>C - IntronicSNV - 3/21
8-145043543-A-G PLEC c.193+5802T>C - IntronicSNV - 2/32
4-3186244-A-G HTT c.4866+2047A>G - IntronicSNV - 37/66
2-21231524-G-T APOB c.8216C>A p.Pro2739Gln Missense 26/29 -
3-170739663-G-A SLC2A2 c.16-3251C>T - IntronicSNV - 1/10
11-126243952-G-A ST3GAL4 c.-61+17755G>A - intron_variant - 1/10
12-126018205-G-A TMEM132B c.1278+14034G>A - IntronicSNV - 4/8
1-109817192-A-G CELSR2 c.*521A>G - 3-UTRSNV 34/34 -
2-44066247-G-A ABCG8 c.55G>A p.Asp19Asn Missense 1/13 -
1-230294715-C-T GALNT2 c.127-19249C>T - IntronicSNV - 1/15
4-87982876-C-T AFF1 c.1038+14130C>T - IntronicSNV - 3/19
4-87982876-C-A AFF1 c.1038+14130C>A - IntronicSNV - 3/19
12-101873956-C-T SPIC c.210+484C>T - IntronicSNV - 4/5
2-44074000-G-A ABCG8 c.322+550G>A - IntronicSNV - 3/12
16-72057282-A-G DHODH c.973+65A>G - IntronicSNV - 7/8
7-72881807-C-T BAZ1B c.2867-1076G>A - IntronicSNV - 9/19
19-10970558-A-C C19orf38 c.462-33A>C - IntronicSNV - 4/6
13-32953388-T-C BRCA2 c.8755-66T>C - IntronicSNV - 21/26
11-61552680-G-T MYRF c.3181-592G>T - IntronicSNV - 24/25
12-121423285-T-G HNF1A c.327-3351T>G - IntronicSNV - 1/9
6-137076010-C-T MAP3K5 c.449-34283G>A - IntronicSNV - 1/29
16-72144174-T-G DHX38 c.3478-681T>G - IntronicSNV - 25/26
19-49218060-C-T MAMSTR c.219+3G>A - IntronicSNV - 4/7
12-123796238-C-T SBNO1 c.3218-562G>A - IntronicSNV - 24/31
3-112936246-C-T BOC c.-82+1125C>T - intron_variant - 2/19
19-8461663-G-A RAB11B c.41-3084G>A - IntronicSNV - 1/4
17-37813856-G-C STARD3 c.298-172G>C - IntronicSNV - 3/14
15-58731153-G-T LIPC c.88+6834G>T - IntronicSNV - 1/8
15-58731153-G-A LIPC c.88+6834G>A - IntronicSNV - 1/8
15-58731153-G-C LIPC c.88+6834G>C - IntronicSNV - 1/8
19-35556744-T-C HPN c.1051-28T>C - IntronicSNV - 12/13
9-136141870-C-T ABO c.29-4299G>A - IntronicSNV - 1/7
1-55631650-G-A USP24 c.862-27C>T - IntronicSNV - 6/67
1-156700651-T-G RRNAD1 c.112-1132T>G - IntronicSNV - 1/7
4-87982876-C-G AFF1 c.1038+14130C>G - IntronicSNV - 3/19
1-55631650-G-T USP24 c.862-27C>A - IntronicSNV - 6/67
12-112007756-C-T ATXN2 c.252-14033G>A - intron_variant - 1/24
16-57007446-T-A CETP c.930+24T>A - IntronicSNV - 9/15
16-57007446-T-G CETP c.930+24T>G - IntronicSNV - 9/15
2-21239866-T-A APOB c.3122-345A>T - IntronicSNV - 20/28
15-58726744-G-C LIPC c.88+2425G>C - IntronicSNV - 1/8
7-17911038-C-T SNX13 c.753+2113G>A - IntronicSNV - 8/25
7-78001018-T-C MAGI2 c.1046-2488A>G - IntronicSNV - 6/21
11-47298360-G-A MADD c.1041G>A p.Glu347Glu Synonymous 5/33 -
10-134459388-A-G INPP5A c.134A>G p.Lys45Arg Missense 3/16 -
1-10556447-G-C PEX14 c.84+1069G>C - IntronicSNV - 2/8
19-45574113-T-C CLASRP c.*10T>C - 3-UTRSNV 21/21 -
19-45574113-T-G CLASRP c.*10T>G - 3-UTRSNV 21/21 -
12-125283766-C-T SCARB1 c.1128+904G>A - IntronicSNV - 8/12
6-36645696-A-G CDKN1A c.-20A>G - 5_prime_UTR_variant 2/4 -
1-10556447-G-T PEX14 c.84+1069G>T - IntronicSNV - 2/8
12-46200396-G-T ARID2 c.285-4805G>T - IntronicSNV - 3/20
21-33059831-T-C SCAF4 c.2043+789A>G - IntronicSNV - 16/19
4-89741269-G-C FAM13A c.29+2858C>G - IntronicSNV - 1/17
6-160980330-T-C LPA c.4632-1727A>G - IntronicSNV - 28/38
2-135762344-C-T MAP3K19 c.235+661G>A - IntronicSNV - 3/9
7-72982874-C-T TBL2 c.*1963G>A - IntergenicSNV 7/7 -
19-45296806-C-T CBLC c.1213C>T p.His405Tyr Missense 8/11 -
10-113933886-A-T GPAM c.414-283T>A - IntronicSNV - 6/21
6-35278796-A-C DEF6 c.423+375A>C - IntronicSNV - 3/10
19-45296806-C-G CBLC c.1213C>G p.His405Asp Missense 8/11 -
10-113933886-A-G GPAM c.414-283T>C - IntronicSNV - 6/21
6-35278796-A-T DEF6 c.423+375A>T - IntronicSNV - 3/10
4-89741269-G-A FAM13A c.29+2858C>T - IntronicSNV - 1/17
16-53809247-G-C FTO c.46-34805G>C - IntronicSNV - 1/8
19-10970558-A-G C19orf38 c.462-33A>G - IntronicSNV - 4/6
2-44099582-G-A ABCG8 c.1211+137G>A - IntronicSNV - 8/12
19-45382034-A-G NECTIN2 c.*157A>G - 3-UTRSNV 6/6 -
19-11227602-C-T LDLR c.1773C>T p.Asn591Asn Synonymous 12/18 -
12-51055708-C-T DIP2B c.427+1606C>T - IntronicSNV - 4/37
10-5254847-A-G AKR1C4 c.681-110A>G - IntronicSNV - 6/8
18-47457559-T-C MYO5B c.2004-1591A>G - IntronicSNV - 16/39
11-122534504-T-C UBASH3B c.161+7586T>C - IntronicSNV - 1/13
3-60524340-A-G FHIT c.1-1645T>C - IntronicSNV - 3/9
22-50878927-G-A PPP6R2 c.2294-324G>A - IntronicSNV - 20/22
3-132163200-G-T DNAJC13 c.69-2119G>T - IntronicSNV - 2/55
12-125338529-C-T SCARB1 c.126+9612G>A - IntronicSNV - 1/12
19-54783375-T-A LILRB2 c.483A>T p.Glu161Asp Missense 5/14 -
6-116312893-A-T FRK c.466+12147T>A - IntronicSNV - 2/7
7-138455108-A-C ATP6V0A4 c.117+768T>G - IntronicSNV - 3/21
11-61573684-T-C FADS1 c.976+452A>G - IntronicSNV - 6/11
18-21161134-C-T NPC1 c.57+5117G>A - IntronicSNV - 1/24
11-13355770-C-T ARNTL c.-135+7756C>T - intron_variant - 3/19
2-63149557-G-A EHBP1 c.1291-20296G>A - IntronicSNV - 11/24
20-39878956-C-T ZHX3 c.-151+18674G>A - intron_variant - 2/3
9-107684230-T-G ABCA1 c.-93+5986A>C - intron_variant - 1/49
7-77994294-G-A MAGI2 c.1103+4179C>T - IntronicSNV - 7/21
7-77994294-G-C MAGI2 c.1103+4179C>G - IntronicSNV - 7/21
19-7224431-G-A INSR c.653-39783C>T - IntronicSNV - 2/21
2-44073881-T-C ABCG8 c.322+431T>C - IntronicSNV - 3/12
8-19823192-T-C LPL c.*371T>C - 3-UTRSNV 10/10 -
19-33899065-G-A PEPD c.818+3513C>T - IntronicSNV - 11/14
19-8433196-C-A ANGPTL4 c.548-907C>A - IntronicSNV - 3/6
20-39672618-T-A TOP1 c.58+14523T>A - IntronicSNV - 2/20
19-8431581-G-A ANGPTL4 c.547+378G>A - IntronicSNV - 3/6
19-8431581-G-C ANGPTL4 c.547+378G>C - IntronicSNV - 3/6
3-36979042-A-G TRANK1 c.23+7236T>C - IntronicSNV - 1/22
19-49232226-G-A RASIP1 c.1801C>T p.Arg601Cys Missense 5/12 -
16-72001521-G-C PKD1L3 c.2286+284C>G - IntronicSNV - 14/30
10-46013277-A-C MARCH8 c.102+15281T>G - IntronicSNV - 2/6
19-45398633-G-C TOMM40 c.643+1310G>C - IntronicSNV - 6/9
8-10683929-G-C PINX1 c.302-175C>G - IntronicSNV - 4/6
12-109950144-A-G UBE3B c.1956+1036A>G - IntronicSNV - 18/27
20-39811275-G-C ZHX3 c.*2556C>G - 3-UTRSNV 4/4 -
8-10683929-G-T PINX1 c.302-175C>A - IntronicSNV - 4/6
15-58740588-C-A LIPC c.88+16269C>A - IntronicSNV - 1/8
1-109796757-G-C CELSR2 c.3310+746G>C - IntronicSNV - 1/33
15-58740588-C-T LIPC c.88+16269C>T - IntronicSNV - 1/8
3-172223982-T-C TNFSF10 c.*692A>G - 3-UTRSNV 3/3 -
11-61569306-C-G FADS1 c.*577G>C - 3-UTRSNV 12/12 -
7-116358044-A-T MET c.1201-13678A>T - IntronicSNV - 2/20
19-11202306-G-T LDLR c.67+2015G>T - IntronicSNV - 1/17
7-116358044-A-G MET c.1201-13678A>G - IntronicSNV - 2/20
8-116602855-T-C TRPS1 c.2097-3024A>G - IntronicSNV - 4/6
3-24293001-T-C THRB c.1-22551A>G - IntronicSNV - 2/9
1-55526428-T-G PCSK9 c.1682-620T>G - IntronicSNV - 10/11
1-55526428-T-C PCSK9 c.1682-620T>C - IntronicSNV - 10/11
7-100285974-A-C GIGYF1 c.1-113T>G - 5-UTRSNV 1/24 -
1-110198727-C-G GSTM4 c.1-285C>G - 5-UTRSNV 1/8 -
7-100285974-A-T GIGYF1 c.1-113T>A - 5-UTRSNV 1/24 -
12-57707295-C-T R3HDM2 c.1-3084G>A - IntergenicSNV - 1/23
17-45732605-G-A KPNB1 c.283-1621G>A - IntronicSNV - 3/21
5-74655726-C-T HMGCR c.2458-84C>T - IntronicSNV - 18/19
18-47093864-C-T LIPG c.332C>T p.Thr111Ile Missense 3/10 -
18-47093864-C-A LIPG c.332C>A p.Thr111Lys Missense 3/10 -
2-136403749-C-A R3HDM1 c.1623+652C>A - IntronicSNV - 16/25
1-62921586-T-C DOCK7 c.6288-459A>G - IntronicSNV - 48/48
9-107662305-C-T ABCA1 c.66+3590G>A - IntronicSNV - 2/49
2-27735033-G-A GCKR c.1422+3915G>A - IntronicSNV - 16/18
9-107662305-C-G ABCA1 c.66+3590G>C - IntronicSNV - 2/49
9-107662305-C-A ABCA1 c.66+3590G>T - IntronicSNV - 2/49
17-76388202-A-G PGS1 c.144-355A>G - IntronicSNV - 1/9
2-169830155-G-A ABCB11 c.1434+70C>T - IntronicSNV - 13/27
11-117095283-C-T PCSK7 c.915+134G>A - IntronicSNV - 7/16
11-77976208-C-G GAB2 c.377-14762G>C - IntronicSNV - 2/9
1-63041800-T-C DOCK7 c.2112+1133A>G - IntronicSNV - 18/48
20-39724338-T-C TOP1 c.731-1522T>C - IntronicSNV - 9/20
7-72907459-C-T BAZ1B c.572-208G>A - IntronicSNV - 4/19
1-62953373-G-A DOCK7 c.5401-290C>T - IntronicSNV - 41/48
4-3186244-A-T HTT c.4866+2047A>T - IntronicSNV - 37/66
2-44074431-C-A ABCG8 c.322+981C>A - IntronicSNV - 3/12
19-11242307-G-C LDLR c.*315G>C - 3-UTRSNV 18/18 -
5-72926514-A-G ARHGEF28 c.-12+4367A>G - intron_variant - 1/36
1-63041800-T-G DOCK7 c.2112+1133A>C - IntronicSNV - 18/48
22-38546033-T-A PLA2G6 c.210-4373A>T - IntronicSNV - 2/15
3-152171870-C-G MBNL1 c.962-1461C>G - IntronicSNV - 6/9
22-38546033-T-C PLA2G6 c.210-4373A>G - IntronicSNV - 2/15
8-19680259-G-A INTS10 c.523+228G>A - IntronicSNV - 5/16
10-46013277-A-T MARCH8 c.102+15281T>A - IntronicSNV - 2/6
19-11147615-G-A SMARCA4 c.4170+1807G>A - IntronicSNV - 29/34
3-31797201-C-T OSBPL10 c.538-7589G>A - IntronicSNV - 3/10
11-61557826-T-C TMEM258 c.113+139A>G - IntronicSNV - 2/3
4-146808682-C-T ZNF827 c.1267-1372G>A - IntronicSNV - 3/14
17-81045854-T-C METRNL c.556+2655T>C - IntronicSNV - 2/3
16-56942921-A-T SLC12A3 c.2952-4255A>T - IntronicSNV - 25/25
3-60812147-G-A FHIT c.-110-4442C>T - intron_variant - 3/9
15-38545725-A-G SPRED1 c.32+307A>G - IntronicSNV - 1/6
15-38545725-A-C SPRED1 c.32+307A>C - IntronicSNV - 1/6
1-109823962-T-C PSRC1 c.520-89A>G - IntronicSNV - 4/7
16-12222297-T-C SNX29 c.1467-1190T>C - IntronicSNV - 12/20
16-72097827-C-T HPR c.5+668C>T - IntronicSNV - 1/4
16-81534790-T-A CMIP c.18+5691T>A - IntronicSNV - 1/20
16-72097827-C-A HPR c.5+668C>A - IntronicSNV - 1/4
15-75289722-T-C SCAMP5 c.-49+1708T>C - intron_variant - 1/6
17-45425115-G-T EFCAB13 c.518-59G>T - IntronicSNV - 8/24
17-45425115-G-A EFCAB13 c.518-59G>A - IntronicSNV - 8/24
16-57009932-C-T CETP c.981+869C>T - IntronicSNV - 10/15
20-39811275-G-T ZHX3 c.*2556C>A - 3-UTRSNV 4/4 -
1-230297778-A-T GALNT2 c.127-16186A>T - IntronicSNV - 1/15
19-45396219-C-T TOMM40 c.435+33C>T - IntronicSNV - 4/9
22-18389513-GG-AG MICAL3 c.65_66delCCinsAG p.Ala22Glu Missense 1/20 -
11-65391317-G-A PCNX3 c.2512-83G>A - IntronicSNV - 12/34
9-107563603-T-C ABCA1 c.4698+732A>G - IntronicSNV - 34/49
20-46290250-T-C SULF2 c.2494+267A>G - IntronicSNV - 18/20
20-7961715-G-A TMX4 c.*1183C>T - 3-UTRSNV 8/8 -
6-160985526-G-A LPA c.4632-6923C>T - IntronicSNV - 28/38
16-72144174-T-C DHX38 c.3478-681T>C - IntronicSNV - 25/26
6-127476516-G-A RSPO3 c.567G>A p.Leu189Leu Synonymous 4/5 -
3-32533010-C-T CMTM6 c.315+192G>A - IntronicSNV - 2/3
12-121416650-A-C HNF1A c.79A>C p.Ile27Leu Missense 1/10 -
4-852313-C-T GAK c.3283+1081G>A - IntronicSNV - 24/27
11-47260319-A-G DDB2 c.1235-32A>G - IntronicSNV - 9/9
2-44074431-C-T ABCG8 c.322+981C>T - IntronicSNV - 3/12
16-72108093-G-A HPR c.92-90G>A - IntronicSNV - 2/4
4-88052219-T-C AFF1 c.2944-16T>C - IntronicSNV - 15/19
12-125264293-G-C SCARB1 c.*1-1161C>G - intron_variant - 12/12
8-19802711-T-C LPL c.89-2980T>C - IntronicSNV - 1/9
6-116337503-G-A FRK c.345-12342C>T - IntronicSNV - 1/7
7-87076587-C-T ABCB4 c.834-66G>A - IntronicSNV - 8/27
12-125264293-G-A SCARB1 c.*1-1161C>T - intron_variant - 12/12
12-125345643-G-A SCARB1 c.126+2498C>T - IntronicSNV - 1/12
7-72913168-G-C BAZ1B c.370-140C>G - IntronicSNV - 3/19
22-37462936-A-G TMPRSS6 c.2207T>C p.Val736Ala Missense 17/18 -
3-50129399-C-T RBM5 c.18-77C>T - IntronicSNV - 2/24
2-211540489-C-A CPS1 c.4217C>A p.Ala1406Asp Missense 37/39 -
15-100646979-C-A ADAMTS17 c.2016+2215G>T - IntronicSNV - 14/21
3-52532118-A-T STAB1 c.78+2611A>T - IntronicSNV - 1/68
22-26718894-A-G SEZ6L c.2015+9026A>G - IntronicSNV - 9/16
11-78099014-T-G GAB2 c.75+29678A>C - IntronicSNV - 1/9
16-57006829-T-A CETP c.751-414T>A - IntronicSNV - 8/15
9-136132875-T-C ABO c.294A>G p.Ala98Ala Synonymous 7/8 -
9-136132875-T-G ABO c.294A>C p.Ala98Ala Synonymous 7/8 -
2-165539661-T-C COBLL1 c.*2795A>G - 3-UTRSNV 14/14 -
2-27999967-G-A MRPL33 c.149-2333G>A - IntronicSNV - 3/3
3-47061183-G-A SETD2 c.7431+67C>T - IntronicSNV - 19/20
2-165539661-T-A COBLL1 c.*2795A>T - 3-UTRSNV 14/14 -
2-21263900-G-A APOB c.293C>T p.Thr98Ile Missense 4/29 -
3-155547274-C-T SLC33A1 c.1482+203G>A - IntronicSNV - 5/5
3-47061183-G-C SETD2 c.7431+67C>G - IntronicSNV - 19/20
17-45732605-G-C KPNB1 c.283-1621G>C - IntronicSNV - 3/21
6-160578860-T-C SLC22A1 c.1599-688T>C - IntronicSNV - 10/10
9-136132875-T-A ABO c.294A>T p.Ala98Ala Synonymous 7/8 -
8-19824492-T-C LPL c.*1671T>C - 3-UTRSNV 10/10 -
4-858332-C-T GAK c.3166+578G>A - IntronicSNV - 23/27
8-19824492-T-A LPL c.*1671T>A - 3-UTRSNV 10/10 -
1-220973563-C-T MARC1 c.753+2207C>T - IntronicSNV - 4/6
8-59338856-G-C UBXN2B c.189-4222G>C - IntronicSNV - 2/7
12-125265689-C-T SCARB1 c.*1540G>A - IntronicSNV 13/13 -
1-110032431-T-G ATXN7L2 c.1038-121T>G - IntronicSNV - 7/10
21-40574305-A-G BRWD1 c.4531T>C p.Ser1511Pro Missense 38/41 -
1-55569440-G-A USP24 c.5025+109C>T - IntronicSNV - 42/67
3-170727218-G-A SLC2A2 c.496+529C>T - IntronicSNV - 4/10
2-44092066-C-T ABCG8 c.965-7049C>T - IntronicSNV - 6/12
15-101905533-T-C PCSK6 c.1855+868A>G - intron_variant - 14/22
19-2814181-C-T THOP1 c.*907C>T - IntergenicSNV 13/13 -
5-118729286-C-T TNFAIP8 c.*210C>T - 3-UTRSNV 2/2 -
19-45302951-A-G CBLC c.1363-687A>G - IntronicSNV - 9/10
5-170459675-G-A RANBP17 c.1710+64294G>A - IntronicSNV - 14/27
15-44211273-T-C FRMD5 c.329+384A>G - IntronicSNV - 4/13
2-165551201-T-C COBLL1 c.2815A>G p.Asn939Asp Missense 12/14 -
12-112310580-G-A MAPKAPK5 c.579+1596G>A - IntronicSNV - 7/13
19-10813364-T-A QTRT1 c.451+434T>A - IntronicSNV - 3/9
19-11277232-G-A KANK2 c.*2C>T - 3-UTRSNV 11/11 -
19-11277232-G-T KANK2 c.*2C>A - 3-UTRSNV 11/11 -
11-116648917-G-C ZPR1 c.*724C>G - IntergenicSNV 14/14 -
11-116654435-C-T ZPR1 c.892-100G>A - IntronicSNV - 9/13
16-15501099-T-C MPV17L c.311-582T>C - IntronicSNV - 1/2
1-109818306-G-T CELSR2 c.*1635G>T - 3-UTRSNV 34/34 -
9-107662304-G-T ABCA1 c.66+3591C>A - IntronicSNV - 2/49
17-76403984-G-A PGS1 c.1402+3814G>A - IntronicSNV - 7/9
7-17919258-G-T SNX13 c.441-3845C>A - IntronicSNV - 5/25
7-17919258-G-A SNX13 c.441-3845C>T - IntronicSNV - 5/25
2-109232388-A-C LIMS1 c.-5+27507A>C - intron_variant - 1/9
7-12269417-C-G TMEM106B c.554C>G p.Thr185Ser Missense 6/9 -
9-107662304-G-C ABCA1 c.66+3591C>G - IntronicSNV - 2/49
1-230293530-C-T GALNT2 c.127-20434C>T - IntronicSNV - 1/15
4-154224048-A-G TRIM2 c.1429+6860A>G - IntronicSNV - 6/11
7-6449272-A-G DAGLB c.*196T>C - 3-UTRSNV 15/15 -
16-67680956-T-A CARMIL2 c.612-63T>A - IntronicSNV - 8/37
1-230293530-C-A GALNT2 c.127-20434C>A - IntronicSNV - 1/15
1-230293530-C-G GALNT2 c.127-20434C>G - IntronicSNV - 1/15
2-27731212-T-C GCKR c.1422+94T>C - IntronicSNV - 16/18
12-124460167-G-T ZNF664 c.-757+1600G>T - intron_variant - 2/4
3-52532118-A-G STAB1 c.78+2611A>G - IntronicSNV - 1/68
19-45574113-T-A CLASRP c.*10T>A - 3-UTRSNV 21/21 -
19-3414088-G-A NFIC c.563-11016G>A - IntronicSNV - 2/8
6-160564476-C-G SLC22A1 c.1277-97C>G - IntronicSNV - 7/10
19-11347657-C-T DOCK6 c.2074-102G>A - IntronicSNV - 18/47
8-22457804-C-T C8orf58 c.40+531C>T - IntronicSNV - 1/6
11-116647607-C-T ZPR1 c.*2034G>A - IntergenicSNV 14/14 -
16-57009941-T-C CETP c.981+878T>C - IntronicSNV - 10/15
1-109796757-G-A CELSR2 c.3310+746G>A - IntronicSNV - 1/33
8-118184783-C-T SLC30A8 c.973C>T p.Arg325Trp Missense 8/8 -
8-118184783-C-A SLC30A8 c.973C>A p.Arg325Arg Synonymous 8/8 -
1-109817590-G-T CELSR2 c.*919G>T - 3-UTRSNV 34/34 -
4-103188709-C-A SLC39A8 c.1171G>T p.Ala391Ser Missense 7/8 -
19-45410002-G-A APOE c.43+78G>A - IntronicSNV - 2/3
4-103188709-C-T SLC39A8 c.1171G>A p.Ala391Thr Missense 7/8 -
5-53298025-G-A ARL15 c.462+111007C>T - IntronicSNV - 4/4
9-15305378-G-C TTC39B c.240+1704C>G - IntronicSNV - 1/19
1-93816400-A-G DR1 c.221-3065A>G - IntronicSNV - 1/2
15-44266730-G-A FRMD5 c.103-50223C>T - IntronicSNV - 1/13
3-136103267-C-T STAG1 c.2278-6673G>A - IntronicSNV - 22/33
3-136103267-C-G STAG1 c.2278-6673G>C - IntronicSNV - 22/33
2-66665146-T-C MEIS1 c.239+51T>C - IntronicSNV - 2/12
2-44072576-G-C ABCG8 c.166-718G>C - IntronicSNV - 2/12
1-40028180-A-C PABPC4 c.1669-92T>G - IntronicSNV - 12/15
1-40028180-A-G PABPC4 c.1669-92T>C - IntronicSNV - 12/15
11-77976208-C-T GAB2 c.377-14762G>A - IntronicSNV - 2/9
17-76401318-C-T PGS1 c.1402+1148C>T - IntronicSNV - 7/9
19-11085543-T-C SMARCA4 c.1-9285T>C - IntronicSNV - 1/34
16-81534790-T-C CMIP c.18+5691T>C - IntronicSNV - 1/20
12-110000193-C-G MMAB c.349-536G>C - IntronicSNV - 4/8
15-80705827-A-G ARNT2 c.31+8939A>G - IntronicSNV - 1/18
19-48376941-C-G SULT2A1 c.745+973G>C - IntronicSNV - 5/5
11-46743247-T-C F2 c.316+857T>C - IntronicSNV - 4/13
1-109813510-A-T CELSR2 c.7484-39A>T - IntronicSNV - 24/33
9-107665739-G-A ABCA1 c.66+156C>T - IntronicSNV - 2/49
16-20549777-G-A ACSM2B c.1630-1093C>T - IntronicSNV - 14/14
2-27574426-G-C GTF3C2 c.-25+5180C>G - intron_variant - 1/18
2-27574426-G-A GTF3C2 c.-25+5180C>T - intron_variant - 1/18
1-109813510-A-C CELSR2 c.7484-39A>C - IntronicSNV - 24/33
15-42683787-G-A CAPN3 c.946-1050G>A - IntronicSNV - 6/23
12-125284748-A-G SCARB1 c.1050T>C p.Ala350Ala Synonymous 8/13 -
17-8161149-C-T PFAS c.1100C>T p.Pro367Leu Missense 10/28 -
19-54783375-T-G LILRB2 c.483A>C p.Glu161Asp Missense 5/14 -
10-70346740-T-C TET1 c.1914+12731T>C - IntronicSNV - 2/11
12-125284748-A-T SCARB1 c.1050T>A p.Ala350Ala Synonymous 8/13 -
16-53799977-T-G FTO c.46-44075T>G - IntronicSNV - 1/8
4-88030261-G-T AFF1 c.1512+794G>T - IntronicSNV - 10/19
16-57015091-G-C CETP c.1168G>C p.Ala390Pro Missense 12/16 -
16-53799977-T-C FTO c.46-44075T>C - IntronicSNV - 1/8
2-66680892-G-A MEIS1 c.631-10349G>A - IntronicSNV - 6/12
6-160400147-A-G IGF2R c.149+9720A>G - IntronicSNV - 1/47
19-45373565-G-A NECTIN2 c.479-1545G>A - IntronicSNV - 2/5
8-19824667-C-T LPL c.*1846C>T - 3-UTRSNV 10/10 -
11-116655600-G-A ZPR1 c.791C>T p.Ala264Val Missense 8/14 -
11-116655600-G-C ZPR1 c.791C>G p.Ala264Gly Missense 8/14 -
16-67928042-G-A PSKH1 c.-71+768G>A - intron_variant - 1/2
3-50113034-A-G RBM6 c.3246+271A>G - IntronicSNV - 20/20
19-45487178-C-T CLPTM1 c.587-1298C>T - IntronicSNV - 5/13
8-145022657-G-T PLEC c.194-9797C>A - IntronicSNV - 2/32
16-57000885-G-A CETP c.234-2413G>A - IntronicSNV - 2/15
3-160086055-G-T IFT80 c.440-2115C>A - IntronicSNV - 5/19
1-55520408-G-A PCSK9 c.800-1258G>A - IntronicSNV - 5/11
9-107664301-C-T ABCA1 c.66+1594G>A - IntronicSNV - 2/49
4-858332-C-G GAK c.3166+578G>C - IntronicSNV - 23/27
8-145022657-G-A PLEC c.194-9797C>T - IntronicSNV - 2/32
2-27730940-T-C GCKR c.1337T>C p.Leu446Pro Missense 15/19 -
12-107174646-A-C RIC8B c.85-3129A>C - IntronicSNV - 1/8
1-63124465-T-G DOCK7 c.144+4231A>C - IntronicSNV - 2/48
11-61569830-C-T FADS1 c.*53G>A - 3-UTRSNV 12/12 -
8-116599199-T-C TRPS1 c.2700+29A>G - IntronicSNV - 5/6
2-21225281-C-T APOB c.13013G>A p.Ser4338Asn Missense 29/29 -
2-46166321-A-G PRKCE c.413-37247A>G - IntronicSNV - 2/14
8-116599199-T-G TRPS1 c.2700+29A>C - IntronicSNV - 5/6
3-119560606-T-A GSK3B c.1195+1496A>T - IntronicSNV - 10/10
3-119560606-T-C GSK3B c.1195+1496A>G - IntronicSNV - 10/10
13-95284980-C-A GPR180 c.*5555C>A - 3-UTRSNV 9/9 -
19-48376941-C-T SULT2A1 c.745+973G>A - IntronicSNV - 5/5
16-67954398-G-C PSKH1 c.958-6830G>C - IntronicSNV - 2/2
2-234679384-C-T UGT1A1 c.1305-1524C>T - IntronicSNV - 4/4
11-28279095-A-G METTL15 c.408-32658A>G - IntronicSNV - 4/7
16-57075781-C-T NLRC5 c.3030-113C>T - IntronicSNV - 17/47
11-28279095-A-T METTL15 c.408-32658A>T - IntronicSNV - 4/7
12-57844049-C-T INHBC c.*244C>T - 3-UTRSNV 2/2 -
9-107589744-C-T ABCA1 c.2116-294G>A - IntronicSNV - 15/49
7-73016862-T-C MLXIPL c.902-2837A>G - IntronicSNV - 7/16
14-24883887-G-A NYNRIN c.2932G>A p.Ala978Thr Missense 9/9 -
7-17837859-C-T SNX13 c.2513+454G>A - IntronicSNV - 24/25
7-44579180-G-C NPC1L1 c.816C>G p.Leu272Leu Synonymous 2/20 -
7-44579180-G-A NPC1L1 c.816C>T p.Leu272Leu Synonymous 2/20 -
2-165619163-T-C COBLL1 c.42-18778A>G - IntronicSNV - 1/13
2-165619163-T-G COBLL1 c.42-18778A>C - IntronicSNV - 1/13
17-81045854-T-A METRNL c.556+2655T>A - IntronicSNV - 2/3
1-18808292-C-A KLHDC7A c.817C>A p.His273Asn Missense 1/1 -
16-57006829-T-G CETP c.751-414T>G - IntronicSNV - 8/15
17-66875294-C-G ABCA8 c.3919-1474G>C - IntronicSNV - 30/37
19-11347493-T-C DOCK6 c.2136A>G p.Thr712Thr Synonymous 19/48 -
8-18255410-A-G NAT2 c.1-2104A>G - IntronicSNV - 1/1
19-2814181-C-G THOP1 c.*907C>G - IntergenicSNV 13/13 -
16-57010232-C-T CETP c.981+1169C>T - IntronicSNV - 10/15
13-111025118-A-G COL4A2 c.180+15219A>G - IntronicSNV - 4/47
12-125324798-C-A SCARB1 c.127-22545G>T - IntronicSNV - 1/12
12-110000193-C-T MMAB c.349-536G>A - IntronicSNV - 4/8
19-11336444-C-T DOCK6 c.2955+1569G>A - IntronicSNV - 24/47
1-92993807-C-T EVI5 c.2119-14280G>A - IntronicSNV - 17/17
16-15129940-C-T PDXDC1 c.2175C>T p.His725His Synonymous 23/23 -
16-15129940-C-A PDXDC1 c.2175C>A p.His725Gln Missense 23/23 -
11-61569306-C-A FADS1 c.*577G>T - 3-UTRSNV 12/12 -
11-116718802-T-G SIK3 c.3676-478A>C - intron_variant - 21/23
11-116718802-T-A SIK3 c.3676-478A>T - intron_variant - 21/23
11-61548874-G-A MYRF c.2659+73G>A - IntronicSNV - 20/25
19-11206575-G-A LDLR c.68-4324G>A - IntronicSNV - 1/17
2-27730940-T-G GCKR c.1337T>G p.Leu446Arg Missense 15/19 -
15-44245931-A-T FRMD5 c.103-29424T>A - IntronicSNV - 1/13
9-107571208-G-A ABCA1 c.4274+539C>T - IntronicSNV - 30/49
18-9522606-G-A RALBP1 c.1053+99G>A - IntronicSNV - 4/9
1-230295691-G-A GALNT2 c.127-18273G>A - IntronicSNV - 1/15
1-205130413-A-G DSTYK c.1921T>C p.Cys641Arg Missense 7/13 -
2-44092066-C-G ABCG8 c.965-7049C>G - IntronicSNV - 6/12
1-205130413-A-T DSTYK c.1921T>A p.Cys641Ser Missense 7/13 -
19-19717056-A-G PBX4 c.120-6882T>C - IntronicSNV - 1/7
16-72052348-A-G DHODH c.517+1343A>G - IntronicSNV - 4/8
2-165540800-T-C COBLL1 c.*1656A>G - 3-UTRSNV 14/14 -
6-160575985-C-T SLC22A1 c.1498+43C>T - IntronicSNV - 9/10
8-19815098-C-T LPL c.1018+1504C>T - IntronicSNV - 6/9
2-118576719-T-C DDX18 c.371-506T>C - IntronicSNV - 2/13
8-19812252-G-C LPL c.775+388G>C - IntronicSNV - 5/9
5-74656539-T-C HMGCR c.*372T>C - 3-UTRSNV 20/20 -
8-19812252-G-T LPL c.775+388G>T - IntronicSNV - 5/9
8-19812252-G-A LPL c.775+388G>A - IntronicSNV - 5/9
1-150958836-A-G ANXA9 c.497A>G p.Asp166Gly Missense 8/14 -
8-116602855-T-A TRPS1 c.2097-3024A>T - IntronicSNV - 4/6
16-78007470-A-G VAT1L c.1161+1640A>G - IntronicSNV - 8/8
1-220970028-A-G MARC1 c.493A>G p.Thr165Ala Missense 3/7 -
1-230294715-C-A GALNT2 c.127-19249C>A - IntronicSNV - 1/15
1-63025942-G-T DOCK7 c.2200-1051C>A - IntronicSNV - 19/48
9-15304782-C-A TTC39B c.240+2300G>T - IntronicSNV - 1/19
12-125287648-A-G SCARB1 c.1010-2860T>C - IntronicSNV - 7/12
10-65301725-T-C REEP3 c.32+20388T>C - IntronicSNV - 1/7
12-121423285-T-A HNF1A c.327-3351T>A - IntronicSNV - 1/9
12-121423285-T-C HNF1A c.327-3351T>C - IntronicSNV - 1/9