Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Somatic mutation detection and KRAS amplification in testicular germ cell tumors.
Frontiers In Oncology
Cabral, Eduardo R M ERM; Pacanhella, Marilia F MF; Lengert, Andre V H AVH; Dos Reis, Mariana B MB; Leal, Leticia F LF; de Lima, Marcos A MA; da Silva, Aline L V ALV; Pinto, Icaro A IA; Reis, Rui M RM; Pinto, Mariana T MT; Cárcano, Flavio M FM
Molecular Heterogeneity of Pediatric AML with Atypical Promyelocytes Accumulation in Children-A Single Center Experience.
Genes
Borkovskaia, Aleksandra A; Bogacheva, Sofia S; Konyukhova, Tatiana T; Dadakhanova, Elina E; Gaskova, Marina M; Soldatkina, Olga O; Dubrovina, Maria M; Popov, Alexander A; Mikhailova, Ekaterina E; Inushkina, Evgenia E; Kazanov, Marat M; Matveev, Evgeniy E; Novichkova, Galina G; Maschan, Michael M; Maschan, Alexey A; Olshanskaya, Yulia Y; Zerkalenkova, Elena E
Network expansion of genetic associations defines a pleiotropy map of human cell biology.
Nature Genetics
Barrio-Hernandez, Inigo I; Schwartzentruber, Jeremy J; Shrivastava, Anjali A; Del-Toro, Noemi N; Gonzalez, Asier A; Zhang, Qian Q; Mountjoy, Edward E; Suveges, Daniel D; Ochoa, David D; Ghoussaini, Maya M; Bradley, Glyn G; Hermjakob, Henning H; Orchard, Sandra S; Dunham, Ian I; Anderson, Carl A CA; Porras, Pablo P; Beltrao, Pedro P
Integrative genomic analysis of childhood acute lymphoblastic leukaemia lacking a genetic biomarker in the UKALL2003 clinical trial.
Leukemia
Schwab, Claire C; Cranston, Ruth E RE; Ryan, Sarra L SL; Butler, Ellie E; Winterman, Emily E; Hawking, Zoe Z; Bashton, Matthew M; Enshaei, Amir A; Russell, Lisa J LJ; Kingsbury, Zoya Z; Peden, John F JF; Barretta, Emilio E; Murray, James J; Gibson, Jude J; Hinchliffe, Andrew C AC; Bain, Robert R; Vora, Ajay A; Bentley, David R DR; Ross, Mark T MT; Moorman, Anthony V AV; Harrison, Christine J CJ
Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH.
Nature Genetics
Hung, King L KL; Luebeck, Jens J; Dehkordi, Siavash R SR; Colón, Caterina I CI; Li, Rui R; Wong, Ivy Tsz-Lo IT; Coruh, Ceyda C; Dharanipragada, Prashanthi P; Lomeli, Shirley H SH; Weiser, Natasha E NE; Moriceau, Gatien G; Zhang, Xiao X; Bailey, Chris C; Houlahan, Kathleen E KE; Yang, Wenting W; González, Rocío Chamorro RC; Swanton, Charles C; Curtis, Christina C; Jamal-Hanjani, Mariam M; Henssen, Anton G AG; Law, Julie A JA; Greenleaf, William J WJ; Lo, Roger S RS; Mischel, Paul S PS; Bafna, Vineet V; Chang, Howard Y HY
Whole-genome analysis identifies novel drivers and high-risk double-hit events in relapsed/refractory myeloma.
Blood
Ansari-Pour, Naser N; Samur, Mehmet K MK; Flynt, Erin E; Gooding, Sarah S; Towfic, Fadi F; Stong, Nicholas N; Ortiz Estevez, Maria M; Mavrommatis, Konstantinos K; Walker, Brian A BA; Morgan, Gareth J GJ; Munshi, Nikhil C NC; Avet Loiseau, Herve H; Thakurta, Anjan A
Immune Phenotypes and Target Antigens of Clonally Expanded Bone Marrow T Cells in Treatment-Naïve Multiple Myeloma.
Cancer Immunology Research
Welters, Carlotta C; Lammoglia Cobo, María Fernanda MF; Stein, Christian Alexander CA; Hsu, Meng-Tung MT; Ben Hamza, Amin A; Penter, Livius L; Chen, Xiaojing X; Buccitelli, Christopher C; Popp, Oliver O; Mertins, Philipp P; Dietze, Kerstin K; Bullinger, Lars L; Moosmann, Andreas A; Blanc, Eric E; Beule, Dieter D; Gerbitz, Armin A; Strobel, Julian J; Hackstein, Holger H; Rahn, Hans-Peter HP; Dornmair, Klaus K; Blankenstein, Thomas T; Hansmann, Leo L
Distinguishing STAT3/STAT5B Mutated Large Granular Lymphocyte Leukemia from Myeloid Neoplasms by Genetic Profiling.
Blood Advances
Kavesh, Mark M; Mohebnasab, Maedeh M; Angel, Marcela Riveros MR; Xie, Wei W; Raess, Philipp W PW; Cui, Wei W; Press, Richard D RD; Yang, Guang G; Li, Peng P
Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis.
Nature Genetics
Kar, Siddhartha P SP; Quiros, Pedro M PM; Gu, Muxin M; Jiang, Tao T; Mitchell, Jonathan J; Langdon, Ryan R; Iyer, Vivek V; Barcena, Clea C; Vijayabaskar, M S MS; Fabre, Margarete A MA; Carter, Paul P; Petrovski, Slavé S; Burgess, Stephen S; Vassiliou, George S GS
BMX kinase mediates gilteritinib resistance in FLT3-mutated AML through microenvironmental factors.
Blood Advances
Buelow, Daelynn R DR; Bhatnagar, Bhavana B; Orwick, Shelley J SJ; Jeon, Jae Yoon JY; Eisenmann, Eric D ED; Stromatt, Jack C JC; Pabla, Navjot Singh NS; Blachly, James S JS; Baker, Sharyn D SD; Blaser, Bradley W BW
The genetic heterogeneity and drug resistance mechanisms of relapsed refractory multiple myeloma.
Nature Communications
Vo, Josh N JN; Wu, Yi-Mi YM; Mishler, Jeanmarie J; Hall, Sarah S; Mannan, Rahul R; Wang, Lisha L; Ning, Yu Y; Zhou, Jin J; Hopkins, Alexander C AC; Estill, James C JC; Chan, Wallace K B WKB; Yesil, Jennifer J; Cao, Xuhong X; Rao, Arvind A; Tsodikov, Alexander A; Talpaz, Moshe M; Cole, Craig E CE; Ye, Jing C JC; , ; Bergsagel, P Leif PL; Auclair, Daniel D; Cho, Hearn Jay HJ; Robinson, Dan R DR; Chinnaiyan, Arul M AM
Publication Date: 2022-06-29
Variant appearance in text: NRAS: 34G>C; Gly12Arg; rs121913250
Pathophysiologic and clinical implications of molecular profiles resultant from deletion 5q.
Ebiomedicine
Adema, Vera V; Palomo, Laura L; Walter, Wencke W; Mallo, Mar M; Hutter, Stephan S; La Framboise, Thomas T; Arenillas, Leonor L; Meggendorfer, Manja M; Radivoyevitch, Tomas T; Xicoy, Blanca B; Pellagatti, Andrea A; Haferlach, Claudia C; Boultwood, Jacqueline J; Kern, Wolfgang W; Visconte, Valeria V; Sekeres, Mikkael M; Barnard, John J; Haferlach, Torsten T; Solé, Francesc F; Maciejewski, Jaroslaw P JP
RUNX1 mutations contribute to the progression of MDS due to disruption of antitumor cellular defense: a study on patients with lower-risk MDS.
Leukemia
Kaisrlikova, Monika M; Vesela, Jitka J; Kundrat, David D; Votavova, Hana H; Dostalova Merkerova, Michaela M; Krejcik, Zdenek Z; Divoky, Vladimir V; Jedlicka, Marek M; Fric, Jan J; Klema, Jiri J; Mikulenkova, Dana D; Stastna Markova, Marketa M; Lauermannova, Marie M; Mertova, Jolana J; Soukupova Maaloufova, Jacqueline J; Jonasova, Anna A; Cermak, Jaroslav J; Belickova, Monika M
UBTF::ATXN7L3 gene fusion defines novel B cell precursor ALL subtype with CDX2 expression and need for intensified treatment.
Leukemia
Bastian, Lorenz L; Hartmann, Alina M AM; Beder, Thomas T; Hänzelmann, Sonja S; Kässens, Jan J; Bultmann, Miriam M; Hoeppner, Marc P MP; Franzenburg, Sören S; Wittig, Michael M; Franke, Andre A; Nagel, Inga I; Spielmann, Malte M; Reimer, Niklas N; Busch, Hauke H; Schwartz, Stefan S; Steffen, Björn B; Viardot, Andreas A; Döhner, Konstanze K; Kondakci, Mustafa M; Wulf, Gerald G; Wendelin, Knut K; Renzelmann, Andrea A; Kiani, Alexander A; Trautmann, Heiko H; Neumann, Martin M; Gökbuget, Nicola N; Brüggemann, Monika M; Baldus, Claudia D CD
Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia.
Blood Cancer Discovery
Umeda, Masayuki M; Ma, Jing J; Huang, Benjamin J BJ; Hagiwara, Kohei K; Westover, Tamara T; Abdelhamed, Sherif S; Barajas, Juan M JM; Thomas, Melvin E ME; Walsh, Michael P MP; Song, Guangchun G; Tian, Liqing L; Liu, Yanling Y; Chen, Xiaolong X; Kolekar, Pandurang P; Tran, Quang Q; Foy, Scott G SG; Maciaszek, Jamie L JL; Kleist, Andrew B AB; Leonti, Amanda R AR; Ju, Bengsheng B; Easton, John J; Wu, Huiyun H; Valentine, Virginia V; Valentine, Marcus B MB; Liu, Yen-Chun YC; Ries, Rhonda E RE; Smith, Jenny L JL; Parganas, Evan E; Iacobucci, Ilaria I; Hiltenbrand, Ryan R; Miller, Jonathan J; Myers, Jason R JR; Rampersaud, Evadnie E; Rahbarinia, Delaram D; Rusch, Michael M; Wu, Gang G; Inaba, Hiroto H; Wang, Yi-Cheng YC; Alonzo, Todd A TA; Downing, James R JR; Mullighan, Charles G CG; Pounds, Stanley S; Babu, M Madan MM; Zhang, Jinghui J; Rubnitz, Jeffrey E JE; Meshinchi, Soheil S; Ma, Xiaotu X; Klco, Jeffery M JM
Prognostic Impact of Tumor Budding on Moroccan Colon Cancer Patients.
International Journal Of Surgical Oncology
El Agy, Fatima F; El Bardai, Sanae S; Bouguenouch, Laila L; Lahmidani, Nada N; El Abkari, Mohammed M; Benjelloun, El Bachir EB; Ousadden, Abdelmalek A; Mazaz, Khalid K; ImaneToughrai, ; Ibrahimi, Sidi Adil SA; Benbrahim, Zineb Z; Chbani, Laila L
The Dawn of next generation DNA sequencing in myelodysplastic syndromes- experience from Pakistan.
Bmc Genomics
Anwar, Nida N; Memon, Faheem Ahmed FA; Shahid, Saba S; Shakeel, Muhammad M; Irfan, Muhammad M; Arshad, Aisha A; Naz, Arshi A; Ujjan, Ikram Din ID; Shamsi, Tahir T
The Dawn of next generation DNA sequencing in myelodysplastic syndromes- experience from Pakistan.
Bmc Genomics
Anwar, Nida N; Memon, Faheem Ahmed FA; Shahid, Saba S; Shakeel, Muhammad M; Irfan, Muhammad M; Arshad, Aisha A; Naz, Arshi A; Ujjan, Ikram Din ID; Shamsi, Tahir T
Gallbladder Cancer: Current Insights in Genetic Alterations and Their Possible Therapeutic Implications.
Cancers
Kuipers, Hendrien H; de Bitter, Tessa J J TJJ; de Boer, Marieke T MT; van der Post, Rachel S RS; Nijkamp, Maarten W MW; de Reuver, Philip R PR; Fehrmann, Rudolf S N RSN; Hoogwater, Frederik J H FJH
Successful allogeneic hematopoietic stem cell transplantation in patients with VEXAS syndrome: a 2-center experience.
Blood Advances
Diarra, Ava A; Duployez, Nicolas N; Fournier, Elise E; Preudhomme, Claude C; Coiteux, Valérie V; Magro, Leonardo L; Quesnel, Bruno B; Heiblig, Maël M; Sujobert, Pierre P; Barraco, Fiorenza F; Balsat, Marie M; Scanvion, Quentin Q; Hachulla, Eric E; Launay, David D; Yakoub-Agha, Ibrahim I; Terriou, Louis L
Targeted Therapy of Papillary Thyroid Cancer: A Comprehensive Genomic Analysis.
Frontiers In Endocrinology
Hescheler, Daniel A DA; Riemann, Burkhard B; Hartmann, Milan J M MJM; Michel, Maximilian M; Faust, Michael M; Bruns, Christiane J CJ; Alakus, Hakan H; Chiapponi, Costanza C
Molecular and functional profiling identifies therapeutically targetable vulnerabilities in plasmablastic lymphoma.
Nature Communications
Frontzek, Fabian F; Staiger, Annette M AM; Zapukhlyak, Myroslav M; Xu, Wendan W; Bonzheim, Irina I; Borgmann, Vanessa V; Sander, Philip P; Baptista, Maria Joao MJ; Heming, Jan-Niklas JN; Berning, Philipp P; Wullenkord, Ramona R; Erdmann, Tabea T; Lutz, Mathias M; Veratti, Pia P; Ehrenfeld, Sophia S; Wienand, Kirsty K; Horn, Heike H; Goodlad, John R JR; Wilson, Matthew R MR; Anagnostopoulos, Ioannis I; Lamping, Mario M; Gonzalez-Barca, Eva E; Climent, Fina F; Salar, Antonio A; Castellvi, Josep J; Abrisqueta, Pau P; Menarguez, Javier J; Aldamiz, Teresa T; Richter, Julia J; Klapper, Wolfram W; Tzankov, Alexandar A; Dirnhofer, Stefan S; Rosenwald, Andreas A; Mate, José Luis JL; Tapia, Gustavo G; Lenz, Peter P; Miething, Cornelius C; Hartmann, Wolfgang W; Chapuy, Björn B; Fend, Falko F; Ott, German G; Navarro, José-Tomas JT; Grau, Michael M; Lenz, Georg G