NPAT c.37+19T>A

Variant ID: 11-108093208-A-T

NM_002519.2(NPAT):c.37+19T>A

This variant was identified in 31 publications

View GRCh38 version.




Publications:


Comprehensive proteogenomic characterization of early duodenal cancer reveals the carcinogenesis tracks of different subtypes.

Nature Communications
Li, Lingling L; Jiang, Dongxian D; Liu, Hui H; Guo, Chunmei C; Zhao, Rui R; Zhang, Qiao Q; Xu, Chen C; Qin, Zhaoyu Z; Feng, Jinwen J; Liu, Yang Y; Wang, Haixing H; Chen, Weijie W; Zhang, Xue X; Li, Bin B; Bai, Lin L; Tian, Sha S; Tan, Subei S; Yu, Zixiang Z; Chen, Lingli L; Huang, Jie J; Zhao, Jian-Yuan JY; Hou, Yingyong Y; Ding, Chen C
Publication Date: 2023-03-29

Variant appearance in text: rs228589
PubMed Link: 36991000
Variant Present in the following documents:
  • 41467_2023_37221_MOESM5_ESM.xlsx, sheet 3
View BVdb publication page



Association of variations in the CAT and prognosis in lung cancer patients with platinum-based chemotherapy.

Frontiers In Pharmacology
Liu, Jia-Si JS; Liu, Jun-Yan JY; Xiao, Qi Q; Li, Xiang-Ping XP; Chen, Juan J; Liu, Zhao-Qian ZQ
Publication Date: 2023

Variant appearance in text: rs228589
PubMed Link: 36969849
Variant Present in the following documents:
  • Main text
  • fphar-14-1119837.pdf
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Establishment and characterization of a new mantle cell lymphoma cell line with a NOTCH2 mutation, Arbo.

Ejhaem
Safa, Firas F; Rasmussen, Terri T; Lobelle-Rich, Patricia P; Collier, Stephanie S; Milligan, Nicholas N; Schmeig, John J; Schmid, Janet J; Wiewiorowski, Carol C; Totaro, Denise D; Brown, Theresa C TC; Satyavarapu, Ishwarya I; Badoo, Melody M; Ungerleider, Nathan N; Flemington, Erik K EK; Safah, Hana H; Saba, Nakhle S NS
Publication Date: 2022-11

Variant appearance in text: rs228589
PubMed Link: 36467812
Variant Present in the following documents:
  • JHA2-3-1326-s001.xlsx, sheet 1
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PLK2 Single Nucleotide Variant in Gastric Cancer Patients Affects miR-23b-5p Binding.

Journal Of Gastric Cancer
Dominkuš, Pia Pužar PP; Mesic, Aner A; Hudler, Petra P
Publication Date: 2022-10

Variant appearance in text: rs228589
PubMed Link: 36316110
Variant Present in the following documents:
  • jgc-22-348.pdf
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Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Publication Date: 2022-10-14

Variant appearance in text: rs228589
PubMed Link: 36241656
Variant Present in the following documents:
  • 41598_2022_20939_MOESM14_ESM.xlsx, sheet 2
  • 41598_2022_20939_MOESM15_ESM.xlsx, sheet 2
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A genomic deletion encompassing CRYBB2-CRYBB2P1 is responsible for autosomal recessive congenital cataracts.

Human Genome Variation
Irum, Bushra B; Kabir, Firoz F; Shoshany, Nadav N; Khan, Shahid Y SY; Rauf, Bushra B; Naeem, Muhammad Asif MA; Qaiser, Tanveer A TA; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Publication Date: 2022-09-08

Variant appearance in text: rs228589
PubMed Link: 36075891
Variant Present in the following documents:
  • 41439_2022_208_MOESM5_ESM.xlsx, sheet 2
  • 41439_2022_208_MOESM3_ESM.xlsx, sheet 2
View BVdb publication page



Case Report: Primary Leptomeningeal Medulloblastoma in a Child: Clinical Case Report and Literature Review.

Frontiers In Pediatrics
Morgacheva, Daria D; Daks, Alexandra A; Smirnova, Anna A; Kim, Aleksandr A; Ryzhkova, Daria D; Mitrofanova, Lubov L; Staliarova, Alena A; Omelina, Evgeniya E; Pindyurin, Alexey A; Fedorova, Olga O; Shuvalov, Oleg O; Petukhov, Alexey A; Dinikina, Yulia Y
Publication Date: 2022

Variant appearance in text: rs228589
PubMed Link: 35899134
Variant Present in the following documents:
  • Table_1.xlsx, sheet 1
View BVdb publication page



TP53 common variants and interaction with PPP1R13L and CD3EAP SNPs and lung cancer risk and smoking behavior in a Chinese population.

Biomedical Journal
Yin, Jiaoyang J; Hou, Wei W; Vogel, Ulla U; Li, Xinxin X; Ma, Yegang Y; Wang, Chunhong C; Wang, Huiwen H; Sun, Zhenxiang Z
Publication Date: 2022-02

Variant appearance in text: rs228589
PubMed Link: 35351459
Variant Present in the following documents:
  • Main text
  • main.pdf
View BVdb publication page



Genetic variations in ATM and H2AX loci contribute to risk of hematological abnormalities in individuals exposed to BTEX chemicals.

Journal Of Clinical Laboratory Analysis
Jafari Roshan, Samaneh S; Mansoori, Yaser Y; Hosseini, Seyed Reza SR; Sabour, Davood D; Daraei, Abdolreza A
Publication Date: 2022-04

Variant appearance in text: rs228589
PubMed Link: 35235704
Variant Present in the following documents:
  • Main text
  • JCLA-36-e24321.pdf
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Case Report: A Variant Non-ketotic Hyperglycinemia With GLRX5 Mutations: Manifestation of Deficiency of Activities of the Respiratory Chain Enzymes.

Frontiers In Genetics
Feng, Wei-Xing WX; Zhuo, Xiu-Wei XW; Liu, Zhi-Mei ZM; Li, Jiu-Wei JW; Zhang, Wei-Hua WH; Wu, Yun Y; Han, Tong-Li TL; Fang, Fang F
Publication Date: 2021

Variant appearance in text: NPAT: 37+19T>A; rs228589
PubMed Link: 34054912
Variant Present in the following documents:
  • Table_2.xlsx, sheet 1
View BVdb publication page



Disseminated Talaromyces marneffei Infection in a Non-HIV Infant With a Homozygous Private Variant of RELB.

Frontiers In Cellular And Infection Microbiology
Ding, Xiaofang X; Huang, Han H; Zhong, Lili L; Chen, Min M; Peng, Fang F; Zhang, Bing B; Cui, Xinyu X; Yang, Xiu-An XA
Publication Date: 2021

Variant appearance in text: rs228589
PubMed Link: 33791233
Variant Present in the following documents:
  • Table_2.xlsx, sheet 1
View BVdb publication page



Functional Analysis of Promoter Variants in Genes Involved in Sex Steroid Action, DNA Repair and Cell Cycle Control.

Genes
Hamdi, Yosr Y; Leclerc, Martin M; Dumont, Martine M; Dubois, Stéphane S; Tranchant, Martine M; Reimnitz, Guy G; Soucy, Penny P; Cassart, Pauline P; Ouimet, Manon M; Sinnett, Daniel D; Chaieb, M'Hamed Lajmi Lakhal MLL; Simard, Jacques J
Publication Date: 2019-02-28

Variant appearance in text: rs228589
PubMed Link: 30823486
Variant Present in the following documents:
  • Main text
  • genes-10-00186.pdf
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Gene-gene and gene-environment interaction data for platinum-based chemotherapy in non-small cell lung cancer.

Scientific Data
Wang, Lei-Yun LY; Cui, Jia-Jia JJ; Liu, Jun-Yan JY; Guo, Ao-Xiang AX; Zhao, Zhen-Yu ZY; Liu, Ying-Zi YZ; Wu, Ji-Chu JC; Li, Min M; Hu, Cheng-Ping CP; Gao, Yang Y; Zhou, Hong-Hao HH; Yin, Ji-Ye JY
Publication Date: 2018-12-11

Variant appearance in text: rs228589
PubMed Link: 30531820
Variant Present in the following documents:
  • Main text
View BVdb publication page



The association between early-onset cardiac events caused by neoadjuvant or adjuvant chemotherapy in triple-negative breast cancer patients and some novel autophagy-related polymorphisms in their genomic DNA: a real-world study.

Cancer Communications (London, England)
Liu, Binliang B; An, Tao T; Li, Meiying M; Yi, Zongbi Z; Li, Chunxiao C; Sun, Xiaoying X; Guan, Xiuwen X; Li, Lixi L; Wang, Yanfeng Y; Zhang, Yuhui Y; Xu, Binghe B; Ma, Fei F; Zeng, Yixin Y
Publication Date: 2018-12-04

Variant appearance in text: rs228589
PubMed Link: 30514381
Variant Present in the following documents:
  • Main text
  • 40880_2018_Article_343.pdf
View BVdb publication page



Genetic Evidence Supporting the Role of the Calcium Channel, CACNA1S, in Tooth Cusp and Root Patterning.

Frontiers In Physiology
Laugel-Haushalter, Virginie V; Morkmued, Supawich S; Stoetzel, Corinne C; Geoffroy, Véronique V; Muller, Jean J; Boland, Anne A; Deleuze, Jean-François JF; Chennen, Kirsley K; Pitiphat, Waranuch W; Dollfus, Hélène H; Niederreither, Karen K; Bloch-Zupan, Agnès A; Pungchanchaikul, Patimaporn P
Publication Date: 2018

Variant appearance in text: rs228589
PubMed Link: 30319441
Variant Present in the following documents:
  • Table_7.xlsx, sheet 1
  • Table_5.xlsx, sheet 1
  • Table_6.xlsx, sheet 1
View BVdb publication page



The role of the ataxia telangiectasia mutated gene in lung cancer: recent advances in research.

Therapeutic Advances In Respiratory Disease
Xu, Yanling Y; Gao, Peng P; Lv, Xuejiao X; Zhang, Lin L; Zhang, Jie J
Publication Date: 2017-09

Variant appearance in text: rs228589
PubMed Link: 28825373
Variant Present in the following documents:
  • Main text
View BVdb publication page



Gene-gene and gene-environment interactions influence platinum-based chemotherapy response and toxicity in non-small cell lung cancer patients.

Scientific Reports
Cui, Jia-Jia JJ; Wang, Lei-Yun LY; Zhu, Tao T; Gong, Wei-Jing WJ; Zhou, Hong-Hao HH; Liu, Zhao-Qian ZQ; Yin, Ji-Ye JY
Publication Date: 2017-07-11

Variant appearance in text: rs228589
PubMed Link: 28698656
Variant Present in the following documents:
  • Main text
View BVdb publication page



Whole-exome sequencing analysis of Waardenburg syndrome in a Chinese family.

Human Genome Variation
Chen, Dezhong D; Zhao, Na N; Wang, Jing J; Li, Zhuoyu Z; Wu, Changxin C; Fu, Jie J; Xiao, Han H
Publication Date: 2017

Variant appearance in text: rs228589
PubMed Link: 28690861
Variant Present in the following documents:
  • hgv201727-s1.xls, sheet 1
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Ataxia Telangiectasia-Mutated (ATM)Polymorphisms and Risk of Lung Cancer in a Chinese Population.

Frontiers In Public Health
Myneni, Ajay A AA; Chang, Shen-Chih SC; Niu, Rungui R; Liu, Li L; Zhao, Baoxing B; Shi, Jianping J; Han, Xiaoyou X; Li, Jiawei J; Su, Jia J; Yu, Shunzhang S; Zhang, Zuo-Feng ZF; Mu, Lina L
Publication Date: 2017

Variant appearance in text: rs228589
PubMed Link: 28642860
Variant Present in the following documents:
  • Main text
  • fpubh-05-00102.pdf
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Investigation of DNA repair-related SNPs underlying susceptibility to papillary thyroid carcinoma reveals MGMT as a novel candidate gene in Belarusian children exposed to radiation.

Bmc Cancer
Lonjou, Christine C; Damiola, Francesca F; Moissonnier, Monika M; Durand, Geoffroy G; Malakhova, Irina I; Masyakin, Vladimir V; Le Calvez-Kelm, Florence F; Cardis, Elisabeth E; Byrnes, Graham G; Kesminiene, Ausrele A; Lesueur, Fabienne F
Publication Date: 2017-05-12

Variant appearance in text: rs228589
PubMed Link: 28499365
Variant Present in the following documents:
  • 12885_2017_3314_MOESM1_ESM.xls, sheet 1
View BVdb publication page



Combinations of genetic data in a study of oral cancer.

Genes & Cancer
Mellerup, Erling E; Moeller, Gert Lykke GL; Mondal, Pinaki P; Roychoudhury, Susanta S
Publication Date: 2015-09

Variant appearance in text: rs228589
PubMed Link: 26622944
Variant Present in the following documents:
  • Main text
View BVdb publication page



Generation of a High Number of Healthy Erythroid Cells from Gene-Edited Pyruvate Kinase Deficiency Patient-Specific Induced Pluripotent Stem Cells.

Stem Cell Reports
Garate, Zita Z; Quintana-Bustamante, Oscar O; Crane, Ana M AM; Olivier, Emmanuel E; Poirot, Laurent L; Galetto, Roman R; Kosinski, Penelope P; Hill, Collin C; Kung, Charles C; Agirre, Xabi X; Orman, Israel I; Cerrato, Laura L; Alberquilla, Omaira O; Rodriguez-Fornes, Fatima F; Fusaki, Noemi N; Garcia-Sanchez, Felix F; Maia, Tabita M TM; Ribeiro, Maria L ML; Sevilla, Julian J; Prosper, Felipe F; Jin, Shengfang S; Mountford, Joanne J; Guenechea, Guillermo G; Gouble, Agnes A; Bueren, Juan A JA; Davis, Brian R BR; Segovia, Jose C JC
Publication Date: 2015-12-08

Variant appearance in text: rs228589
PubMed Link: 26549847
Variant Present in the following documents:
  • mmc3.xlsx, sheet 3
  • mmc3.xlsx, sheet 1
  • mmc3.xlsx, sheet 2
View BVdb publication page



Genome stability pathways in head and neck cancers.

International Journal Of Genomics
Jenkins, Glenn G; O'Byrne, Kenneth J KJ; Panizza, Benedict B; Richard, Derek J DJ
Publication Date: 2013

Variant appearance in text: rs228589
PubMed Link: 24364026
Variant Present in the following documents:
  • Main text
  • IJG2013-464720.pdf
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Hereditary breast cancer in the Han Chinese population.

Journal Of Epidemiology
Cao, Wenming W; Wang, Xiaojia X; Li, Ji-Cheng JC
Publication Date: 2013

Variant appearance in text: rs228589
PubMed Link: 23318652
Variant Present in the following documents:
  • Main text
  • je-23-075.pdf
View BVdb publication page



Functional variations in the ATM gene and susceptibility to differentiated thyroid carcinoma.

The Journal Of Clinical Endocrinology And Metabolism
Xu, Li L; Morari, Elaine Cristina EC; Wei, Qingyi Q; Sturgis, Erich M EM; Ward, Laura S LS
Publication Date: 2012-06

Variant appearance in text: rs228589
PubMed Link: 22438227
Variant Present in the following documents:
  • Main text
View BVdb publication page



Low expression levels of ATM may substitute for CHEK2 /TP53 mutations predicting resistance towards anthracycline and mitomycin chemotherapy in breast cancer.

Breast Cancer Research : Bcr
Knappskog, Stian S; Chrisanthar, Ranjan R; Løkkevik, Erik E; Anker, Gun G; Østenstad, Bjørn B; Lundgren, Steinar S; Risberg, Terje T; Mjaaland, Ingvil I; Leirvaag, Beryl B; Miletic, Hrvoje H; Lønning, Per E PE
Publication Date: 2012-03-15

Variant appearance in text: rs228589
PubMed Link: 22420423
Variant Present in the following documents:
  • Main text
  • bcr3147.pdf
View BVdb publication page



Common variants near ATM are associated with glycemic response to metformin in type 2 diabetes.

Nature Genetics
, ; , ; Zhou, Kaixin K; Bellenguez, Celine C; Spencer, Chris C A CC; Bennett, Amanda J AJ; Coleman, Ruth L RL; Tavendale, Roger R; Hawley, Simon A SA; Donnelly, Louise A LA; Schofield, Chris C; Groves, Christopher J CJ; Burch, Lindsay L; Carr, Fiona F; Strange, Amy A; Freeman, Colin C; Blackwell, Jenefer M JM; Bramon, Elvira E; Brown, Matthew A MA; Casas, Juan P JP; Corvin, Aiden A; Craddock, Nicholas N; Deloukas, Panos P; Dronov, Serge S; Duncanson, Audrey A; Edkins, Sarah S; Gray, Emma E; Hunt, Sarah S; Jankowski, Janusz J; Langford, Cordelia C; Markus, Hugh S HS; Mathew, Christopher G CG; Plomin, Robert R; Rautanen, Anna A; Sawcer, Stephen J SJ; Samani, Nilesh J NJ; Trembath, Richard R; Viswanathan, Ananth C AC; Wood, Nicholas W NW; , ; Harries, Lorna W LW; Hattersley, Andrew T AT; Doney, Alex S F AS; Colhoun, Helen H; Morris, Andrew D AD; Sutherland, Calum C; Hardie, D Grahame DG; Peltonen, Leena L; McCarthy, Mark I MI; Holman, Rury R RR; Palmer, Colin N A CN; Donnelly, Peter P; Pearson, Ewan R ER
Publication Date: 2011-02

Variant appearance in text: rs228589
PubMed Link: 21186350
Variant Present in the following documents:
  • Main text
  • NIHMS33681-supplement-1.pdf
  • ukmss-33681.pdf
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ATM sequence variants associate with susceptibility to non-small cell lung cancer.

International Journal Of Cancer
Yang, Hushan H; Spitz, Margaret R MR; Stewart, David J DJ; Lu, Charles C; Gorlov, Ivan P IP; Wu, Xifeng X
Publication Date: 2007-11-15

Variant appearance in text: rs228589
PubMed Link: 17582598
Variant Present in the following documents:
  • Main text
View BVdb publication page



ATM haplotypes and breast cancer risk in Jewish high-risk women.

British Journal Of Cancer
Koren, M M; Kimmel, G G; Ben-Asher, E E; Gal, I I; Papa, M Z MZ; Beckmann, J S JS; Lancet, D D; Shamir, R R; Friedman, E E
Publication Date: 2006-05-22

Variant appearance in text: rs228589
PubMed Link: 16622469
Variant Present in the following documents:
  • Main text
  • 94-6603062a.pdf
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Characterization of the linkage disequilibrium structure and identification of tagging-SNPs in five DNA repair genes.

Bmc Cancer
Allen-Brady, Kristina K; Camp, Nicola J NJ
Publication Date: 2005-08-09

Variant appearance in text: rs228589
PubMed Link: 16091150
Variant Present in the following documents:
  • Main text
  • 1471-2407-5-99.pdf
View BVdb publication page



Haplotype and linkage disequilibrium architecture for human cancer-associated genes.

Genome Research
Bonnen, Penelope E PE; Wang, Peggy J PJ; Kimmel, Marek M; Chakraborty, Ranajit R; Nelson, David L DL
Publication Date: 2002-12

Variant appearance in text: rs228589
PubMed Link: 12466288
Variant Present in the following documents:
  • Main text
View BVdb publication page