Extensive intratumor regional epigenetic heterogeneity in clear cell renal cell carcinoma targets kidney enhancers and is associated with poor outcome.
Clinical Epigenetics
El Khoury, Louis Y LY; Pan, Xiaoyu X; Hlady, Ryan A RA; Wagner, Ryan T RT; Shaikh, Shafiq S; Wang, Liguo L; Humphreys, Mitchell R MR; Castle, Erik P EP; Stanton, Melissa L ML; Ho, Thai H TH; Robertson, Keith D KD
Immunogenomic analysis of human brain metastases reveals diverse immune landscapes across genetically distinct tumors.
Cell Reports. Medicine
Álvarez-Prado, Ángel F ÁF; Maas, Roeltje R RR; Soukup, Klara K; Klemm, Florian F; Kornete, Mara M; Krebs, Fanny S FS; Zoete, Vincent V; Berezowska, Sabina S; Brouland, Jean-Philippe JP; Hottinger, Andreas F AF; Daniel, Roy T RT; Hegi, Monika E ME; Joyce, Johanna A JA
Succinate dehydrogenase and MYC-associated factor X mutations in pituitary neuroendocrine tumours.
Endocrine-Related Cancer
Loughrey, Paul Benjamin PB; Roncaroli, Federico F; Healy, Estelle E; Weir, Philip P; Basetti, Madhu M; Casey, Ruth T RT; Hunter, Steven J SJ; Korbonits, Márta M
Publication Date: 2022-10-01
Variant appearance in text: SDHB: 487T>C; Ser163Pro
Germline mutations in mitochondrial complex I reveal genetic and targetable vulnerability in IDH1-mutant acute myeloid leukaemia.
Nature Communications
Bassal, Mahmoud A MA; Samaraweera, Saumya E SE; Lim, Kelly K; Benard, Brooks A BA; Bailey, Sheree S; Kaur, Satinder S; Leo, Paul P; Toubia, John J; Thompson-Peach, Chloe C; Nguyen, Tran T; Maung, Kyaw Ze Ya KZY; Casolari, Debora A DA; Iarossi, Diana G DG; Pagani, Ilaria S IS; Powell, Jason J; Pitson, Stuart S; Natera, Siria S; Roessner, Ute U; Lewis, Ian D ID; Brown, Anna L AL; Tenen, Daniel G DG; Robinson, Nirmal N; Ross, David M DM; Majeti, Ravindra R; Gonda, Thomas J TJ; Thomas, Daniel D; D'Andrea, Richard J RJ
Prevalence of germline pathogenic variants in 22 cancer susceptibility genes in Swedish pediatric cancer patients.
Scientific Reports
von Stedingk, Kristoffer K; Stjernfelt, Karl-Johan KJ; Kvist, Anders A; Wahlström, Cecilia C; Kristoffersson, Ulf U; Stenmark-Askmalm, Marie M; Wiebe, Thomas T; Hjorth, Lars L; Koster, Jan J; Olsson, Håkan H; Øra, Ingrid I
Publication Date: 2021-03-05
Variant appearance in text: SDHB: 487T>C; Ser163Pro; rs33927012
REVEL and BayesDel outperform other in silico meta-predictors for clinical variant classification.
Scientific Reports
Tian, Yuan Y; Pesaran, Tina T; Chamberlin, Adam A; Fenwick, R Bryn RB; Li, Shuwei S; Gau, Chia-Ling CL; Chao, Elizabeth C EC; Lu, Hsiao-Mei HM; Black, Mary Helen MH; Qian, Dajun D
TRPV4 and KRAS and FGFR1 gain-of-function mutations drive giant cell lesions of the jaw.
Nature Communications
Gomes, Carolina Cavalieri CC; Gayden, Tenzin T; Bajic, Andrea A; Harraz, Osama F OF; Pratt, Jonathan J; Nikbakht, Hamid H; Bareke, Eric E; Diniz, Marina Gonçalves MG; Castro, Wagner Henriques WH; St-Onge, Pascal P; Sinnett, Daniel D; Han, HyeRim H; Rivera, Barbara B; Mikael, Leonie G LG; De Jay, Nicolas N; Kleinman, Claudia L CL; Valera, Elvis Terci ET; Bassenden, Angelia V AV; Berghuis, Albert M AM; Majewski, Jacek J; Nelson, Mark T MT; Gomez, Ricardo Santiago RS; Jabado, Nada N
Publication Date: 2018-11-01
Variant appearance in text: SDHB: S163P; rs33927012
Metabolome-guided genomics to identify pathogenic variants in isocitrate dehydrogenase, fumarate hydratase, and succinate dehydrogenase genes in pheochromocytoma and paraganglioma.
Genetics In Medicine : Official Journal Of The American College Of Medical Genetics
Richter, Susan S; Gieldon, Laura L; Pang, Ying Y; Peitzsch, Mirko M; Huynh, Thanh T; Leton, Rocio R; Viana, Bruna B; Ercolino, Tonino T; Mangelis, Anastasios A; Rapizzi, Elena E; Menschikowski, Mario M; Aust, Daniela D; Kroiss, Matthias M; Beuschlein, Felix F; Gudziol, Volker V; Timmers, Henri Jlm HJ; Lenders, Jacques J; Mannelli, Massimo M; Cascon, Alberto A; Pacak, Karel K; Robledo, Mercedes M; Eisenhofer, Graeme G; Klink, Barbara B
Publication Date: 2019-03
Variant appearance in text: SDHB: 487T>C; Ser163Pro; rs33927012
Tumour risks and genotype-phenotype correlations associated with germline variants in succinate dehydrogenase subunit genes SDHB, SDHC and SDHD.
Journal Of Medical Genetics
Andrews, Katrina A KA; Ascher, David B DB; Pires, Douglas Eduardo Valente DEV; Barnes, Daniel R DR; Vialard, Lindsey L; Casey, Ruth T RT; Bradshaw, Nicola N; Adlard, Julian J; Aylwin, Simon S; Brennan, Paul P; Brewer, Carole C; Cole, Trevor T; Cook, Jackie A JA; Davidson, Rosemarie R; Donaldson, Alan A; Fryer, Alan A; Greenhalgh, Lynn L; Hodgson, Shirley V SV; Irving, Richard R; Lalloo, Fiona F; McConachie, Michelle M; McConnell, Vivienne P M VPM; Morrison, Patrick J PJ; Murday, Victoria V; Park, Soo-Mi SM; Simpson, Helen L HL; Snape, Katie K; Stewart, Susan S; Tomkins, Susan E SE; Wallis, Yvonne Y; Izatt, Louise L; Goudie, David D; Lindsay, Robert S RS; Perry, Colin G CG; Woodward, Emma R ER; Antoniou, Antonis C AC; Maher, Eamonn R ER
A MUTYH germline mutation is associated with small intestinal neuroendocrine tumors.
Endocrine-Related Cancer
Dumanski, Jan P JP; Rasi, Chiara C; Björklund, Peyman P; Davies, Hanna H; Ali, Abir S AS; Grönberg, Malin M; Welin, Staffan S; Sorbye, Halfdan H; Grønbæk, Henning H; Cunningham, Janet L JL; Forsberg, Lars A LA; Lind, Lars L; Ingelsson, Erik E; Stålberg, Peter P; Hellman, Per P; Tiensuu Janson, Eva E
Publication Date: 2017-08
Variant appearance in text: SDHB: Ser163Pro; rs33927012
A knowledge-based framework for the discovery of cancer-predisposing variants using large-scale sequencing breast cancer data.
Breast Cancer Research : Bcr
Melloni, Giorgio E M GEM; Mazzarella, Luca L; Bernard, Loris L; Bodini, Margherita M; Russo, Anna A; Luzi, Lucilla L; Pelicci, Pier Giuseppe PG; Riva, Laura L
Next-generation DNA sequencing identifies novel gene variants and pathways involved in specific language impairment.
Scientific Reports
Chen, Xiaowei Sylvia XS; Reader, Rose H RH; Hoischen, Alexander A; Veltman, Joris A JA; Simpson, Nuala H NH; Francks, Clyde C; Newbury, Dianne F DF; Fisher, Simon E SE
Publication Date: 2017-04-25
Variant appearance in text: SDHB: S163P; rs33927012
SDHB-related pheochromocytoma and paraganglioma penetrance and genotype-phenotype correlations.
Journal Of Cancer Research And Clinical Oncology
Jochmanova, Ivana I; Wolf, Katherine I KI; King, Kathryn S KS; Nambuba, Joan J; Wesley, Robert R; Martucci, Victoria V; Raygada, Margarita M; Adams, Karen T KT; Prodanov, Tamara T; Fojo, Antonio Tito AT; Lazurova, Ivica I; Pacak, Karel K
Publication Date: 2017-08
Variant appearance in text: SDHB: 487T>C; Ser163Pro
Identification of eight novel SDHB, SDHC, SDHD germline variants in Danish pheochromocytoma/paraganglioma patients.
Hereditary Cancer In Clinical Practice
Bennedbæk, Marc M; Rossing, Maria M; Rasmussen, Åse K ÅK; Gerdes, Anne-Marie AM; Skytte, Anne-Bine AB; Jensen, Uffe B UB; Nielsen, Finn C FC; Hansen, Thomas V O TVO
Identification of cancer predisposition variants in apparently healthy individuals using a next-generation sequencing-based family genomics approach.
Human Genomics
Karageorgos, Ioannis I; Mizzi, Clint C; Giannopoulou, Efstathia E; Pavlidis, Cristiana C; Peters, Brock A BA; Zagoriti, Zoi Z; Stenson, Peter D PD; Mitropoulos, Konstantinos K; Borg, Joseph J; Kalofonos, Haralabos P HP; Drmanac, Radoje R; Stubbs, Andrew A; van der Spek, Peter P; Cooper, David N DN; Katsila, Theodora T; Patrinos, George P GP
Publication Date: 2015-06-20
Variant appearance in text: SDHB: 487T>C; S163P; rs33927012
Pituitary adenoma with paraganglioma/pheochromocytoma (3PAs) and succinate dehydrogenase defects in humans and mice.
The Journal Of Clinical Endocrinology And Metabolism
Xekouki, Paraskevi P; Szarek, Eva E; Bullova, Petra P; Giubellino, Alessio A; Quezado, Martha M; Mastroyannis, Spyridon A SA; Mastorakos, Panagiotis P; Wassif, Christopher A CA; Raygada, Margarita M; Rentia, Nadia N; Dye, Louis L; Cougnoux, Antony A; Koziol, Deloris D; Sierra, Maria de La Luz Mde L; Lyssikatos, Charalampos C; Belyavskaya, Elena E; Malchoff, Carl C; Moline, Jessica J; Eng, Charis C; Maher, Louis James LJ; Pacak, Karel K; Lodish, Maya M; Stratakis, Constantine A CA
Publication Date: 2015-05
Variant appearance in text: SDHB: Ser163Pro; rs33927012
Germline and somatic SDHx alterations in apparently sporadic differentiated thyroid cancer.
Endocrine-Related Cancer
Ni, Ying Y; Seballos, Spencer S; Ganapathi, Shireen S; Gurin, Danielle D; Fletcher, Benjamin B; Ngeow, Joanne J; Nagy, Rebecca R; Kloos, Richard T RT; Ringel, Matthew D MD; LaFramboise, Thomas T; Eng, Charis C
Publication Date: 2015-04
Variant appearance in text: SDHB: S163P; rs33927012
Sporadic hemangioblastomas are characterized by cryptic VHL inactivation.
Acta Neuropathologica Communications
Shankar, Ganesh M GM; Taylor-Weiner, Amaro A; Lelic, Nina N; Jones, Robert T RT; Kim, James C JC; Francis, Joshua M JM; Abedalthagafi, Malak M; Borges, Lawrence F LF; Coumans, Jean-Valery JV; Curry, William T WT; Nahed, Brian V BV; Shin, John H JH; Paek, Sun Ha SH; Park, Sung-Hye SH; Stewart, Chip C; Lawrence, Michael S MS; Cibulskis, Kristian K; Thorner, Aaron R AR; Van Hummelen, Paul P; Stemmer-Rachamimov, Anat O AO; Batchelor, Tracy T TT; Carter, Scott L SL; Hoang, Mai P MP; Santagata, Sandro S; Louis, David N DN; Barker, Fred G FG; Meyerson, Matthew M; Getz, Gad G; Brastianos, Priscilla K PK; Cahill, Daniel P DP
Publication Date: 2014-12-24
Variant appearance in text: SDHB: 487T>C; S163P; rs33927012
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: SDHB: S163P; rs33927012
Germline PTEN, SDHB-D, and KLLN alterations in endometrial cancer patients with Cowden and Cowden-like syndromes: an international, multicenter, prospective study.
Cancer
Mahdi, Haider H; Mester, Jessica L JL; Nizialek, Emily A EA; Ngeow, Joanne J; Michener, Chad C; Eng, Charis C
Publication Date: 2015-03-01
Variant appearance in text: SDHB: 487T>C; Ser163Pro
Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing.
Plos One
Bodian, Dale L DL; McCutcheon, Justine N JN; Kothiyal, Prachi P; Huddleston, Kathi C KC; Iyer, Ramaswamy K RK; Vockley, Joseph G JG; Niederhuber, John E JE
Publication Date: 2014
Variant appearance in text: SDHB: S163P; rs33927012
PATH-SCAN: a reporting tool for identifying clinically actionable variants.
Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing
Daneshjou, Roxana R; Zappala, Zachary Z; Kukurba, Kim K; Boyle, Sean M SM; Ormond, Kelly E KE; Klein, Teri E TE; Snyder, Michael M; Bustamante, Carlos D CD; Altman, Russ B RB; Montgomery, Stephen B SB
Sequencing and analysis of a South Asian-Indian personal genome.
Bmc Genomics
Gupta, Ravi R; Ratan, Aakrosh A; Rajesh, Changanamkandath C; Chen, Rong R; Kim, Hie Lim HL; Burhans, Richard R; Miller, Webb W; Santhosh, Sam S; Davuluri, Ramana V RV; Butte, Atul J AJ; Schuster, Stephan C SC; Seshagiri, Somasekar S; Thomas, George G
Over-representation of the G12S polymorphism of the SDHD gene in patients with MEN2A syndrome.
Clinics (Sao Paulo, Brazil)
Lendvai, Nikoletta N; Tóth, Miklos M; Valkusz, Zsuzsanna Z; Bekő, Gabriella G; Szücs, Nikolette N; Csajbók, Eva E; Igaz, Péter P; Kriszt, Balázs B; Kovács, Balázs B; Rácz, Károly K; Patócs, Attila A
Prevalence of germline mutations in patients with pheochromocytoma or abdominal paraganglioma and sporadic presentation: a population-based study in Western Sweden.
World Journal Of Surgery
Muth, Andreas A; Abel, Frida F; Jansson, Svante S; Nilsson, Ola O; Ahlman, Håkan H; Wängberg, Bo B
An immunohistochemical procedure to detect patients with paraganglioma and phaeochromocytoma with germline SDHB, SDHC, or SDHD gene mutations: a retrospective and prospective analysis.
The Lancet. Oncology
van Nederveen, Francien H FH; Gaal, José J; Favier, Judith J; Korpershoek, Esther E; Oldenburg, Rogier A RA; de Bruyn, Elly M C A EM; Sleddens, Hein F B M HF; Derkx, Pieter P; Rivière, Julie J; Dannenberg, Hilde H; Petri, Bart-Jeroen BJ; Komminoth, Paul P; Pacak, Karel K; Hop, Wim C J WC; Pollard, Patrick J PJ; Mannelli, Massimo M; Bayley, Jean-Pierre JP; Perren, Aurel A; Niemann, Stephan S; Verhofstad, Albert A AA; de Bruïne, Adriaan P AP; Maher, Eamonn R ER; Tissier, Frédérique F; Méatchi, Tchao T; Badoual, Cécile C; Bertherat, Jérôme J; Amar, Laurence L; Alataki, Despoina D; Van Marck, Eric E; Ferrau, Francesco F; François, Jerney J; de Herder, Wouter W WW; Peeters, Mark-Paul F M Vrancken MP; van Linge, Anne A; Lenders, Jacques W M JW; Gimenez-Roqueplo, Anne-Paule AP; de Krijger, Ronald R RR; Dinjens, Winand N M WN
Germline mutations and variants in the succinate dehydrogenase genes in Cowden and Cowden-like syndromes.
American Journal Of Human Genetics
Ni, Ying Y; Zbuk, Kevin M KM; Sadler, Tammy T; Patocs, Attila A; Lobo, Glenn G; Edelman, Emily E; Platzer, Petra P; Orloff, Mohammed S MS; Waite, Kristin A KA; Eng, Charis C