Publications:

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Retinal chromophore charge delocalization and confinement explain the extreme photophysics of Neorhodopsin.

Nature Communications

Palombo, Riccardo R; Barneschi, Leonardo L; Pedraza-González, Laura L; Padula, Daniele D; Schapiro, Igor I; Olivucci, Massimo M

Publication Date: 2022-11-04

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PubMed Link: 36333283

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Synthesis, characterization, crystal structure and Hirshfeld surface analysis of a hexa-hydro-quinoline derivative: tert-butyl 4-([1,1'-biphen-yl]-4-yl)-2,6,6-trimethyl-5-oxo-1,4,5,6,7,8-hexa-hydro-quinoline-3-carboxyl-ate.

Acta Crystallographica. Section E, Crystallographic Communications

Yıldırım, Sema Öztürk SÖ; Akkurt, Mehmet M; Çetin, Gökalp G; Şimşek, Rahime R; Butcher, Ray J RJ; Bhattarai, Ajaya A

Publication Date: 2022-08-01

Variant appearance in text: NSF: C11C

PubMed Link: 35974826

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• e-78-00798.pdf

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Evolution of the Automatic Rhodopsin Modeling (ARM) Protocol.

Topics In Current Chemistry (Cham)

Pedraza-González, Laura L; Barneschi, Leonardo L; Padula, Daniele D; De Vico, Luca L; Olivucci, Massimo M

Publication Date: 2022-03-15

Variant appearance in text: NSF: C11=

PubMed Link: 35291019

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• 41061_2022_Article_374.pdf

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Quantum-classical simulations of rhodopsin reveal excited-state population splitting and its effects on quantum efficiency.

Nature Chemistry

Yang, Xuchun X; Manathunga, Madushanka M; Gozem, Samer S; Léonard, Jérémie J; Andruniów, Tadeusz T; Olivucci, Massimo M

Publication Date: 2022-04

Variant appearance in text: NSF: C11=

PubMed Link: 35241801

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• nihms-1771505.pdf

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GHz Ultrasonic Chip-Scale Device Induces Ion Channel Stimulation in Human Neural Cells.

Scientific Reports

Balasubramanian, Priya S PS; Singh, Ankur A; Xu, Chris C; Lal, Amit A

Publication Date: 2020-02-20

Variant appearance in text: NSF: C11C

PubMed Link: 32080204

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Red-shifting mutation of light-driven sodium-pump rhodopsin.

Nature Communications

Inoue, Keiichi K; Del Carmen Marín, María M; Tomida, Sahoko S; Nakamura, Ryoko R; Nakajima, Yuta Y; Olivucci, Massimo M; Kandori, Hideki H

Publication Date: 2019-04-30

Variant appearance in text: NSF: C11=

PubMed Link: 31040285

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• 41467_2019_Article_10000.pdf

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Synthesis of 9-CD3-9-cis-Retinal Cofactor of Isorhodopsin.

Tetrahedron Letters

Navidi, Mozhgan M; Yadav, Shreya S; Struts, Andrey V AV; Brown, Michael F MF; Nesnas, Nasri N

Publication Date: 2018-12-19

Variant appearance in text: NSF: C11=

PubMed Link: 30692701

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Engineering the vibrational coherence of vision into a synthetic molecular device.

Nature Communications

Gueye, Moussa M; Manathunga, Madushanka M; Agathangelou, Damianos D; Orozco, Yoelvis Y; Paolino, Marco M; Fusi, Stefania S; Haacke, Stefan S; Olivucci, Massimo M; Léonard, Jérémie J

Publication Date: 2018-01-22

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PubMed Link: 29358689

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Tris(μ2-methano-lato)-μ3-oxido-tris-{[(E)-4-chloro-2-({[2-(pyridin-2-yl)eth-yl]imino}-meth-yl)pheno-lato]manganese(III)} perchlorate-di-chloro-methane-diethyl ether (1/1.1/0.9).

Acta Crystallographica. Section E, Crystallographic Communications

Egekenze, Rita R; Gultneh, Yilma Y; Butcher, Ray J RJ

Publication Date: 2017-07-01

Variant appearance in text: NSF: C11C

PubMed Link: 28932417

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• e-73-01113.pdf

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Crystal structure of 5,7,12,14-tetra-hydro-5,14:7,12-bis-([1,2]benzeno)-penta-cene-6,13-dione.

Acta Crystallographica. Section E, Crystallographic Communications

Nozari, Mohammad M; Jasinski, Jerry P JP; Kaur, Manpreet M; Addison, Anthony W AW; Arabi Shamsabadi, Ahmad A; Soroush, Masoud M

Publication Date: 2016-12-01

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PubMed Link: 27980819

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• e-72-01734.pdf

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Improved Compressive Sensing of Natural Scenes Using Localized Random Sampling.

Scientific Reports

Barranca, Victor J VJ; Kovačič, Gregor G; Zhou, Douglas D; Cai, David D

Publication Date: 2016-08-24

Variant appearance in text: NSF: C11C

PubMed Link: 27555464

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• srep31976.pdf

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Bruceolline D: 3,3-dimethyl-1H,4H-cyclo-penta-[b]indol-2(3H)-one.

Acta Crystallographica. Section E, Structure Reports Online

Lopchuk, Justin M JM; Gribble, Gordon W GW; Jasinski, Jerry P JP

Publication Date: 2013

Variant appearance in text: NSF: C11C

PubMed Link: 24046619

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(2S,3R,4S,4aR)-2,3,4,7-Tetra-hydroxy-3,4,4a,5-tetra-hydro-[1,3]dioxolo[4,5-j]phenanthridin-6(2H)-one hemihydrate.

Acta Crystallographica. Section E, Structure Reports Online

Jucov, Evgheni E; Kornienko, Alexander A; Masi, Marco M; Evidente, Antonio A; Antipin, Mikhail M

Publication Date: 2013-01-01

Variant appearance in text: NSF: C11C

PubMed Link: 23476470

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• e-69-000o9.pdf

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4,4'-Bis[2-(3,5-dimeth-oxy-phen-yl)ethen-yl]biphen-yl.

Acta Crystallographica. Section E, Structure Reports Online

Collas, Alain A; Zeller, Matthias M; Blockhuys, Frank F

Publication Date: 2011-05-01

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PubMed Link: 21754429

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1-(1-Hy-droxy-8-methyl-9H-carbazol-2-yl)ethanone.

Acta Crystallographica. Section E, Structure Reports Online

Archana, R R; Prabakaran, K K; Rajendra Prasad, K J KJ; Thiruvalluvar, A A; Butcher, R J RJ

Publication Date: 2010-11-13

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PubMed Link: 21589445

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(1E)-1-(3-Bromo-phen-yl)ethanone 2,4-di-nitro-phenyl-hydrazone.

Acta Crystallographica. Section E, Structure Reports Online

Jasinski, Jerry P JP; Guild, Curtis J CJ; Chidan Kumar, C S CS; Yathirajan, H S HS; Mayekar, A N AN

Publication Date: 2010-10-20

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PubMed Link: 21589019

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4-(4-Chloro-phen-yl)-4-hy-droxy-piperidinium maleate maleic acid solvate.

Acta Crystallographica. Section E, Structure Reports Online

Jasinski, Jerry P JP; Pek, Albert E AE; Siddaraju, B P BP; Yathirajan, H S HS; Narayana, B B

Publication Date: 2010-07-14

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PubMed Link: 21588324

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• e-66-o2012.pdf

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Desipramine hydro-chloride: a non-merohedrally twinned structure.

Acta Crystallographica. Section E, Structure Reports Online

Jasinski, Jerry P JP; Butcher, Ray J RJ; Hakim Al-Arique, Q N M QN; Yathirajan, H S HS; Ramesha, A R AR

Publication Date: 2010-02-20

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PubMed Link: 21580421

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1-(4-Bromo-phen-yl)-3-butano-ylthio-urea.

Acta Crystallographica. Section E, Structure Reports Online

Saeed, Sohail S; Rashid, Naghmana N; Jasinski, Jerry P JP; Butcher, Ray J RJ; Shoaib, Muhammad M

Publication Date: 2010-12-08

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PubMed Link: 21522755

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Orphenadrinium picrate.

Acta Crystallographica. Section E, Structure Reports Online

Jasinski, Jerry P JP; Butcher, Ray J RJ; Siddaraju, B P BP; Yathirajan, H S HS; Narayana, B B

Publication Date: 2010-12-18

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PubMed Link: 21522693

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Bis{4-[(Z)-N'-(4-hydroxy-benzyl-idene)hydrazino]-8-(trifluoro-meth-yl)quinolinium} sulfate dihydrate.

Acta Crystallographica. Section E, Structure Reports Online

Jasinski, Jerry P JP; Butcher, Ray J RJ; Narayana, B B; Sunil, K K; Yathirajan, H S HS

Publication Date: 2008-01-23

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PubMed Link: 21201506

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• e-64-0o481.pdf

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Solid-state 2H NMR spectroscopy of retinal proteins in aligned membranes.

Biochimica Et Biophysica Acta

Brown, Michael F MF; Heyn, Maarten P MP; Job, Constantin C; Kim, Suhkmann S; Moltke, Stephan S; Nakanishi, Koji K; Nevzorov, Alexander A AA; Struts, Andrey V AV; Salgado, Gilmar F J GF; Wallat, Ingrid I

Publication Date: 2007-12

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PubMed Link: 18021739

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Dynamic structure of retinylidene ligand of rhodopsin probed by molecular simulations.

Journal Of Molecular Biology

Lau, Pick-Wei PW; Grossfield, Alan A; Feller, Scott E SE; Pitman, Michael C MC; Brown, Michael F MF

Publication Date: 2007-09-28

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PubMed Link: 17719606

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