Publications:

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Quantitative Proteomics and Network Analysis of Differentially Expressed Proteins in Proteomes of Icefish Muscle Mitochondria Compared with Closely Related Red-Blooded Species.

Biology

Katyal, Gunjan G; Ebanks, Brad B; Dowle, Adam A; Shephard, Freya F; Papetti, Chiara C; Lucassen, Magnus M; Chakrabarti, Lisa L

Publication Date: 2022-07-26

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PubMed Link: 35892974

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• biology-11-01118.pdf

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Combined FGFR and Akt pathway inhibition abrogates growth of FGFR1 overexpressing EGFR-TKI-resistant NSCLC cells.

Npj Precision Oncology

Terp, Mikkel G MG; Jacobsen, Kirstine K; Molina, Miguel Angel MA; Karachaliou, Niki N; Beck, Hans C HC; Bertran-Alamillo, Jordi J; Giménez-Capitán, Ana A; Cardona, Andrés F AF; Rosell, Rafael R; Ditzel, Henrik J HJ

Publication Date: 2021-07-15

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PubMed Link: 34267282

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• 41698_2021_208_MOESM1_ESM.pdf

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SFRP2 induces a mesenchymal subtype transition by suppression of SOX2 in glioblastoma.

Oncogene

Guo, Min M; Goudarzi, Kaveh M KM; Abedi, Shiva S; Pieber, Melanie M; Sjöberg, Elin E; Behnan, Jinan J; Zhang, Xing-Mei XM; Harris, Robert A RA; Bartek, Jiri J; Lindström, Mikael S MS; Nistér, Monica M; Hägerstrand, Daniel D

Publication Date: 2021-08

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PubMed Link: 34021259

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• 41388_2021_1825_MOESM2_ESM.pdf

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FoxP3-miR-150-5p/3p suppresses ovarian tumorigenesis via an IGF1R/IRS1 pathway feedback loop.

Cell Death & Disease

Zhang, Qinkai Q; Zhou, Xunzhu X; Wan, Maoping M; Zeng, Xixi X; Luo, Jiarong J; Xu, Yesha Y; Ji, Liying L; Zhang, Jian-An JA; Fan, Pei P; Zhong, Jianing J; Wu, Jianmin J

Publication Date: 2021-03-15

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PubMed Link: 33723215

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• 41419_2021_3554_MOESM12_ESM.pdf

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Multi-organ proteomic landscape of COVID-19 autopsies.

Cell

Nie, Xiu X; Qian, Liujia L; Sun, Rui R; Huang, Bo B; Dong, Xiaochuan X; Xiao, Qi Q; Zhang, Qiushi Q; Lu, Tian T; Yue, Liang L; Chen, Shuo S; Li, Xiang X; Sun, Yaoting Y; Li, Lu L; Xu, Luang L; Li, Yan Y; Yang, Ming M; Xue, Zhangzhi Z; Liang, Shuang S; Ding, Xuan X; Yuan, Chunhui C; Peng, Li L; Liu, Wei W; Yi, Xiao X; Lyu, Mengge M; Xiao, Guixiang G; Xu, Xia X; Ge, Weigang W; He, Jiale J; Fan, Jun J; Wu, Junhua J; Luo, Meng M; Chang, Xiaona X; Pan, Huaxiong H; Cai, Xue X; Zhou, Junjie J; Yu, Jing J; Gao, Huanhuan H; Xie, Mingxing M; Wang, Sihua S; Ruan, Guan G; Chen, Hao H; Su, Hua H; Mei, Heng H; Luo, Danju D; Zhao, Dashi D; Xu, Fei F; Li, Yan Y; Zhu, Yi Y; Xia, Jiahong J; Hu, Yu Y; Guo, Tiannan T

Publication Date: 2021-02-04

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PubMed Link: 33503446

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• main.pdf

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Effects of dietary n-3-PUFA supplementation, post-insemination plane of nutrition and pregnancy status on the endometrial transcriptome of beef heifers.

Scientific Reports

Surlis, Carla C; Cormican, Paul P; Waters, Sinead M SM; Lonergan, Patrick P; Keogh, Kate K; Doyle, David N DN; Kenny, David A DA

Publication Date: 2020-11-27

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PubMed Link: 33247230

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• 41598_2020_77604_MOESM1_ESM.pdf

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Effect of Enzymatically Extracted Fucoidans on Angiogenesis and Osteogenesis in Primary Cell Culture Systems Mimicking Bone Tissue Environment.

Marine Drugs

Ohmes, Julia J; Xiao, Yuejun Y; Wang, Fanlu F; Mikkelsen, Maria Dalgaard MD; Nguyen, Thuan Thi TT; Schmidt, Harald H; Seekamp, Andreas A; Meyer, Anne S AS; Fuchs, Sabine S

Publication Date: 2020-09-21

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PubMed Link: 32967359

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• marinedrugs-18-00481.pdf

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EPA and DHA Fatty Acids Induce a Remodeling of Tumor Vasculature and Potentiate Docetaxel Activity.

International Journal Of Molecular Sciences

Goupille, Caroline C; Vibet, Sophie S; Frank, Philippe G PG; Mahéo, Karine K

Publication Date: 2020-07-14

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PubMed Link: 32674321

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• ijms-21-04965-s001.pdf

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Multiple links between 5-methylcytosine content of mRNA and translation.

Bmc Biology

Schumann, Ulrike U; Zhang, He-Na HN; Sibbritt, Tennille T; Pan, Anyu A; Horvath, Attila A; Gross, Simon S; Clark, Susan J SJ; Yang, Li L; Preiss, Thomas T

Publication Date: 2020-04-15

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PubMed Link: 32293435

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Variations of circulating miRNA in paediatric patients with Heart Failure supported with Ventricular Assist Device: a pilot study.

Scientific Reports

Ragusa, Rosetta R; Di Molfetta, Arianna A; D'Aurizio, Romina R; Del Turco, Serena S; Cabiati, Manuela M; Del Ry, Silvia S; Basta, Giuseppina G; Pitto, Letizia L; Amodeo, Antonio A; Trivella, Maria Giovanna MG; Rizzo, Milena M; Caselli, Chiara C

Publication Date: 2020-04-03

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PubMed Link: 32246041

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• 41598_2020_Article_62757.pdf

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Differential expression profile study and gene function analysis of maternal foetal-derived circRNA for screening for Down's syndrome.

Experimental And Therapeutic Medicine

Sui, Weiguo W; Gan, Qing Q; Chang, Yan Y; Ou, Minglin M; Chen, Jiejing J; Lin, Hua H; Xue, Wen W; Wu, Yan Y; He, Huiyan H; Tang, Donge D; Dai, Yong Y

Publication Date: 2020-02

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PubMed Link: 32010263

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• Supplementary_Data2.pdf

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Distinct Origin of Claudin7 in Early Tumor Endosomes Affects Exosome Assembly.

International Journal Of Biological Sciences

Kyuno, Daisuke D; Bauer, Nathalie N; Schnölzer, Martina M; Provaznik, Jan J; Ryschich, Eduard E; Hackert, Thilo T; Zöller, Margot M

Publication Date: 2019

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PubMed Link: 31592143

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• ijbsv15p2224s1.pdf

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iPSC-derived homogeneous populations of developing schizophrenia cortical interneurons have compromised mitochondrial function.

Molecular Psychiatry

Ni, Peiyan P; Noh, Haneul H; Park, Gun-Hoo GH; Shao, Zhicheng Z; Guan, Youxin Y; Park, James M JM; Yu, Sophy S; Park, Joy S JS; Coyle, Joseph T JT; Weinberger, Daniel R DR; Straub, Richard E RE; Cohen, Bruce M BM; McPhie, Donna L DL; Yin, Changhong C; Huang, Weihua W; Kim, Hae-Young HY; Chung, Sangmi S

Publication Date: 2020-11

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PubMed Link: 31019265

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• NIHMS1526297-supplement-2.pdf

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Auditory midbrain coding of statistical learning that results from discontinuous sensory stimulation.

Plos Biology

Cruces-Solís, Hugo H; Jing, Zhizi Z; Babaev, Olga O; Rubin, Jonathan J; Gür, Burak B; Krueger-Burg, Dilja D; Strenzke, Nicola N; de Hoz, Livia L

Publication Date: 2018-07

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PubMed Link: 30048446

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• pbio.2005114.pdf

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Hif1a inactivation rescues photoreceptor degeneration induced by a chronic hypoxia-like stress.

Cell Death And Differentiation

Barben, Maya M; Ail, Divya D; Storti, Federica F; Klee, Katrin K; Schori, Christian C; Samardzija, Marijana M; Michalakis, Stylianos S; Biel, Martin M; Meneau, Isabelle I; Blaser, Frank F; Barthelmes, Daniel D; Grimm, Christian C

Publication Date: 2018-12

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PubMed Link: 29666476

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• 41418_2018_94_MOESM3_ESM.pdf

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Quantitative proteomic profiling of primary cancer-associated fibroblasts in oesophageal adenocarcinoma.

British Journal Of Cancer

Manousopoulou, Antigoni A; Hayden, Annette A; Mellone, Massimiliano M; Garay-Baquero, Diana J DJ; White, Cory H CH; Noble, Fergus F; Lopez, Monette M; Thomas, Gareth J GJ; Underwood, Timothy J TJ; Garbis, Spiros D SD

Publication Date: 2018-05

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PubMed Link: 29593339

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• 41416_2018_42_MOESM1_ESM.pdf

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Mechanistic insight into TRIP13-catalyzed Mad2 structural transition and spindle checkpoint silencing.

Nature Communications

Brulotte, Melissa L ML; Jeong, Byung-Cheon BC; Li, Faxiang F; Li, Bing B; Yu, Eric B EB; Wu, Qiong Q; Brautigam, Chad A CA; Yu, Hongtao H; Luo, Xuelian X

Publication Date: 2017-12-05

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PubMed Link: 29208896

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• 41467_2017_Article_2012.pdf

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Sex-Dependent Influence of Developmental Toxicant Exposure on Group B Streptococcus-Mediated Preterm Birth in a Murine Model.

Reproductive Sciences (Thousand Oaks, Calif.)

Ding, Tianbing T; Lambert, Lauren A LA; Aronoff, David M DM; Osteen, Kevin G KG; Bruner-Tran, Kaylon L KL

Publication Date: 2018-05

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PubMed Link: 29153057

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• Main text

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HUWE1 is a critical colonic tumour suppressor gene that prevents MYC signalling, DNA damage accumulation and tumour initiation.

Embo Molecular Medicine

Myant, Kevin B KB; Cammareri, Patrizia P; Hodder, Michael C MC; Wills, Jimi J; Von Kriegsheim, Alex A; Győrffy, Balázs B; Rashid, Mamun M; Polo, Simona S; Maspero, Elena E; Vaughan, Lynsey L; Gurung, Basanta B; Barry, Evan E; Malliri, Angeliki A; Camargo, Fernando F; Adams, David J DJ; Iavarone, Antonio A; Lasorella, Anna A; Sansom, Owen J OJ

Publication Date: 2017-02

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PubMed Link: 28003334

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• EMMM-9-181-s001.pdf

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Comparative growth of spotted fever group Rickettsia spp. strains in Vero cells.

Memorias Do Instituto Oswaldo Cruz

Silva, Arannadia Barbosa AB; Duarte, Myrian Morato MM; Vizzoni, Vinicius Figueiredo VF; Duré, Ana Íris de Lima AÍ; Lopéz, Diego Montenegro DM; Nogueira, Rita de Maria Seabra Rde M; Soares, Carlos Augusto Gomes CA; Machado-Ferreira, Erik E; Gazêta, Gilberto Salles GS

Publication Date: 2016-08

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PubMed Link: 27508322

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Proteomic profiling of cellular steatosis with concomitant oxidative stress in vitro.

Lipids In Health And Disease

Lockman, Khalida Ann KA; Htun, Varanand V; Sinha, Rohit R; Treskes, Philipp P; Nelson, Leonard J LJ; Martin, Sarah F SF; Rogers, Sophie M SM; Le Bihan, Thierry T; Hayes, Peter C PC; Plevris, John N JN

Publication Date: 2016-07-02

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PubMed Link: 27368608

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• Main text
• 12944_2016_Article_283.pdf

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Novel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticity.

Nature Communications

Zhang, Peisu P; Abdelmohsen, Kotb K; Liu, Yong Y; Tominaga-Yamanaka, Kumiko K; Yoon, Je-Hyun JH; Ioannis, Grammatikakis G; Martindale, Jennifer L JL; Zhang, Yongqing Y; Becker, Kevin G KG; Yang, In Hong IH; Gorospe, Myriam M; Mattson, Mark P MP

Publication Date: 2015-11-20

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PubMed Link: 26586091

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• ncomms9888-s1.pdf

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Transient laminin beta 1a Induction Defines the Wound Epidermis during Zebrafish Fin Regeneration.

Plos Genetics

Chen, Chen-Hui CH; Merriman, Alexander F AF; Savage, Jeremiah J; Willer, Jason J; Wahlig, Taylor T; Katsanis, Nicholas N; Yin, Viravuth P VP; Poss, Kenneth D KD

Publication Date: 2015-08

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PubMed Link: 26305099

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Gene co-expression network analysis provides novel insights into myostatin regulation at three different mouse developmental timepoints.

Plos One

Yang, Xuerong X; Koltes, James E JE; Park, Carissa A CA; Chen, Daiwen D; Reecy, James M JM

Publication Date: 2015

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PubMed Link: 25695797

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• pone.0117607.pdf

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Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity.

Plos One

Börsch-Haubold, Angelika G AG; Montero, Inka I; Konrad, Kathryn K; Haubold, Bernhard B

Publication Date: 2014

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PubMed Link: 24849289

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Flow-mediated plasticity in the expression of stickleback nesting glue genes.

Ecology And Evolution

Seear, Paul J PJ; Head, Megan L ML; Tilley, Ceinwen A CA; Rosato, Ezio E; Barber, Iain I

Publication Date: 2014-04

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PubMed Link: 24834322

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• Main text
• ece30004-1233.pdf

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DSSylation, a novel protein modification targets proteins induced by oxidative stress, and facilitates their degradation in cells.

Protein & Cell

Zhang, Yinghao Y; Chang, Fang-Mei FM; Huang, Jianjun J; Junco, Jacob J JJ; Maffi, Shivani K SK; Pridgen, Hannah I HI; Catano, Gabriel G; Dang, Hong H; Ding, Xiang X; Yang, Fuquan F; Kim, Dae Joon DJ; Slaga, Thomas J TJ; He, Rongqiao R; Wei, Sung-Jen SJ

Publication Date: 2014-02

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PubMed Link: 24515614

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• 13238_2013_Article_18.pdf

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Identification of disease specific pathways using in vivo SILAC proteomics in dystrophin deficient mdx mouse.

Molecular & Cellular Proteomics : Mcp

Rayavarapu, Sree S; Coley, William W; Cakir, Erdinc E; Jahnke, Vanessa V; Takeda, Shin'ichi S; Aoki, Yoshitsugu Y; Grodish-Dressman, Heather H; Jaiswal, Jyoti K JK; Hoffman, Eric P EP; Brown, Kristy J KJ; Hathout, Yetrib Y; Nagaraju, Kanneboyina K

Publication Date: 2013-05

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PubMed Link: 23297347

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Expression pattern of oxidative stress and antioxidant defense-related genes in the aging Fischer 344/NHsd rat cochlea.

Neurobiology Of Aging

Tanaka, Chiemi C; Coling, Donald E DE; Manohar, Senthilvelan S; Chen, Guang-Di GD; Hu, Bo Hua BH; Salvi, Richard R; Henderson, Donald D

Publication Date: 2012-08

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PubMed Link: 22300951

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Exploiting a wheat EST database to assess genetic diversity.

Genetics And Molecular Biology

Karakas, Ozge O; Gurel, Filiz F; Uncuoglu, Ahu Altinkut AA

Publication Date: 2010-10

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PubMed Link: 21637582

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• gmb-33-4-719.pdf

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An estrogen receptor-alpha knock-in mutation provides evidence of ligand-independent signaling and allows modulation of ligand-induced pathways in vivo.

Endocrinology

Sinkevicius, Kerstin W KW; Burdette, Joanna E JE; Woloszyn, Karolina K; Hewitt, Sylvia C SC; Hamilton, Katherine K; Sugg, Sonia L SL; Temple, Karla A KA; Wondisford, Fredric E FE; Korach, Kenneth S KS; Woodruff, Teresa K TK; Greene, Geoffrey L GL

Publication Date: 2008-06

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PubMed Link: 18339713

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Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss).

Bmc Genomics

Salem, Mohamed M; Silverstein, Jeff J; Rexroad, Caird E CE; Yao, Jianbo J

Publication Date: 2007-09-19

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PubMed Link: 17880706

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• 1471-2164-8-328.pdf

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Analysis of prolactin-modulated gene expression profiles during the Nb2 cell cycle using differential screening techniques.

Genome Biology

Bole-Feysot, C C; Perret, E E; Roustan, P P; Bouchard, B B; Kelly, P A PA

Publication Date: 2000

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PubMed Link: 11178248

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