Publications:

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Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa.

Nucleic Acids Research

Wang, Shiyi S; Sotcheff, Stephanea L SL; Gallardo, Christian M CM; Jaworski, Elizabeth E; Torbett, Bruce E BE; Routh, Andrew L AL

Publication Date: 2022-04-22

Variant appearance in text: F2: V82A

PubMed Link: 35018461

Variant Present in the following documents:

• Main text
• gkab1259.pdf

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2022-01-15

Variant appearance in text: F2: V82A

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2021-11-22

Variant appearance in text: F2: V82A

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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Virological failure and antiretroviral resistance among HIV-infected children after five years follow-up in the ANRS 12225-PEDIACAM cohort in Cameroon.

Plos One

Tagnouokam-Ngoupo, Paul Alain PA; Penda, Ida Calixte IC; Tchatchueng Mbougua, Jules Brice JB; Tetang Ndiang, Suzie S; Yuya Septoh, Francis F; Kenne, Angeladine A; Ngallè, Jeannine Eboumbou JE; Jakpou, Sorel S; Ateba Ndongo, Francis F; Warszawski, Josiane J; Faye, Albert A; Tejiokem, Mathurin Cyrille MC; ,

Publication Date: 2021

Variant appearance in text: F2: V82A

PubMed Link: 33735301

Variant Present in the following documents:

• Main text
• pone.0248642.pdf

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Prevalence of human immunodeficiency virus-1 drug-resistant mutations among adults on first- and second-line antiretroviral therapy in a resource-limited health facility in Busia County, Kenya.

The Pan African Medical Journal

Makwaga, Olipher O; Adhiambo, Maureen M; Mulama, David Hughes DH; Muoma, John J; Adungo, Ferdinard F; Wanjiku, Humphrey H; Ongaya, Asiko A; Maitha, Geoffrey Mutisya GM; Mwau, Matilu M

Publication Date: 2020

Variant appearance in text: F2: V82A

PubMed Link: 33654530

Variant Present in the following documents:

• PAMJ-37-311.pdf

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Clinical Validation of Targeted and Untargeted Metabolomics Testing for Genetic Disorders: A 3 Year Comparative Study.

Scientific Reports

Almontashiri, Naif A M NAM; Zha, Li L; Young, Kim K; Law, Terence T; Kellogg, Mark D MD; Bodamer, Olaf A OA; Peake, Roy W A RWA

Publication Date: 2020-06-10

Variant appearance in text: F2: 245T>C

PubMed Link: 32523032

Variant Present in the following documents:

• 41598_2020_66401_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

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Characterization of HIV-1 genetic diversity and antiretroviral resistance in the state of Maranhão, Northeast Brazil.

Plos One

Leal, Élcio É; Arrais, Claudia Regina CR; Barreiros, Marta M; Farias Rodrigues, Jessyca Kalynne JK; Silva Sousa, Nilviane Pires NP; Duarte Costa, Daniel D; Rodrigo Pereira Santos, Francisco Dimitre FD; Dantas Silva, Antonio A; Silva Viana, Antonia Iracilda E AIE; Barros, Allan Kardec AK; Lima, Kledoaldo K

Publication Date: 2020

Variant appearance in text: F2: V82A

PubMed Link: 32218587

Variant Present in the following documents:

• Main text
• pone.0230878.pdf

View BVdb publication page

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Analysis of HIV-1 diversity, primary drug resistance and transmission networks in Croatia.

Scientific Reports

Oroz, Maja M; Begovac, Josip J; Planinić, Ana A; Rokić, Filip F; Lunar, Maja M MM; Zorec, Tomaž Mark TM; Beluzić, Robert R; Korać, Petra P; Vugrek, Oliver O; Poljak, Mario M; Lepej, Snježana Židovec SŽ

Publication Date: 2019-11-21

Variant appearance in text: F2: V82A

PubMed Link: 31754119

Variant Present in the following documents:

• Main text
• 41598_2019_Article_53520.pdf

View BVdb publication page

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GRL-079, a Novel HIV-1 Protease Inhibitor, Is Extremely Potent against Multidrug-Resistant HIV-1 Variants and Has a High Genetic Barrier against the Emergence of Resistant Variants.

Antimicrobial Agents And Chemotherapy

Delino, Nicole S NS; Aoki, Manabu M; Hayashi, Hironori H; Hattori, Shin-Ichiro SI; Chang, Simon B SB; Takamatsu, Yuki Y; Martyr, Cuthbert D CD; Das, Debananda D; Ghosh, Arun K AK; Mitsuya, Hiroaki H

Publication Date: 2018-05

Variant appearance in text: F2: V82A

PubMed Link: 29463535

Variant Present in the following documents:

• Main text

View BVdb publication page

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A Modified P1 Moiety Enhances In Vitro Antiviral Activity against Various Multidrug-Resistant HIV-1 Variants and In Vitro Central Nervous System Penetration Properties of a Novel Nonpeptidic Protease Inhibitor, GRL-10413.

Antimicrobial Agents And Chemotherapy

Amano, Masayuki M; Salcedo-Gómez, Pedro Miguel PM; Zhao, Rui R; Yedidi, Ravikiran S RS; Das, Debananda D; Bulut, Haydar H; Delino, Nicole S NS; Sheri, Venkata Reddy VR; Ghosh, Arun K AK; Mitsuya, Hiroaki H

Publication Date: 2016-12

Variant appearance in text: F2: V82A

PubMed Link: 27620483

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genetic Characterization of a Panel of Diverse HIV-1 Isolates at Seven International Sites.

Plos One

Hora, Bhavna B; Keating, Sheila M SM; Chen, Yue Y; Sanchez, Ana M AM; Sabino, Ester E; Hunt, Gillian G; Ledwaba, Johanna J; Hackett, John J; Swanson, Priscilla P; Hewlett, Indira I; Ragupathy, Viswanath V; Vikram Vemula, Sai S; Zeng, Peibin P; Tee, Kok-Keng KK; Chow, Wei Zhen WZ; Ji, Hezhao H; Sandstrom, Paul P; Denny, Thomas N TN; Busch, Michael P MP; Gao, Feng F; ,

Publication Date: 2016

Variant appearance in text: F2: V82A

PubMed Link: 27314585

Variant Present in the following documents:

• Main text
• pone.0157340.pdf

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HIV-1 Transmitted Drug Resistance Mutations in Newly Diagnosed Antiretroviral-Naive Patients in Turkey.

Aids Research And Human Retroviruses

Sayan, Murat M; Sargin, Fatma F; Inan, Dilara D; Sevgi, Dilek Y DY; Celikbas, Aysel K AK; Yasar, Kadriye K; Kaptan, Figen F; Kutlu, Selda S; Fisgin, Nuriye T NT; Inci, Ayse A; Ceran, Nurgul N; Karaoglan, Ilkay I; Cagatay, Atahan A; Celen, Mustafa K MK; Koruk, Suda T ST; Ceylan, Bahadir B; Yildirmak, Taner T; Akalın, Halis H; Korten, Volkan V; Willke, Ayse A

Publication Date: 2016-01

Variant appearance in text: F2: V82A

PubMed Link: 26414663

Variant Present in the following documents:

• Main text

View BVdb publication page

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Antiretroviral treatment outcome in HIV-1-infected patients routinely followed up in capital cities and remote areas of Senegal, Mali and Guinea-Conakry.

Journal Of The International Aids Society

Diouara, Abou Abdallah Malick AA; Ndiaye, Halimatou Diop HD; Guindo, Ibrehima I; Bangoura, Nestor N; Cissé, Mohamed M; Edmond, Tchiakpe T; Bougoudogo, Flabou F; Mboup, Souleymame S; Peeters, Martine M; Ayouba, Ahidjo A; Kane, Ndèye Coumba Touré NC

Publication Date: 2014

Variant appearance in text: F2: V82A

PubMed Link: 25527333

Variant Present in the following documents:

• Main text
• JIAS-17-19315.pdf

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Phenotypic characterization of virological failure following lopinavir/ritonavir monotherapy using full-length Gag-protease genes.

The Journal Of Antimicrobial Chemotherapy

Sutherland, Katherine A KA; Mbisa, Jean L JL; Ghosn, Jade J; Chaix, Marie-Laure ML; Cohen-Codar, Isabelle I; Hue, Stephane S; Delfraissy, Jean-Francois JF; Delaugerre, Constance C; Gupta, Ravindra K RK

Publication Date: 2014-12

Variant appearance in text: F2: V82A

PubMed Link: 25096075

Variant Present in the following documents:

• Main text
• dku296.pdf

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GRL-04810 and GRL-05010, difluoride-containing nonpeptidic HIV-1 protease inhibitors (PIs) that inhibit the replication of multi-PI-resistant HIV-1 in vitro and possess favorable lipophilicity that may allow blood-brain barrier penetration.

Antimicrobial Agents And Chemotherapy

Salcedo Gómez, Pedro Miguel PM; Amano, Masayuki M; Yashchuk, Sofiya S; Mizuno, Akira A; Das, Debananda D; Ghosh, Arun K AK; Mitsuya, Hiroaki H

Publication Date: 2013-12

Variant appearance in text: F2: V82A

PubMed Link: 24080647

Variant Present in the following documents:

• Main text

View BVdb publication page

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Transmitted antiretroviral drug resistance in newly HIV-infected and untreated patients in Ségou and Bamako, Mali.

Aids Research And Human Retroviruses

Maiga, Almoustapha Issiaka AI; Fofana, Djeneba Bocar DB; Maiga, Aichatou Chehy AC; Diallo, Fodie F; Ait-Arkoub, Zaina Z; Daou, Fatoumata F; Cisse, Mamadou M; Sarro, Yaya Dit Sadio YD; Oumar, Aboubacar Alassane AA; Sylla, Aliou A; Katlama, Christine C; Taiwo, Babafemi B; Murphy, Robert R; Tounkara, Anatole A; Marcelin, Anne-Genevieve AG; Calvez, Vincent V

Publication Date: 2013-01

Variant appearance in text: F2: V82A

PubMed Link: 22823755

Variant Present in the following documents:

• Main text

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Correlation between resistance profile and immunosuppression in heavily treated HIV-1 infected Romanian patients.

Romanian Biotechnological Letters

Manolescu, Loredana L; Temereanca, Aura A; Diaconu, Carmen Cristina CC; Ruta, Simona S

Publication Date: 2011-08

Variant appearance in text: F2: V82A

PubMed Link: 22180722

Variant Present in the following documents:

• Main text

View BVdb publication page

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Characterization of partial and near full-length genomes of HIV-1 strains sampled from recently infected individuals in São Paulo, Brazil.

Plos One

Sanabani, Sabri Saeed SS; Pastena, Évelyn Regina de Souza ÉR; da Costa, Antonio Charlys AC; Martinez, Vanessa Pouza VP; Kleine-Neto, Walter W; de Oliveira, Ana Carolina Soares AC; Sauer, Mariana Melillo MM; Bassichetto, Katia Cristina KC; Oliveira, Solange Maria Santos SM; Tomiyama, Helena Tomoko Iwashita HT; Sabino, Ester Cerdeira EC; Kallas, Esper Georges EG

Publication Date: 2011

Variant appearance in text: F2: V82A

PubMed Link: 22022460

Variant Present in the following documents:

• Main text
• pone.0025869.pdf

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Efficient identification of human immunodeficiency virus type 1 mutants resistant to a protease inhibitor by using a random mutant library.

Antimicrobial Agents And Chemotherapy

Kim, Sanggu S; Kim, Yun-Cheol YC; Qi, Hangfei H; Su, Kunkai K; Morrison, Sherie L SL; Chow, Samson A SA

Publication Date: 2011-11

Variant appearance in text: F2: V82A

PubMed Link: 21876045

Variant Present in the following documents:

• Main text

View BVdb publication page

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Accessory mutations maintain stability in drug-resistant HIV-1 protease.

Journal Of Molecular Biology

Chang, Max W MW; Torbett, Bruce E BE

Publication Date: 2011-07-22

Variant appearance in text: F2: V82A

PubMed Link: 21762813

Variant Present in the following documents:

• Main text

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Drug resistance mutation profile and accumulation kinetics in human immunodeficiency virus-positive individuals infected with subtypes B and F failing highly active antiretroviral therapy are influenced by different viral codon usage patterns.

Antimicrobial Agents And Chemotherapy

Waléria-Aleixo, A A; Martins, A N AN; Arruda, M B MB; Brindeiro, R M RM; Da-Silva, R M RM; Nobre, F F FF; Greco, D B DB; Tanuri, A A

Publication Date: 2008-12

Variant appearance in text: F2: V82A

PubMed Link: 18838582

Variant Present in the following documents:

• Main text

View BVdb publication page

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Antiretroviral drug resistance and routine therapy, Cameroon.

Emerging Infectious Diseases

Laurent, Christian C; Kouanfack, Charles C; Vergne, Laurence L; Tardy, Michèle M; Zekeng, Léopold L; Noumsi, Nathalie N; Butel, Christelle C; Bourgeois, Anke A; Mpoudi-Ngolé, Eitel E; Koulla-Shiro, Sinata S; Peeters, Martine M; Delaporte, Eric E

Publication Date: 2006-06

Variant appearance in text: F2: V82A

PubMed Link: 16707062

Variant Present in the following documents:

• Main text
• 05-0860.pdf

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Diversity of human immunodeficiency virus type 1 subtype A and CRF03_AB protease in Eastern Europe: selection of the V77I variant and its rapid spread in injecting drug user populations.

Journal Of Virology

Roudinskii, Nikita I NI; Sukhanova, Anna L AL; Kazennova, Elena V EV; Weber, Jonathan N JN; Pokrovsky, Vadim V VV; Mikhailovich, Vladimir M VM; Bobkov, Aleksei F AF

Publication Date: 2004-10

Variant appearance in text: F2: V82A

PubMed Link: 15452247

Variant Present in the following documents:

• Main text

View BVdb publication page

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Human immunodeficiency virus type 1 reverse-transcriptase and protease subtypes: classification, amino acid mutation patterns, and prevalence in a northern California clinic-based population.

The Journal Of Infectious Diseases

Gonzales, M J MJ; Machekano, R N RN; Shafer, R W RW

Publication Date: 2001-10-15

Variant appearance in text: F2: V82A

PubMed Link: 11574914

Variant Present in the following documents:

• Main text

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Genetic diversity of protease and reverse transcriptase sequences in non-subtype-B human immunodeficiency virus type 1 strains: evidence of many minor drug resistance mutations in treatment-naive patients.

Journal Of Clinical Microbiology

Vergne, L L; Peeters, M M; Mpoudi-Ngole, E E; Bourgeois, A A; Liegeois, F F; Toure-Kane, C C; Mboup, S S; Mulanga-Kabeya, C C; Saman, E E; Jourdan, J J; Reynes, J J; Delaporte, E E

Publication Date: 2000-11

Variant appearance in text: F2: V82A

PubMed Link: 11060045

Variant Present in the following documents:

• Main text

View BVdb publication page

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