Publications:

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A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis.

Nature Communications

Brooks-Warburton, Johanne J; Modos, Dezso D; Sudhakar, Padhmanand P; Madgwick, Matthew M; Thomas, John P JP; Bohar, Balazs B; Fazekas, David D; Zoufir, Azedine A; Kapuy, Orsolya O; Szalay-Beko, Mate M; Verstockt, Bram B; Hall, Lindsay J LJ; Watson, Alastair A; Tremelling, Mark M; Parkes, Miles M; Vermeire, Severine S; Bender, Andreas A; Carding, Simon R SR; Korcsmaros, Tamas T

Publication Date: 2022-04-28

Variant appearance in text: rs7404095

PubMed Link: 35484353

Variant Present in the following documents:

• Main text
• 41467_2022_Article_29998.pdf

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Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs.

Jci Insight

Chen, Xiao-Feng XF; Guo, Ming-Rui MR; Duan, Yuan-Yuan YY; Jiang, Feng F; Wu, Hao H; Dong, Shan-Shan SS; Zhou, Xiao-Rong XR; Thynn, Hlaing Nwe HN; Liu, Cong-Cong CC; Zhang, Lin L; Guo, Yan Y; Yang, Tie-Lin TL

Publication Date: 2020-09-03

Variant appearance in text: rs7404095

PubMed Link: 32879140

Variant Present in the following documents:

• jciinsight-5-136477-s105.xlsx, sheet 5

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Combination treatment with 6-mercaptopurine and allopurinol in HepG2 and HEK293 cells - Effects on gene expression levels and thiopurine metabolism.

Plos One

Haglund, Sofie S; Vikingsson, Svante S; Almer, Sven S; Söderman, Jan J

Publication Date: 2017

Variant appearance in text: rs7404095

PubMed Link: 28278299

Variant Present in the following documents:

• Main text
• pone.0173825.pdf

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Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci.

Clinical And Translational Gastroenterology

Di Narzo, Antonio F AF; Peters, Lauren A LA; Argmann, Carmen C; Stojmirovic, Aleksandar A; Perrigoue, Jacqueline J; Li, Katherine K; Telesco, Shannon S; Kidd, Brian B; Walker, Jennifer J; Dudley, Joel J; Cho, Judy J; Schadt, Eric E EE; Kasarskis, Andrew A; Curran, Mark M; Dobrin, Radu R; Hao, Ke K

Publication Date: 2016-06-23

Variant appearance in text: rs7404095

PubMed Link: 27336838

Variant Present in the following documents:

• Main text
• ctg201634a.pdf

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Genetic variation in IBD: progress, clues to pathogenesis and possible clinical utility.

Expert Review Of Clinical Immunology

Ye, Byong Duk BD; McGovern, Dermot P B DP

Publication Date: 2016-10

Variant appearance in text: rs7404095

PubMed Link: 27156530

Variant Present in the following documents:

• Main text

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Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.

Nature Genetics

Ellinghaus, David D; Jostins, Luke L; Spain, Sarah L SL; Cortes, Adrian A; Bethune, Jörn J; Han, Buhm B; Park, Yu Rang YR; Raychaudhuri, Soumya S; Pouget, Jennie G JG; Hübenthal, Matthias M; Folseraas, Trine T; Wang, Yunpeng Y; Esko, Tonu T; Metspalu, Andres A; Westra, Harm-Jan HJ; Franke, Lude L; Pers, Tune H TH; Weersma, Rinse K RK; Collij, Valerie V; D'Amato, Mauro M; Halfvarson, Jonas J; Jensen, Anders Boeck AB; Lieb, Wolfgang W; Degenhardt, Franziska F; Forstner, Andreas J AJ; Hofmann, Andrea A; , ; , ; , ; , ; , ; Schreiber, Stefan S; Mrowietz, Ulrich U; Juran, Brian D BD; Lazaridis, Konstantinos N KN; Brunak, Søren S; Dale, Anders M AM; Trembath, Richard C RC; Weidinger, Stephan S; Weichenthal, Michael M; Ellinghaus, Eva E; Elder, James T JT; Barker, Jonathan N W N JN; Andreassen, Ole A OA; McGovern, Dermot P DP; Karlsen, Tom H TH; Barrett, Jeffrey C JC; Parkes, Miles M; Brown, Matthew A MA; Franke, Andre A

Publication Date: 2016-05

Variant appearance in text: rs7404095

PubMed Link: 26974007

Variant Present in the following documents:

• NIHMS762030-supplement-1.pdf

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Genetics of Inflammatory Bowel Diseases.

Gastroenterology

McGovern, Dermot P B DP; Kugathasan, Subra S; Cho, Judy H JH

Publication Date: 2015-10

Variant appearance in text: rs7404095

PubMed Link: 26255561

Variant Present in the following documents:

• Main text

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Transcriptomic landscape of lncRNAs in inflammatory bowel disease.

Genome Medicine

Mirza, Aashiq H AH; Berthelsen, Claus Hb CH; Seemann, Stefan E SE; Pan, Xiaoyong X; Frederiksen, Klaus S KS; Vilien, Mogens M; Gorodkin, Jan J; Pociot, Flemming F

Publication Date: 2015

Variant appearance in text: rs7404095

PubMed Link: 25991924

Variant Present in the following documents:

• Main text

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In-silico analysis of inflammatory bowel disease (IBD) GWAS loci to novel connections.

Plos One

Mesbah-Uddin, Md M; Elango, Ramu R; Banaganapalli, Babajan B; Shaik, Noor Ahmad NA; Al-Abbasi, Fahad A FA

Publication Date: 2015

Variant appearance in text: rs7404095

PubMed Link: 25786114

Variant Present in the following documents:

• Main text

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Computational analysis of the LRRK2 interactome.

Peerj

Manzoni, Claudia C; Denny, Paul P; Lovering, Ruth C RC; Lewis, Patrick A PA

Publication Date: 2015

Variant appearance in text: rs7404095

PubMed Link: 25737818

Variant Present in the following documents:

• Main text
• peerj-03-778.pdf

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Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Nature

Jostins, Luke L; Ripke, Stephan S; Weersma, Rinse K RK; Duerr, Richard H RH; McGovern, Dermot P DP; Hui, Ken Y KY; Lee, James C JC; Schumm, L Philip LP; Sharma, Yashoda Y; Anderson, Carl A CA; Essers, Jonah J; Mitrovic, Mitja M; Ning, Kaida K; Cleynen, Isabelle I; Theatre, Emilie E; Spain, Sarah L SL; Raychaudhuri, Soumya S; Goyette, Philippe P; Wei, Zhi Z; Abraham, Clara C; Achkar, Jean-Paul JP; Ahmad, Tariq T; Amininejad, Leila L; Ananthakrishnan, Ashwin N AN; Andersen, Vibeke V; Andrews, Jane M JM; Baidoo, Leonard L; Balschun, Tobias T; Bampton, Peter A PA; Bitton, Alain A; Boucher, Gabrielle G; Brand, Stephan S; Büning, Carsten C; Cohain, Ariella A; Cichon, Sven S; D'Amato, Mauro M; De Jong, Dirk D; Devaney, Kathy L KL; Dubinsky, Marla M; Edwards, Cathryn C; Ellinghaus, David D; Ferguson, Lynnette R LR; Franchimont, Denis D; Fransen, Karin K; Gearry, Richard R; Georges, Michel M; Gieger, Christian C; Glas, Jürgen J; Haritunians, Talin T; Hart, Ailsa A; Hawkey, Chris C; Hedl, Matija M; Hu, Xinli X; Karlsen, Tom H TH; Kupcinskas, Limas L; Kugathasan, Subra S; Latiano, Anna A; Laukens, Debby D; Lawrance, Ian C IC; Lees, Charlie W CW; Louis, Edouard E; Mahy, Gillian G; Mansfield, John J; Morgan, Angharad R AR; Mowat, Craig C; Newman, William W; Palmieri, Orazio O; Ponsioen, Cyriel Y CY; Potocnik, Uros U; Prescott, Natalie J NJ; Regueiro, Miguel M; Rotter, Jerome I JI; Russell, Richard K RK; Sanderson, Jeremy D JD; Sans, Miquel M; Satsangi, Jack J; Schreiber, Stefan S; Simms, Lisa A LA; Sventoraityte, Jurgita J; Targan, Stephan R SR; Taylor, Kent D KD; Tremelling, Mark M; Verspaget, Hein W HW; De Vos, Martine M; Wijmenga, Cisca C; Wilson, David C DC; Winkelmann, Juliane J; Xavier, Ramnik J RJ; Zeissig, Sebastian S; Zhang, Bin B; Zhang, Clarence K CK; Zhao, Hongyu H; , ; Silverberg, Mark S MS; Annese, Vito V; Hakonarson, Hakon H; Brant, Steven R SR; Radford-Smith, Graham G; Mathew, Christopher G CG; Rioux, John D JD; Schadt, Eric E EE; Daly, Mark J MJ; Franke, Andre A; Parkes, Miles M; Vermeire, Severine S; Barrett, Jeffrey C JC; Cho, Judy H JH

Publication Date: 2012-11-01

Variant appearance in text: rs7404095

PubMed Link: 23128233

Variant Present in the following documents:

• Main text

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