Publications:

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Transcriptional and metabolic programs promote the expansion of follicular helper T cells in lupus-prone mice.

Iscience

Gong, Minghao M; Choi, Seung-Chul SC; Park, Yuk Pheel YP; Zou, Xueyang X; Elshikha, Ahmed S AS; Gerriets, Valerie A VA; Rathmell, Jeffrey C JC; Mohamazadeh, Mansour M; Morel, Laurence L

Publication Date: 2023-05-19

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PubMed Link: 37216123

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Dichotomous ovarian cancer-initiating potential of Pax8+ cells revealed by a mouse genetic mosaic model.

Iscience

Zeng, Jianhao J; Alvarez-Yela, Astrid Catalina AC; Casarez, Eli E; Jiang, Ying Y; Wang, Lixin L; Kelly, Brianna E BE; Jenkins, Taylor T; Ke, Eugene E; Atkins, Kristen A KA; Janes, Kevin A KA; Slack-Davis, Jill K JK; Zong, Hui H

Publication Date: 2023-05-19

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PubMed Link: 37207276

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Prevalence, causes and impact of TP53-loss phenocopying events in human tumors.

Bmc Biology

Fito-Lopez, Bruno B; Salvadores, Marina M; Alvarez, Miguel-Martin MM; Supek, Fran F

Publication Date: 2023-04-24

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PubMed Link: 37095494

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• 12915_2023_Article_1595.pdf

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Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders.

Cell Genomics

Pintacuda, Greta G; Hsu, Yu-Han H YH; Tsafou, Kalliopi K; Li, Ka Wan KW; Martín, Jacqueline M JM; Riseman, Jackson J; Biagini, Julia C JC; Ching, Joshua K T JKT; Mena, Daya D; Gonzalez-Lozano, Miguel A MA; Egri, Shawn B SB; Jaffe, Jake J; Smit, August B AB; Fornelos, Nadine N; Eggan, Kevin C KC; Lage, Kasper K

Publication Date: 2023-03-08

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PubMed Link: 36950384

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• mmc15.pdf
• main.pdf

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Enhancement of protein translation by CRISPR/dCasRx coupled with SINEB2 repeat of noncoding RNAs.

Nucleic Acids Research

Cao, Congcong C; Li, Aolin A; Xu, Chaojie C; Wu, Baorui B; Liu, Jun J; Liu, Yuchen Y

Publication Date: 2023-01-30

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PubMed Link: 36715335

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• Main text
• gkad010.pdf

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PTK6 inhibits autophagy to promote uveal melanoma tumorigenesis by binding to SOCS3 and regulating mTOR phosphorylation.

Cell Death & Disease

Liu, Bo B; Yao, Xueting X; Zhang, Chaoyang C; Liu, Yufen Y; Wei, Li L; Huang, Qinying Q; Wang, Mengting M; Zhang, Yanchen Y; Hu, Danning D; Wu, Wencan W

Publication Date: 2023-01-23

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PubMed Link: 36690663

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• 41419_2023_Article_5590.pdf

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Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival.

Molecular Systems Biology

Sousa, Abel A; Dugourd, Aurelien A; Memon, Danish D; Petursson, Borgthor B; Petsalaki, Evangelia E; Saez-Rodriguez, Julio J; Beltrao, Pedro P

Publication Date: 2023-01-23

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PubMed Link: 36688815

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• MSB-19-e10631.pdf

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Downregulation of UBE4B promotes CNS axon regrowth and functional recovery after stroke.

Iscience

Jin, Shuang S; Chen, Xiangfeng X; Zheng, Hanyu H; Cai, Wanxiong W; Lin, Xurong X; Kong, Xiangxing X; Ni, Yingchun Y; Ye, Jingjia J; Li, Xiaodan X; Shen, Luoan L; Guo, Binjie B; Abdelrahman, Zeinab Z; Zhou, Songlin S; Mao, Susu S; Wang, Yaxian Y; Yao, Chun C; Gu, Xiaosong X; Yu, Bin B; Wang, Zhiping Z; Wang, Xuhua X

Publication Date: 2023-01-20

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PubMed Link: 36654858

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Remodeling of the tumor microenvironment through PAK4 inhibition sensitizes tumors to immune checkpoint blockade.

Cancer Research Communications

Abril-Rodríguez, Gabriel G; Torrejon, Davis Y DY; Karin, Daniel D; Campbell, Katie M KM; Medina, Egmidio E; Saco, Justin D JD; Galvez, Mildred M; Champhekar, Ameya S AS; Perez-Garcilazo, Ivan I; Baselga-Carretero, Ignacio I; Singh, Jas J; Comin-Anduix, Begoña B; Puig-Saus, Cristina C; Ribas, Antoni A

Publication Date: 2022-10

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PubMed Link: 36588582

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• Main text
• crc-21-0133.pdf

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A compendium of co-regulated mitoribosomal proteins in pan-cancer uncovers collateral defective events in tumor malignancy.

Iscience

Chang, Ching-Wen CW; Wei, Zhuang Z; Durell, Stewart R SR; Ma, Lichun L; Forgues, Marshonna M; Wang, Xin Wei XW

Publication Date: 2022-10-21

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PubMed Link: 36274950

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• Main text

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Vasoactive intestinal peptide-VIPR2 signaling regulates tumor cell migration.

Frontiers In Oncology

Asano, Satoshi S; Yamasaka, Misa M; Ozasa, Kairi K; Sakamoto, Kotaro K; Hayata-Takano, Atsuko A; Nakazawa, Takanobu T; Hashimoto, Hitoshi H; Waschek, James A JA; Ago, Yukio Y

Publication Date: 2022

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PubMed Link: 36237322

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• fonc-12-852358.pdf

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Characterization of aging cancer-associated fibroblasts draws implications in prognosis and immunotherapy response in low-grade gliomas.

Frontiers In Genetics

Zhou, Zijian Z; Wei, Jinhong J; Kuang, Lijun L; Zhang, Ke K; Liu, Yini Y; He, Zhongming Z; Li, Luo L; Lu, Bin B

Publication Date: 2022

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PubMed Link: 36092895

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• Main text
• fgene-13-897083.pdf

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Lighting a Fire: Gasdermin-Mediated Pyroptosis Remodels the Glioma Microenvironment and Promotes Immune Checkpoint Blockade Response.

Frontiers In Immunology

Cai, Yonghua Y; Li, Ke K; Lin, Jie J; Liang, Xianqiu X; Xu, Wei W; Zhan, Zhengming Z; Xue, Shuaishuai S; Zeng, Yu Y; Chai, Peng P; Mao, Yangqi Y; Song, Zibin Z; Han, Lei L; Song, Ye Y; Zhang, Xian X; Wang, Hai H

Publication Date: 2022

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PubMed Link: 35784306

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• Main text
• fimmu-13-910490.pdf

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Extracellular vesicles enriched with an endothelial cell pro-survival microRNA affects skin tissue regeneration.

Molecular Therapy. Nucleic Acids

Fernandes, Hugo H; Zonnari, Alessandra A; Abreu, Ricardo R; Aday, Sezin S; Barão, Marta M; Albino, Inês I; Lino, Miguel M; Branco, Ana A; Seabra, Cátia C; Barata, Tânia T; Leal, Ermelindo C EC; Tralhão, José Guilherme JG; Gonçalves, Lino L; de Jong, Alwin A; Peters, Hendrika A B HAB; de Vries, Margreet R MR; da Costa Martins, Paula P; Quax, Paul H A PHA; Ferreira, Lino L

Publication Date: 2022-06-14

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PubMed Link: 35474734

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CLCF1 Is a Novel Potential Immune-Related Target With Predictive Value for Prognosis and Immunotherapy Response in Glioma.

Frontiers In Immunology

Jiang, Yuan Y; Ji, Qiankun Q; Long, Xiaoyan X; Wang, Peng P; Tu, Zewei Z; Zhang, Xian X; Zhu, Xingen X; Huang, Kai K; Li, Jingying J

Publication Date: 2022

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PubMed Link: 35265072

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• Main text
• fimmu-13-810832.pdf

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Targeting Cancer Metabolism Plasticity with JX06 Nanoparticles via Inhibiting PDK1 Combined with Metformin for Endometrial Cancer Patients with Diabetes.

Advanced Science (Weinheim, Baden-Wurttemberg, Germany)

Yang, Xiao X; Cheng, Yuan Y; Zhou, Jingyi J; Zhang, Lingpu L; Li, Xingchen X; Wang, Zhiqi Z; Yin, Shenyi S; Zhai, LiRong L; Huang, Ting T; Wu, Xiaotong X; Shen, Boqiang B; Dong, Yangyang Y; Zhao, Lijun L; Chi, Yujing Y; Jia, Yuanyuan Y; Wang, Jiaqi J; He, Yijiao Y; Dong, Xiying X; Xiao, Haihua H; Wang, Jianliu J

Publication Date: 2022-03

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PubMed Link: 35064767

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• ADVS-9-2104472.pdf

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A Highly Sensitive Fluorescent Akt Biosensor Reveals Lysosome-Selective Regulation of Lipid Second Messengers and Kinase Activity.

Acs Central Science

Chen, Mingyuan M; Sun, Tengqian T; Zhong, Yanghao Y; Zhou, Xin X; Zhang, Jin J

Publication Date: 2021-12-22

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PubMed Link: 34963894

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• Main text
• oc1c00919.pdf

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Comprehensive transcriptomic characterization reveals core genes and module associated with immunological changes via 1619 samples of brain glioma.

Cell Death & Disease

Zhang, Ying Y; Ma, Wenping W; Fan, Wenhua W; Ren, Changyuan C; Xu, Jianbao J; Zeng, Fan F; Bao, Zhaoshi Z; Jiang, Tao T; Zhao, Zheng Z

Publication Date: 2021-12-08

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PubMed Link: 34880206

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• Main text
• 41419_2021_Article_4427.pdf

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Comprehensive transcriptomic characterization reveals core genes and module associated with immunological changes via 1619 samples of brain glioma.

Cell Death & Disease

Zhang, Ying Y; Ma, Wenping W; Fan, Wenhua W; Ren, Changyuan C; Xu, Jianbao J; Zeng, Fan F; Bao, Zhaoshi Z; Jiang, Tao T; Zhao, Zheng Z

Publication Date: 2021-12-08

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PubMed Link: 34880206

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• Main text
• 41419_2021_Article_4427.pdf

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TNFSF13 Is a Novel Onco-Inflammatory Marker and Correlates With Immune Infiltration in Gliomas.

Frontiers In Immunology

Chen, Rui R; Wang, Xinxing X; Dai, Ziyu Z; Wang, Zeyu Z; Wu, Wantao W; Hu, Zhengang Z; Zhang, Xun X; Liu, Zhixiong Z; Zhang, Hao H; Cheng, Quan Q

Publication Date: 2021

Variant appearance in text: PTEN: S10C

PubMed Link: 34712225

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ZIP10 drives osteosarcoma proliferation and chemoresistance through ITGA10-mediated activation of the PI3K/AKT pathway.

Journal Of Experimental & Clinical Cancer Research : Cr

Li, Hongyu H; Shen, Xin X; Ma, Mengjun M; Liu, Wenzhou W; Yang, Wen W; Wang, Peng P; Cai, Zhaopeng Z; Mi, Rujia R; Lu, Yixuan Y; Zhuang, Jiahao J; Jiang, Yuhang Y; Song, Yihui Y; Wu, Yanfeng Y; Shen, Huiyong H

Publication Date: 2021-10-27

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PubMed Link: 34706747

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• 13046_2021_Article_2146.pdf

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Pan-cancer analysis combined with experiments predicts CTHRC1 as a therapeutic target for human cancers.

Cancer Cell International

Peng, Dazhao D; Wei, Cheng C; Zhang, Xiaoyang X; Li, Shenghui S; Liang, Hao H; Zheng, Xingyu X; Jiang, Shulong S; Han, Lei L

Publication Date: 2021-10-26

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PubMed Link: 34702252

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• Main text
• 12935_2021_Article_2266.pdf

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Characterization of the Genomic and Immunologic Diversity of Malignant Brain Tumors through Multisector Analysis.

Cancer Discovery

Schaettler, Maximilian O MO; Richters, Megan M MM; Wang, Anthony Z AZ; Skidmore, Zachary L ZL; Fisk, Bryan B; Miller, Katherine E KE; Vickery, Tammi L TL; Kim, Albert H AH; Chicoine, Michael R MR; Osbun, Joshua W JW; Leuthardt, Eric C EC; Dowling, Joshua L JL; Zipfel, Gregory J GJ; Dacey, Ralph G RG; Lu, Hsiang-Chih HC; Johanns, Tanner M TM; Griffith, Obi L OL; Mardis, Elaine R ER; Griffith, Malachi M; Dunn, Gavin P GP

Publication Date: 2022-01

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PubMed Link: 34610950

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Genomic evidence suggests that cutaneous neuroendocrine carcinomas can arise from squamous dysplastic precursors.

Modern Pathology : An Official Journal Of The United States And Canadian Academy Of Pathology, Inc

Harms, Paul W PW; Verhaegen, Monique E ME; Hu, Kevin K; Hrycaj, Steven M SM; Chan, May P MP; Liu, Chia-Jen CJ; Grachtchouk, Marina M; Patel, Rajiv M RM; Udager, Aaron M AM; Dlugosz, Andrzej A AA

Publication Date: 2022-04

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PubMed Link: 34593967

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• nihms-1739265.pdf

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Itraconazole inhibits nuclear delivery of extracellular vesicle cargo by disrupting the entry of late endosomes into the nucleoplasmic reticulum.

Journal Of Extracellular Vesicles

Santos, Mark F MF; Rappa, Germana G; Karbanová, Jana J; Fontana, Simona S; Bella, Maria Antonietta Di MAD; Pope, Marshall R MR; Parrino, Barbara B; Cascioferro, Stella Maria SM; Vistoli, Giulio G; Diana, Patrizia P; Cirrincione, Girolamo G; Arena, Goffredo O GO; Woo, Gyunghwi G; Huang, Kevin K; Huynh, Tony T; Moschetti, Marta M; Alessandro, Riccardo R; Corbeil, Denis D; Lorico, Aurelio A

Publication Date: 2021-08

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PubMed Link: 34429859

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Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression.

Plos Genetics

Aiderus, Aziz A; Newberg, Justin Y JY; Guzman-Rojas, Liliana L; Contreras-Sandoval, Ana M AM; Meshey, Amanda L AL; Jones, Devin J DJ; Amaya-Manzanares, Felipe F; Rangel, Roberto R; Ward, Jerrold M JM; Lee, Song-Choon SC; Ban, Kenneth Hon-Kim KH; Rogers, Keith K; Rogers, Susan M SM; Selvanesan, Luxmanan L; McNoe, Leslie A LA; Copeland, Neal G NG; Jenkins, Nancy A NA; Tsai, Kenneth Y KY; Black, Michael A MA; Mann, Karen M KM; Mann, Michael B MB

Publication Date: 2021-08

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PubMed Link: 34398873

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• pgen.1009094.pdf

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Single-cell atlas reveals meningeal leukocyte heterogeneity in the developing mouse brain.

Genes & Development

Zelco, Aura A; Börjesson, Vanja V; de Kanter, Jurrian K JK; Lebrero-Fernandez, Cristina C; Lauschke, Volker M VM; Rocha-Ferreira, Eridan E; Nilsson, Gisela G; Nair, Syam S; Svedin, Pernilla P; Bemark, Mats M; Hagberg, Henrik H; Mallard, Carina C; Holstege, Frank C P FCP; Wang, Xiaoyang X

Publication Date: 2021-08-01

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PubMed Link: 34301765

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Single-cell atlas reveals meningeal leukocyte heterogeneity in the developing mouse brain.

Genes & Development

Zelco, Aura A; Börjesson, Vanja V; de Kanter, Jurrian K JK; Lebrero-Fernandez, Cristina C; Lauschke, Volker M VM; Rocha-Ferreira, Eridan E; Nilsson, Gisela G; Nair, Syam S; Svedin, Pernilla P; Bemark, Mats M; Hagberg, Henrik H; Mallard, Carina C; Holstege, Frank C P FCP; Wang, Xiaoyang X

Publication Date: 2021-08-01

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PubMed Link: 34301765

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Cepharanthine sensitizes human triple negative breast cancer cells to chemotherapeutic agent epirubicin via inducing cofilin oxidation-mediated mitochondrial fission and apoptosis.

Acta Pharmacologica Sinica

Shen, Li-Wen LW; Jiang, Xiu-Xing XX; Li, Zhi-Qiang ZQ; Li, Jie J; Wang, Mei M; Jia, Guan-Fei GF; Ding, Xin X; Lei, Ling L; Gong, Qi-Hai QH; Gao, Ning N

Publication Date: 2022-01

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PubMed Link: 34294886

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• 41401_2021_Article_715.pdf

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Recent developments in the treatment of small cell lung cancer.

European Respiratory Review : An Official Journal Of The European Respiratory Society

Hiddinga, Birgitta I BI; Raskin, Jo J; Janssens, Annelies A; Pauwels, Patrick P; Van Meerbeeck, Jan P JP

Publication Date: 2021-09-30

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PubMed Link: 34261744

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Pten Regulates Cardiomyocyte Differentiation by Modulating Non-CG Methylation via Dnmt3.

Advanced Science (Weinheim, Baden-Wurttemberg, Germany)

Wang, Wuming W; Lu, Gang G; Liu, Hong-Bin HB; Xiong, Zhiqiang Z; Leung, Ho-Duen HD; Cao, Ruican R; Pang, Alan Lap-Yin AL; Su, Xianwei X; Law, Patrick Wai Nok PWN; Zhao, Zhiju Z; Chen, Zi-Jiang ZJ; Chan, Wai-Yee WY

Publication Date: 2021-09

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PubMed Link: 34247447

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• Main text
• ADVS-8-2100849.pdf

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Bidirectional Cross-talk between MAOA and AR Promotes Hormone-Dependent and Castration-Resistant Prostate Cancer.

Cancer Research

Wei, Jing J; Yin, Lijuan L; Li, Jingjing J; Wang, Jing J; Pu, Tianjie T; Duan, Peng P; Lin, Tzu-Ping TP; Gao, Allen C AC; Wu, Boyang Jason BJ

Publication Date: 2021-08-15

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PubMed Link: 34167949

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Cotargeting of miR-126-3p and miR-221-3p inhibits PIK3R2 and PTEN, reducing lung cancer growth and metastasis by blocking AKT and CXCR4 signalling.

Molecular Oncology

Di Paolo, Daniela D; Pontis, Francesca F; Moro, Massimo M; Centonze, Giovanni G; Bertolini, Giulia G; Milione, Massimo M; Mensah, Mavis M; Segale, Miriam M; Petraroia, Ilaria I; Borzi, Cristina C; Suatoni, Paola P; Brignole, Chiara C; Perri, Patrizia P; Ponzoni, Mirco M; Pastorino, Ugo U; Sozzi, Gabriella G; Fortunato, Orazio O

Publication Date: 2021-11

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PubMed Link: 34107168

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• MOL2-15-2969.pdf

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Analysis of alternative polyadenylation from single-cell RNA-seq using scDaPars reveals cell subpopulations invisible to gene expression.

Genome Research

Gao, Yipeng Y; Li, Lei L; Amos, Christopher I CI; Li, Wei W

Publication Date: 2021-10

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PubMed Link: 34035046

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• Main text
• 1856.pdf

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The Predictive Value of Monocytes in Immune Microenvironment and Prognosis of Glioma Patients Based on Machine Learning.

Frontiers In Immunology

Zhang, Nan N; Dai, Ziyu Z; Wu, Wantao W; Wang, Zeyu Z; Cao, Hui H; Zhang, Yakun Y; Wang, Zhanchao Z; Zhang, Hao H; Cheng, Quan Q

Publication Date: 2021

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PubMed Link: 33959130

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PDIA5 is Correlated With Immune Infiltration and Predicts Poor Prognosis in Gliomas.

Frontiers In Immunology

Zhang, Hao H; He, Jialin J; Dai, Ziyu Z; Wang, Zeyu Z; Liang, Xisong X; He, Fengqiong F; Xia, Zhiwei Z; Feng, Songshan S; Cao, Hui H; Zhang, Liyang L; Cheng, Quan Q

Publication Date: 2021

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PubMed Link: 33664747

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SUMOylation of YTHDF2 promotes mRNA degradation and cancer progression by increasing its binding affinity with m6A-modified mRNAs.

Nucleic Acids Research

Hou, Guofang G; Zhao, Xian X; Li, Lian L; Yang, Qianqian Q; Liu, Xiaojia X; Huang, Caihu C; Lu, Runhui R; Chen, Ran R; Wang, Yanli Y; Jiang, Bin B; Yu, Jianxiu J

Publication Date: 2021-03-18

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PubMed Link: 33577677

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• gkab065.pdf

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Transneuronal delivery of hyper-interleukin-6 enables functional recovery after severe spinal cord injury in mice.

Nature Communications

Leibinger, Marco M; Zeitler, Charlotte C; Gobrecht, Philipp P; Andreadaki, Anastasia A; Gisselmann, Günter G; Fischer, Dietmar D

Publication Date: 2021-01-15

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PubMed Link: 33452250

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• 41467_2020_Article_20112.pdf

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PremPS: Predicting the impact of missense mutations on protein stability.

Plos Computational Biology

Chen, Yuting Y; Lu, Haoyu H; Zhang, Ning N; Zhu, Zefeng Z; Wang, Shuqin S; Li, Minghui M

Publication Date: 2020-12

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PubMed Link: 33378330

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• pcbi.1008543.pdf

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Anti-oncogene PTPN13 inactivation by hepatitis B virus X protein counteracts IGF2BP1 to promote hepatocellular carcinoma progression.

Oncogene

Yan, Yongcong Y; Huang, Pinbo P; Mao, Kai K; He, Chuanchao C; Xu, Qiaodong Q; Zhang, Mengyu M; Liu, Haohan H; Zhou, Zhenyu Z; Zhou, Qiming Q; Zhou, Qianlei Q; Ou, Bing B; Liu, Qinghua Q; Lin, Jianhong J; Chen, Ruibin R; Wang, Jie J; Zhang, Jianlong J; Xiao, Zhiyu Z

Publication Date: 2021-01

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PubMed Link: 33051595

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High-throughput single-cell functional elucidation of neurodevelopmental disease-associated genes reveals convergent mechanisms altering neuronal differentiation.

Genome Research

Lalli, Matthew A MA; Avey, Denis D; Dougherty, Joseph D JD; Milbrandt, Jeffrey J; Mitra, Robi D RD

Publication Date: 2020-09

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PubMed Link: 32887689

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• 1317.pdf

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Most Commonly Mutated Genes in High-Grade Serous Ovarian Carcinoma Are Nonessential for Ovarian Surface Epithelial Stem Cell Transformation.

Cell Reports

Yamulla, Robert Joseph RJ; Nalubola, Shreya S; Flesken-Nikitin, Andrea A; Nikitin, Alexander Yu AY; Schimenti, John C JC

Publication Date: 2020-09-01

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PubMed Link: 32877668

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The Splicing Factor SF2 Is Critical for Hyperproliferation and Survival in a TORC1-Dependent Model of Early Tumorigenesis in Drosophila.

International Journal Of Molecular Sciences

Parniewska, Malgorzata Maria MM; Stocker, Hugo H

Publication Date: 2020-06-24

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PubMed Link: 32599686

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• ijms-21-04465.pdf

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