CD69 c.65-1149C>T

Variant ID: 12-9910164-G-A

NM_001781.2(CD69):c.65-1149C>T

This variant was identified in 34 publications

View GRCh38 version.




Publications:


Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.

Nature Genetics
Robertson, Catherine C CC; Inshaw, Jamie R J JRJ; Onengut-Gumuscu, Suna S; Chen, Wei-Min WM; Santa Cruz, David Flores DF; Yang, Hanzhi H; Cutler, Antony J AJ; Crouch, Daniel J M DJM; Farber, Emily E; Bridges, S Louis SL; Edberg, Jeffrey C JC; Kimberly, Robert P RP; Buckner, Jane H JH; Deloukas, Panos P; Divers, Jasmin J; Dabelea, Dana D; Lawrence, Jean M JM; Marcovina, Santica S; Shah, Amy S AS; Greenbaum, Carla J CJ; Atkinson, Mark A MA; Gregersen, Peter K PK; Oksenberg, Jorge R JR; Pociot, Flemming F; Rewers, Marian J MJ; Steck, Andrea K AK; Dunger, David B DB; , ; Wicker, Linda S LS; Concannon, Patrick P; Todd, John A JA; Rich, Stephen S SS
Publication Date: 2021-07

Variant appearance in text: rs4763879
PubMed Link: 34127860
Variant Present in the following documents:
  • EMS123940-supplement-Supplementary_Tables.xlsx, sheet 14
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Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.

Nature Genetics
Robertson, Catherine C CC; Inshaw, Jamie R J JRJ; Onengut-Gumuscu, Suna S; Chen, Wei-Min WM; Santa Cruz, David Flores DF; Yang, Hanzhi H; Cutler, Antony J AJ; Crouch, Daniel J M DJM; Farber, Emily E; Bridges, S Louis SL; Edberg, Jeffrey C JC; Kimberly, Robert P RP; Buckner, Jane H JH; Deloukas, Panos P; Divers, Jasmin J; Dabelea, Dana D; Lawrence, Jean M JM; Marcovina, Santica S; Shah, Amy S AS; Greenbaum, Carla J CJ; Atkinson, Mark A MA; Gregersen, Peter K PK; Oksenberg, Jorge R JR; Pociot, Flemming F; Rewers, Marian J MJ; Steck, Andrea K AK; Dunger, David B DB; , ; Wicker, Linda S LS; Concannon, Patrick P; Todd, John A JA; Rich, Stephen S SS
Publication Date: 2021-07

Variant appearance in text: rs4763879
PubMed Link: 34127860
Variant Present in the following documents:
  • EMS123940-supplement-Supplementary_Tables.xlsx, sheet 14
View BVdb publication page



Type 1 diabetes: genes associated with disease development.

Central-European Journal Of Immunology
Klak, Marta M; Gomółka, Magdalena M; Kowalska, Patrycja P; Cichoń, Justyna J; Ambrożkiewicz, Filip F; Serwańska-Świętek, Marta M; Berman, Andrzej A; Wszoła, Michał M
Publication Date: 2020

Variant appearance in text: rs4763879
PubMed Link: 33658892
Variant Present in the following documents:
  • Main text
  • CEJI-45-43203.pdf
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Clinical and genetic correlates of islet-autoimmune signatures in juvenile-onset type 1 diabetes.

Diabetologia
Claessens, Laura A LA; Wesselius, Joris J; van Lummel, Menno M; Laban, Sandra S; Mulder, Flip F; Mul, Dick D; Nikolic, Tanja T; Aanstoot, Henk-Jan HJ; Koeleman, Bobby P C BPC; Roep, Bart O BO
Publication Date: 2020-02

Variant appearance in text: rs4763879
PubMed Link: 31754749
Variant Present in the following documents:
  • 125_2019_Article_5032.pdf
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Identification of infants with increased type 1 diabetes genetic risk for enrollment into Primary Prevention Trials-GPPAD-02 study design and first results.

Pediatric Diabetes
Winkler, Christiane C; Haupt, Florian F; Heigermoser, Martin M; Zapardiel-Gonzalo, Jose J; Ohli, Jasmin J; Faure, Theresa T; Kalideri, Evdokia E; Hommel, Angela A; Delivani, Petrina P; Berner, Reinhard R; Kordonouri, Olga O; Roloff, Frank F; von dem Berge, Thekla T; Lange, Karin K; Oltarzewski, Mariusz M; Glab, Ryszard R; Szypowska, Agnieszka A; Snape, Matthew D MD; Vatish, Manu M; Todd, John A JA; Larsson, Helena E HE; Ramelius, Anita A; Kördel, Jeanette Å JÅ; Casteels, Kristina K; Paulus, Jasmin J; Ziegler, Anette G AG; Bonifacio, Ezio E; ,
Publication Date: 2019-09

Variant appearance in text: rs4763879
PubMed Link: 31192505
Variant Present in the following documents:
  • Main text
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Impact of the Polymorphism of the PACRG and CD80 Genes on the Development of the Different Stages of Tuberculosis Infection.

Iranian Journal Of Medical Sciences
Bragina, Elena Yu EY; Babushkina, Nadezhda P NP; Garaeva, Anna F AF; Rudko, Alexey A AA; Tsitrikov, Dmitry Yu DY; Gomboeva, Densema E DE; Freidin, Maxim B MB
Publication Date: 2019-05

Variant appearance in text: rs4763879
PubMed Link: 31182890
Variant Present in the following documents:
  • Main text
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Risk variants disrupting enhancers of TH1 and TREG cells in type 1 diabetes.

Proceedings Of The National Academy Of Sciences Of The United States Of America
Gao, Peng P; Uzun, Yasin Y; He, Bing B; Salamati, Sarah E SE; Coffey, Julie K M JKM; Tsalikian, Eva E; Tan, Kai K
Publication Date: 2019-04-09

Variant appearance in text: rs4763879
PubMed Link: 30910956
Variant Present in the following documents:
  • Main text
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Genetic Contribution to the Divergence in Type 1 Diabetes Risk Between Children From the General Population and Children From Affected Families.

Diabetes
Hippich, Markus M; Beyerlein, Andreas A; Hagopian, William A WA; Krischer, Jeffrey P JP; Vehik, Kendra K; Knoop, Jan J; Winker, Christiane C; Toppari, Jorma J; Lernmark, Åke Å; Rewers, Marian J MJ; Steck, Andrea K AK; She, Jin-Xiong JX; Akolkar, Beena B; Robertson, Catherine C CC; Onengut-Gumuscu, Suna S; Rich, Stephen S SS; Bonifacio, Ezio E; Ziegler, Anette-G AG; , ; ,
Publication Date: 2019-04

Variant appearance in text: rs4763879
PubMed Link: 30655385
Variant Present in the following documents:
  • DB180882SupplementaryData.pdf
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HLA and non-HLA genes and familial predisposition to autoimmune diseases in families with a child affected by type 1 diabetes.

Plos One
Parkkola, Anna A; Laine, Antti-Pekka AP; Karhunen, Markku M; Härkönen, Taina T; Ryhänen, Samppa J SJ; Ilonen, Jorma J; Knip, Mikael M; ,
Publication Date: 2017

Variant appearance in text: rs4763879
PubMed Link: 29182645
Variant Present in the following documents:
  • Main text
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Isogenic Cellular Systems Model the Impact of Genetic Risk Variants in the Pathogenesis of Type 1 Diabetes.

Frontiers In Endocrinology
Wallet, Mark A MA; Santostefano, Katherine E KE; Terada, Naohiro N; Brusko, Todd M TM
Publication Date: 2017

Variant appearance in text: rs4763879
PubMed Link: 29093700
Variant Present in the following documents:
  • Main text
  • fendo-08-00276.pdf
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Genetic polymorphisms of C-type lectin receptors in Behcet's disease in a Chinese Han population.

Scientific Reports
Yang, Yi Y; Tan, Handan H; Deng, Bolin B; Yu, Hongsong H; Su, Guannan G; Hu, Jiayue J; Cao, Qingfeng Q; Yuan, Gangxiang G; Kijlstra, Aize A; Yang, Peizeng P
Publication Date: 2017-07-13

Variant appearance in text: rs4763879
PubMed Link: 28706259
Variant Present in the following documents:
  • Main text
  • 41598_2017_Article_5877.pdf
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Large-Scale Exome-wide Association Analysis Identifies Loci for White Blood Cell Traits and Pleiotropy with Immune-Mediated Diseases.

American Journal Of Human Genetics
Tajuddin, Salman M SM; Schick, Ursula M UM; Eicher, John D JD; Chami, Nathalie N; Giri, Ayush A; Brody, Jennifer A JA; Hill, W David WD; Kacprowski, Tim T; Li, Jin J; Lyytikäinen, Leo-Pekka LP; Manichaikul, Ani A; Mihailov, Evelin E; O'Donoghue, Michelle L ML; Pankratz, Nathan N; Pazoki, Raha R; Polfus, Linda M LM; Smith, Albert Vernon AV; Schurmann, Claudia C; Vacchi-Suzzi, Caterina C; Waterworth, Dawn M DM; Evangelou, Evangelos E; Yanek, Lisa R LR; Burt, Amber A; Chen, Ming-Huei MH; van Rooij, Frank J A FJ; Floyd, James S JS; Greinacher, Andreas A; Harris, Tamara B TB; Highland, Heather M HM; Lange, Leslie A LA; Liu, Yongmei Y; Mägi, Reedik R; Nalls, Mike A MA; Mathias, Rasika A RA; Nickerson, Deborah A DA; Nikus, Kjell K; Starr, John M JM; Tardif, Jean-Claude JC; Tzoulaki, Ioanna I; Velez Edwards, Digna R DR; Wallentin, Lars L; Bartz, Traci M TM; Becker, Lewis C LC; Denny, Joshua C JC; Raffield, Laura M LM; Rioux, John D JD; Friedrich, Nele N; Fornage, Myriam M; Gao, He H; Hirschhorn, Joel N JN; Liewald, David C M DC; Rich, Stephen S SS; Uitterlinden, Andre A; Bastarache, Lisa L; Becker, Diane M DM; Boerwinkle, Eric E; de Denus, Simon S; Bottinger, Erwin P EP; Hayward, Caroline C; Hofman, Albert A; Homuth, Georg G; Lange, Ethan E; Launer, Lenore J LJ; Lehtimäki, Terho T; Lu, Yingchang Y; Metspalu, Andres A; O'Donnell, Chris J CJ; Quarells, Rakale C RC; Richard, Melissa M; Torstenson, Eric S ES; Taylor, Kent D KD; Vergnaud, Anne-Claire AC; Zonderman, Alan B AB; Crosslin, David R DR; Deary, Ian J IJ; Dörr, Marcus M; Elliott, Paul P; Evans, Michele K MK; Gudnason, Vilmundur V; Kähönen, Mika M; Psaty, Bruce M BM; Rotter, Jerome I JI; Slater, Andrew J AJ; Dehghan, Abbas A; White, Harvey D HD; Ganesh, Santhi K SK; Loos, Ruth J F RJ; Esko, Tõnu T; Faraday, Nauder N; Wilson, James G JG; Cushman, Mary M; Johnson, Andrew D AD; Edwards, Todd L TL; Zakai, Neil A NA; Lettre, Guillaume G; Reiner, Alex P AP; Auer, Paul L PL
Publication Date: 2016-07-07

Variant appearance in text: rs4763879
PubMed Link: 27346689
Variant Present in the following documents:
  • Main text
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ERBB3-rs2292239 as primary type 1 diabetes association locus among non-HLA genes in Chinese.

Meta Gene
Sun, Chengjun C; Wei, Haiyan H; Chen, Xiuli X; Zhao, Zhuhui Z; Du, Hongwei H; Song, Wenhui W; Yang, Yu Y; Zhang, Miaoying M; Lu, Wei W; Pei, Zhou Z; Xi, Li L; Yan, Jian J; Zhi, Dijing D; Cheng, Ruoqian R; Luo, Feihong F
Publication Date: 2016-09

Variant appearance in text: rs4763879
PubMed Link: 27331016
Variant Present in the following documents:
  • Main text
  • main.pdf
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Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation.

American Journal Of Human Genetics
Do, Catherine C; Lang, Charles F CF; Lin, John J; Darbary, Huferesh H; Krupska, Izabela I; Gaba, Aulona A; Petukhova, Lynn L; Vonsattel, Jean-Paul JP; Gallagher, Mary P MP; Goland, Robin S RS; Clynes, Raphael A RA; Dwork, Andrew A; Kral, John G JG; Monk, Catherine C; Christiano, Angela M AM; Tycko, Benjamin B
Publication Date: 2016-05-05

Variant appearance in text: rs4763879
PubMed Link: 27153397
Variant Present in the following documents:
  • Main text
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Systematic Evaluation of Genes and Genetic Variants Associated with Type 1 Diabetes Susceptibility.

Journal Of Immunology (Baltimore, Md. : 1950)
Ram, Ramesh R; Mehta, Munish M; Nguyen, Quang T QT; Larma, Irma I; Boehm, Bernhard O BO; Pociot, Flemming F; Concannon, Patrick P; Morahan, Grant G
Publication Date: 2016-04-01

Variant appearance in text: rs4763879
PubMed Link: 26912320
Variant Present in the following documents:
  • Main text
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Genetic Risk Score Modelling for Disease Progression in New-Onset Type 1 Diabetes Patients: Increased Genetic Load of Islet-Expressed and Cytokine-Regulated Candidate Genes Predicts Poorer Glycemic Control.

Journal Of Diabetes Research
Brorsson, Caroline A CA; Nielsen, Lotte B LB; Andersen, Marie Louise ML; Kaur, Simranjeet S; Bergholdt, Regine R; Hansen, Lars L; Mortensen, Henrik B HB; Pociot, Flemming F; Størling, Joachim J; ,
Publication Date: 2016

Variant appearance in text: rs4763879
PubMed Link: 26904692
Variant Present in the following documents:
  • Main text
  • JDR2016-9570424.pdf
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Non-HLA type 1 diabetes genes modulate disease risk together with HLA-DQ and islet autoantibodies.

Genes And Immunity
Maziarz, M M; Hagopian, W W; Palmer, J P JP; Sanjeevi, C B CB; Kockum, I I; Breslow, N N; Lernmark, Å Å; , ; , ; ,
Publication Date: 2015-12

Variant appearance in text: rs4763879
PubMed Link: 26513234
Variant Present in the following documents:
  • Main text
View BVdb publication page



Shared Genetic Basis for Type 1 Diabetes, Islet Autoantibodies, and Autoantibodies Associated With Other Immune-Mediated Diseases in Families With Type 1 Diabetes.

Diabetes Care
Brorsson, Caroline A CA; Pociot, Flemming F; ,
Publication Date: 2015-10

Variant appearance in text: rs4763879
PubMed Link: 26405073
Variant Present in the following documents:
  • Main text
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Functional annotation of HOT regions in the human genome: implications for human disease and cancer.

Scientific Reports
Li, Hao H; Chen, Hebing H; Liu, Feng F; Ren, Chao C; Wang, Shengqi S; Bo, Xiaochen X; Shu, Wenjie W
Publication Date: 2015-06-26

Variant appearance in text: rs4763879
PubMed Link: 26113264
Variant Present in the following documents:
  • Main text
View BVdb publication page



Natural Selection and Functional Potentials of Human Noncoding Elements Revealed by Analysis of Next Generation Sequencing Data.

Plos One
Jha, Pankaj P; Lu, Dongsheng D; Xu, Shuhua S
Publication Date: 2015

Variant appearance in text: rs4763879
PubMed Link: 26053627
Variant Present in the following documents:
  • Main text
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Genome-wide association study of metabolic syndrome in koreans.

Genomics & Informatics
Jeong, Seok Won SW; Chung, Myungguen M; Park, Soo-Jung SJ; Cho, Seong Beom SB; Hong, Kyung-Won KW
Publication Date: 2014-12

Variant appearance in text: rs4763879
PubMed Link: 25705157
Variant Present in the following documents:
  • gni-12-187-s002.pdf
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Role of Type 1 Diabetes-Associated SNPs on Risk of Autoantibody Positivity in the TEDDY Study.

Diabetes
Törn, Carina C; Hadley, David D; Lee, Hye-Seung HS; Hagopian, William W; Lernmark, Åke Å; Simell, Olli O; Rewers, Marian M; Ziegler, Anette A; Schatz, Desmond D; Akolkar, Beena B; Onengut-Gumuscu, Suna S; Chen, Wei-Min WM; Toppari, Jorma J; Mykkänen, Juha J; Ilonen, Jorma J; Rich, Stephen S SS; She, Jin-Xiong JX; Steck, Andrea K AK; Krischer, Jeffrey J; ,
Publication Date: 2015-05

Variant appearance in text: rs4763879
PubMed Link: 25422107
Variant Present in the following documents:
  • Main text
  • db141497.pdf
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Improving prediction of type 1 diabetes by testing non-HLA genetic variants in addition to HLA markers.

Pediatric Diabetes
Steck, Andrea K AK; Dong, Fran F; Wong, Randall R; Fouts, Alexandra A; Liu, Edwin E; Romanos, Jihane J; Wijmenga, Cisca C; Norris, Jill M JM; Rewers, Marian J MJ
Publication Date: 2014-08

Variant appearance in text: rs4763879
PubMed Link: 25075402
Variant Present in the following documents:
  • Main text
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Sex-specific differences in effect size estimates at established complex trait loci.

International Journal Of Epidemiology
Orozco, Gisela G; Ioannidis, John P A JP; Morris, Andrew A; Zeggini, Eleftheria E; ,
Publication Date: 2012-10

Variant appearance in text: rs4763879
PubMed Link: 22825589
Variant Present in the following documents:
View BVdb publication page



Effects of non-HLA gene polymorphisms on development of islet autoimmunity and type 1 diabetes in a population with high-risk HLA-DR,DQ genotypes.

Diabetes
Steck, Andrea K AK; Wong, Randall R; Wagner, Brandie B; Johnson, Kelly K; Liu, Edwin E; Romanos, Jihane J; Wijmenga, Cisca C; Norris, Jill M JM; Eisenbarth, George S GS; Rewers, Marian J MJ
Publication Date: 2012-03

Variant appearance in text: rs4763879
PubMed Link: 22315323
Variant Present in the following documents:
  • Main text
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Confirmation of novel type 1 diabetes risk loci in families.

Diabetologia
Cooper, J D JD; Howson, J M M JM; Smyth, D D; Walker, N M NM; Stevens, H H; Yang, J H M JH; She, J-X JX; Eisenbarth, G S GS; Rewers, M M; Todd, J A JA; Akolkar, B B; Concannon, P P; Erlich, H A HA; Julier, C C; Morahan, G G; Nerup, J J; Nierras, C C; Pociot, F F; Rich, S S SS; ,
Publication Date: 2012-04

Variant appearance in text: rs4763879
PubMed Link: 22278338
Variant Present in the following documents:
  • Main text
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A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.

Plos Genetics
Bradfield, Jonathan P JP; Qu, Hui-Qi HQ; Wang, Kai K; Zhang, Haitao H; Sleiman, Patrick M PM; Kim, Cecilia E CE; Mentch, Frank D FD; Qiu, Haijun H; Glessner, Joseph T JT; Thomas, Kelly A KA; Frackelton, Edward C EC; Chiavacci, Rosetta M RM; Imielinski, Marcin M; Monos, Dimitri S DS; Pandey, Rahul R; Bakay, Marina M; Grant, Struan F A SF; Polychronakos, Constantin C; Hakonarson, Hakon H
Publication Date: 2011-09

Variant appearance in text: rs4763879
PubMed Link: 21980299
Variant Present in the following documents:
  • Main text
  • pgen.1002293.pdf
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Association between type 1 diabetes and GWAS SNPs in the southeast US Caucasian population.

Genes And Immunity
Reddy, M V Prasad Linga MV; Wang, H H; Liu, S S; Bode, B B; Reed, J C JC; Steed, R D RD; Anderson, S W SW; Steed, L L; Hopkins, D D; She, J-X JX
Publication Date: 2011-04

Variant appearance in text: rs4763879
PubMed Link: 21270831
Variant Present in the following documents:
  • Main text
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Tests for genetic interactions in type 1 diabetes: linkage and stratification analyses of 4,422 affected sib-pairs.

Diabetes
Morahan, Grant G; Mehta, Munish M; James, Ian I; Chen, Wei-Min WM; Akolkar, Beena B; Erlich, Henry A HA; Hilner, Joan E JE; Julier, Cécile C; Nerup, Jørn J; Nierras, Concepcion C; Pociot, Flemming F; Todd, John A JA; Rich, Stephen S SS; ,
Publication Date: 2011-03

Variant appearance in text: rs4763879
PubMed Link: 21266329
Variant Present in the following documents:
  • Main text
View BVdb publication page



Advances and challenges in biomarker development for type 1 diabetes prediction and prevention using omic technologies.

Expert Opinion On Medical Diagnostics
Carey, Colleen C; Purohit, Sharad S; She, Jin-Xiong JX
Publication Date: 2010-09-01

Variant appearance in text: rs4763879
PubMed Link: 20885991
Variant Present in the following documents:
  • Main text
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Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes.

Human Molecular Genetics
Murphy, Amy A; Chu, Jen-Hwa JH; Xu, Mousheng M; Carey, Vincent J VJ; Lazarus, Ross R; Liu, Andy A; Szefler, Stanley J SJ; Strunk, Robert R; Demuth, Karen K; Castro, Mario M; Hansel, Nadia N NN; Diette, Gregory B GB; Vonakis, Becky M BM; Adkinson, N Franklin NF; Klanderman, Barbara J BJ; Senter-Sylvia, Jody J; Ziniti, John J; Lange, Christoph C; Pastinen, Tomi T; Raby, Benjamin A BA
Publication Date: 2010-12-01

Variant appearance in text: rs4763879
PubMed Link: 20833654
Variant Present in the following documents:
  • Main text
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Synthetic associations in the context of genome-wide association scan signals.

Human Molecular Genetics
Orozco, Gisela G; Barrett, Jeffrey C JC; Zeggini, Eleftheria E
Publication Date: 2010-10-15

Variant appearance in text: rs4763879
PubMed Link: 20805105
Variant Present in the following documents:
  • Main text
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Genetics of type 1 diabetes: what's next?

Diabetes
Pociot, Flemming F; Akolkar, Beena B; Concannon, Patrick P; Erlich, Henry A HA; Julier, Cécile C; Morahan, Grant G; Nierras, Concepcion R CR; Todd, John A JA; Rich, Stephen S SS; Nerup, Jørn J
Publication Date: 2010-07

Variant appearance in text: rs4763879
PubMed Link: 20587799
Variant Present in the following documents:
  • Main text
  • zdb1561.pdf
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Prediction and interaction in complex disease genetics: experience in type 1 diabetes.

Plos Genetics
Clayton, David G DG
Publication Date: 2009-07

Variant appearance in text: rs4763879
PubMed Link: 19584936
Variant Present in the following documents:
  • pgen.1000540.s001.pdf
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Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.

Nature Genetics
Barrett, Jeffrey C JC; Clayton, David G DG; Concannon, Patrick P; Akolkar, Beena B; Cooper, Jason D JD; Erlich, Henry A HA; Julier, Cécile C; Morahan, Grant G; Nerup, Jørn J; Nierras, Concepcion C; Plagnol, Vincent V; Pociot, Flemming F; Schuilenburg, Helen H; Smyth, Deborah J DJ; Stevens, Helen H; Todd, John A JA; Walker, Neil M NM; Rich, Stephen S SS; ,
Publication Date: 2009-06

Variant appearance in text: rs4763879
PubMed Link: 19430480
Variant Present in the following documents:
  • Main text
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