Publications:

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Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs.

Jci Insight

Chen, Xiao-Feng XF; Guo, Ming-Rui MR; Duan, Yuan-Yuan YY; Jiang, Feng F; Wu, Hao H; Dong, Shan-Shan SS; Zhou, Xiao-Rong XR; Thynn, Hlaing Nwe HN; Liu, Cong-Cong CC; Zhang, Lin L; Guo, Yan Y; Yang, Tie-Lin TL

Publication Date: 2020-09-03

Variant appearance in text: rs3789607

PubMed Link: 32879140

Variant Present in the following documents:

• jciinsight-5-136477-s105.xlsx, sheet 5

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Using Incomplete Trios to Boost Confidence in Family Based Association Studies.

Frontiers In Genetics

Dhankani, Varsha V; Gibbs, David L DL; Knijnenburg, Theo T; Kramer, Roger R; Vockley, Joseph J; Niederhuber, John J; Shmulevich, Ilya I; Bernard, Brady B

Publication Date: 2016

Variant appearance in text: rs3789607

PubMed Link: 27047537

Variant Present in the following documents:

• Main text
• fgene-07-00034.pdf

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Genetic heterogeneity of susceptibility gene in different ethnic populations: refining association study of PTPN22 for Graves' disease in a Chinese Han population.

Plos One

Xue, Liqiong L; Pan, Chunming C; Gu, Zhaohui Z; Zhao, Shuangxia S; Han, Bing B; Liu, Wei W; Yang, Shaoying S; Yu, Shasha S; Sun, Yixuan Y; Liang, Jun J; Gao, Guanqi G; Zhang, Xiaomei X; Yuan, Guoyue G; Li, Changgui C; Du, Wenhua W; Chen, Gang G; Chen, Jialun J; Song, Huaidong H

Publication Date: 2013

Variant appearance in text: rs3789607

PubMed Link: 24386393

Variant Present in the following documents:

• Main text
• pone.0084514.pdf

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The balance of expression of PTPN22 splice forms is significantly different in rheumatoid arthritis patients compared with controls.

Genome Medicine

Ronninger, Marcus M; Guo, Yongjing Y; Shchetynsky, Klementy K; Hill, Andrew A; Khademi, Mohsen M; Olsson, Tomas T; Reddy, Padmalatha S PS; Seddighzadeh, Maria M; Clark, James D JD; Lin, Lih-Ling LL; O'Toole, Margot M; Padyukov, Leonid L

Publication Date: 2012-01-20

Variant appearance in text: rs3789607

PubMed Link: 22264340

Variant Present in the following documents:

• Main text
• gm301.pdf

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The PTPN22 locus and rheumatoid arthritis: no evidence for an effect on risk independent of Arg620Trp.

Plos One

Wan Taib, Wan R WR; Smyth, Deborah J DJ; Merriman, Marilyn E ME; Dalbeth, Nicola N; Gow, Peter J PJ; Harrison, Andrew A AA; Highton, John J; Jones, Peter B B PB; Stamp, Lisa L; Steer, Sophia S; Todd, John A JA; Merriman, Tony R TR

Publication Date: 2010-10-21

Variant appearance in text: rs3789607

PubMed Link: 20975833

Variant Present in the following documents:

• Main text
• pone.0013544.pdf

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Evaluating epistatic interaction signals in complex traits using quantitative traits.

Bmc Proceedings

Mukherjee, Odity O; Sanapala, Krishna Rao KR; Anbazhagana, Padmanabhan P; Ghosh, Saurabh S

Publication Date: 2009-12-15

Variant appearance in text: rs3789607

PubMed Link: 20018078

Variant Present in the following documents:

• Main text

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Analysis of 19 genes for association with type I diabetes in the Type I Diabetes Genetics Consortium families.

Genes And Immunity

Howson, J M M JM; Walker, N M NM; Smyth, D J DJ; Todd, J A JA; ,

Publication Date: 2009-12

Variant appearance in text: rs3789607

PubMed Link: 19956106

Variant Present in the following documents:

• Main text

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Overview of the Rapid Response data.

Genes And Immunity

Brown, W M WM; Pierce, J J JJ; Hilner, J E JE; Perdue, L H LH; Lohman, K K; Lu, L L; de Bakker, P I W PI; Irenze, K K; Ziaugra, L L; Mirel, D B DB; ,

Publication Date: 2009-12

Variant appearance in text: rs3789607

PubMed Link: 19956101

Variant Present in the following documents:

• Main text

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rs2476601 T allele (R620W) defines high-risk PTPN22 type I diabetes-associated haplotypes with preliminary evidence for an additional protective haplotype.

Genes And Immunity

Steck, A K AK; Baschal, E E EE; Jasinski, J M JM; Boehm, B O BO; Bottini, N N; Concannon, P P; Julier, C C; Morahan, G G; Noble, J A JA; Polychronakos, C C; She, J X JX; Eisenbarth, G S GS; ,

Publication Date: 2009-12

Variant appearance in text: rs3789607

PubMed Link: 19956096

Variant Present in the following documents:

• Main text

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TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population.

Journal Of Biomedical Science

Lins, Tulio C TC; Abreu, Breno S BS; Pereira, Rinaldo W RW

Publication Date: 2009-08-14

Variant appearance in text: rs3789607

PubMed Link: 19682379

Variant Present in the following documents:

• Main text
• 1423-0127-16-73.pdf

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