Predictive Biomarkers for Immune Checkpoint Inhibitors in Metastatic Breast Cancer.
Cancer Medicine
Sivapiragasam, Abirami A; Ashok Kumar, Prashanth P; Sokol, Ethan S ES; Albacker, Lee A LA; Killian, Jonathan K JK; Ramkissoon, Shakti H SH; Huang, Richard S P RSP; Severson, Eric A EA; Brown, Charlotte A CA; Danziger, Natalie N; McGregor, Kimberly K; Ross, Jeffrey S JS
Phase and context shape the function of composite oncogenic mutations.
Nature
Gorelick, Alexander N AN; Sánchez-Rivera, Francisco J FJ; Cai, Yanyan Y; Bielski, Craig M CM; Biederstedt, Evan E; Jonsson, Philip P; Richards, Allison L AL; Vasan, Neil N; Penson, Alexander V AV; Friedman, Noah D ND; Ho, Yu-Jui YJ; Baslan, Timour T; Bandlamudi, Chaitanya C; Scaltriti, Maurizio M; Schultz, Nikolaus N; Lowe, Scott W SW; Reznik, Ed E; Taylor, Barry S BS
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Nature Communications
Menden, Michael P MP; Wang, Dennis D; Mason, Mike J MJ; Szalai, Bence B; Bulusu, Krishna C KC; Guan, Yuanfang Y; Yu, Thomas T; Kang, Jaewoo J; Jeon, Minji M; Wolfinger, Russ R; Nguyen, Tin T; Zaslavskiy, Mikhail M; , ; Jang, In Sock IS; Ghazoui, Zara Z; Ahsen, Mehmet Eren ME; Vogel, Robert R; Neto, Elias Chaibub EC; Norman, Thea T; Tang, Eric K Y EKY; Garnett, Mathew J MJ; Veroli, Giovanni Y Di GYD; Fawell, Stephen S; Stolovitzky, Gustavo G; Guinney, Justin J; Dry, Jonathan R JR; Saez-Rodriguez, Julio J
Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer.
Nature Communications
Wagner, Alex H AH; Devarakonda, Siddhartha S; Skidmore, Zachary L ZL; Krysiak, Kilannin K; Ramu, Avinash A; Trani, Lee L; Kunisaki, Jason J; Masood, Ashiq A; Waqar, Saiama N SN; Spies, Nicholas C NC; Morgensztern, Daniel D; Waligorski, Jason J; Ponce, Jennifer J; Fulton, Robert S RS; Maggi, Leonard B LB; Weber, Jason D JD; Watson, Mark A MA; O'Conor, Christopher J CJ; Ritter, Jon H JH; Olsen, Rachelle R RR; Cheng, Haixia H; Mukhopadhyay, Anandaroop A; Can, Ismail I; Cessna, Melissa H MH; Oliver, Trudy G TG; Mardis, Elaine R ER; Wilson, Richard K RK; Griffith, Malachi M; Griffith, Obi L OL; Govindan, Ramaswamy R
Scholz, S L SL; Cosgarea, I I; Süßkind, D D; Murali, R R; Möller, I I; Reis, H H; Leonardelli, S S; Schilling, B B; Schimming, T T; Hadaschik, E E; Franklin, C C; Paschen, A A; Sucker, A A; Steuhl, K P KP; Schadendorf, D D; Westekemper, H H; Griewank, K G KG
Publication Date: 2018-05
Variant appearance in text: PTEN: 758T>A; Ile253Asn
A Landscape of Pharmacogenomic Interactions in Cancer.
Cell
Iorio, Francesco F; Knijnenburg, Theo A TA; Vis, Daniel J DJ; Bignell, Graham R GR; Menden, Michael P MP; Schubert, Michael M; Aben, Nanne N; Gonçalves, Emanuel E; Barthorpe, Syd S; Lightfoot, Howard H; Cokelaer, Thomas T; Greninger, Patricia P; van Dyk, Ewald E; Chang, Han H; de Silva, Heshani H; Heyn, Holger H; Deng, Xianming X; Egan, Regina K RK; Liu, Qingsong Q; Mironenko, Tatiana T; Mitropoulos, Xeni X; Richardson, Laura L; Wang, Jinhua J; Zhang, Tinghu T; Moran, Sebastian S; Sayols, Sergi S; Soleimani, Maryam M; Tamborero, David D; Lopez-Bigas, Nuria N; Ross-Macdonald, Petra P; Esteller, Manel M; Gray, Nathanael S NS; Haber, Daniel A DA; Stratton, Michael R MR; Benes, Cyril H CH; Wessels, Lodewyk F A LFA; Saez-Rodriguez, Julio J; McDermott, Ultan U; Garnett, Mathew J MJ
PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.
Plos Computational Biology
Bendl, Jaroslav J; Musil, Miloš M; Štourač, Jan J; Zendulka, Jaroslav J; Damborský, Jiří J; Brezovský, Jan J
Less frequently mutated genes in colorectal cancer: evidences from next-generation sequencing of 653 routine cases.
Journal Of Clinical Pathology
Malapelle, Umberto U; Pisapia, Pasquale P; Sgariglia, Roberta R; Vigliar, Elena E; Biglietto, Maria M; Carlomagno, Chiara C; Giuffrè, Giuseppe G; Bellevicine, Claudio C; Troncone, Giancarlo G
Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.
Nature Genetics
Cooper, Colin S CS; Eeles, Rosalind R; Wedge, David C DC; Van Loo, Peter P; Gundem, Gunes G; Alexandrov, Ludmil B LB; Kremeyer, Barbara B; Butler, Adam A; Lynch, Andrew G AG; Camacho, Niedzica N; Massie, Charlie E CE; Kay, Jonathan J; Luxton, Hayley J HJ; Edwards, Sandra S; Kote-Jarai, ZSofia Z; Dennis, Nening N; Merson, Sue S; Leongamornlert, Daniel D; Zamora, Jorge J; Corbishley, Cathy C; Thomas, Sarah S; Nik-Zainal, Serena S; O'Meara, Sarah S; Matthews, Lucy L; Clark, Jeremy J; Hurst, Rachel R; Mithen, Richard R; Bristow, Robert G RG; Boutros, Paul C PC; Fraser, Michael M; Cooke, Susanna S; Raine, Keiran K; Jones, David D; Menzies, Andrew A; Stebbings, Lucy L; Hinton, Jon J; Teague, Jon J; McLaren, Stuart S; Mudie, Laura L; Hardy, Claire C; Anderson, Elizabeth E; Joseph, Olivia O; Goody, Victoria V; Robinson, Ben B; Maddison, Mark M; Gamble, Stephen S; Greenman, Christopher C; Berney, Dan D; Hazell, Steven S; Livni, Naomi N; , ; Fisher, Cyril C; Ogden, Christopher C; Kumar, Pardeep P; Thompson, Alan A; Woodhouse, Christopher C; Nicol, David D; Mayer, Erik E; Dudderidge, Tim T; Shah, Nimish C NC; Gnanapragasam, Vincent V; Voet, Thierry T; Campbell, Peter P; Futreal, Andrew A; Easton, Douglas D; Warren, Anne Y AY; Foster, Christopher S CS; Stratton, Michael R MR; Whitaker, Hayley C HC; McDermott, Ultan U; Brewer, Daniel S DS; Neal, David E DE
p16INK4a expression and absence of activated B-RAF are independent predictors of chemosensitivity in melanoma tumors.
Neoplasia (New York, N.Y.)
Gallagher, Stuart J SJ; Thompson, John F JF; Indsto, James J; Scurr, Lyndee L LL; Lett, Margaret M; Gao, Bo-Fu BF; Dunleavey, Ruth R; Mann, Graham J GJ; Kefford, Richard F RF; Rizos, Helen H