Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Publication Date: 2023-04-03
Variant appearance in text: TNFSF12-TNFSF13: N176S
Bi-allelic mutation in SEC16B alters collagen trafficking and increases ER stress.
Embo Molecular Medicine
El-Gazzar, Ahmed A; Voraberger, Barbara B; Rauch, Frank F; Mairhofer, Mario M; Schmidt, Katy K; Guillemyn, Brecht B; Mitulović, Goran G; Reiterer, Veronika V; Haun, Margot M; Mayr, Michaela M MM; Mayr, Johannes A JA; Kimeswenger, Susanne S; Drews, Oliver O; Saraff, Vrinda V; Shaw, Nick N; Fratzl-Zelman, Nadja N; Symoens, Sofie S; Farhan, Hesso H; Högler, Wolfgang W
Publication Date: 2023-03-14
Variant appearance in text: TNFSF12-TNFSF13: 527A>G; Asn176Ser
Genetic regulation of serum IgA levels and susceptibility to common immune, infectious, kidney, and cardio-metabolic traits.
Nature Communications
Liu, Lili L; Khan, Atlas A; Sanchez-Rodriguez, Elena E; Zanoni, Francesca F; Li, Yifu Y; Steers, Nicholas N; Balderes, Olivia O; Zhang, Junying J; Krithivasan, Priya P; LeDesma, Robert A RA; Fischman, Clara C; Hebbring, Scott J SJ; Harley, John B JB; Moncrieffe, Halima H; Kottyan, Leah C LC; Namjou-Khales, Bahram B; Walunas, Theresa L TL; Knevel, Rachel R; Raychaudhuri, Soumya S; Karlson, Elizabeth W EW; Denny, Joshua C JC; Stanaway, Ian B IB; Crosslin, David D; Rauen, Thomas T; Floege, Jürgen J; Eitner, Frank F; Moldoveanu, Zina Z; Reily, Colin C; Knoppova, Barbora B; Hall, Stacy S; Sheff, Justin T JT; Julian, Bruce A BA; Wyatt, Robert J RJ; Suzuki, Hitoshi H; Xie, Jingyuan J; Chen, Nan N; Zhou, Xujie X; Zhang, Hong H; Hammarström, Lennart L; Viktorin, Alexander A; Magnusson, Patrik K E PKE; Shang, Ning N; Hripcsak, George G; Weng, Chunhua C; Rundek, Tatjana T; Elkind, Mitchell S V MSV; Oelsner, Elizabeth C EC; Barr, R Graham RG; Ionita-Laza, Iuliana I; Novak, Jan J; Gharavi, Ali G AG; Kiryluk, Krzysztof K
Beneficial effects of mifepristone treatment in breast cancer patients selected by the progesterone receptor isoform ratio: Results from the MIPRA trial.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Elía, Andrés A; Saldain, Leo L; Vanzulli, Silvia I SI; Helguero, Luisa A LA; Lamb, Caroline A CA; Fabris, Victoria V; Pataccini, Gabriela G; Martínez-Vazquez, Paula P; Burruchaga, Javier J; Caillet-Bois, Ines I; Spengler, Eunice E; Acosta Haab, Gabriela G; Liguori, Marcos M; Castets, Alejandra A; Lovisi, Silvia S; Abascal, María F MF; Novaro, Virginia V; Sánchez, Jana J; Muñoz, Javier J; Belizán, Jose M JM; Abba, Martín C MC; Gass, Hugo H; Rojas, Paola P; Lanari, Claudia C
Publication Date: 2022-10-21
Variant appearance in text: TNFSF12-TNFSF13: 527A>G; Asn176Ser; rs3803800
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Genomic crossroads between non-Hodgkin's lymphoma and common variable immunodeficiency.
Frontiers In Immunology
Guevara-Hoyer, Kissy K; Fuentes-Antrás, Jesús J; de la Fuente-Muñoz, Eduardo E; Fernández-Arquero, Miguel M; Solano, Fernando F; Pérez-Segura, Pedro P; Neves, Esmeralda E; Ocaña, Alberto A; Pérez de Diego, Rebeca R; Sánchez-Ramón, Silvia S
Protein and functional isoform levels and genetic variants of the BAFF and APRIL pathway components in systemic lupus erythematosus.
Scientific Reports
Ortiz-Aljaro, Pilar P; Montes-Cano, Marco Antonio MA; García-Lozano, José-Raúl JR; Aquino, Virginia V; Carmona, Rosario R; Perez-Florido, Javier J; García-Hernández, Francisco José FJ; Dopazo, Joaquín J; González-Escribano, María Francisca MF
Publication Date: 2022-07-02
Variant appearance in text: TNFSF13: Asn96Ser; rs3803800
Neoadjuvant PD-1 Blockade Combined With Chemotherapy Followed by Concurrent Immunoradiotherapy in Locally Advanced Anal Canal Squamous Cell Carcinoma Patients: Antitumor Efficacy, Safety and Biomarker Analysis.
Frontiers In Immunology
Xiao, WeiWei W; Yuan, Yan Y; Wang, SuiHai S; Liao, Zhidong Z; Cai, PeiQiang P; Chen, BaoQing B; Zhang, Rong R; Wang, Fang F; Zeng, ZhiFan Z; Gao, YuanHong Y
Publication Date: 2021
Variant appearance in text: TNFSF12-TNFSF13: N176S
Peptide ancestry informative markers in uterine neoplasms from women of European, African, and Asian ancestry.
Iscience
Bateman, Nicholas W NW; Tarney, Christopher M CM; Abulez, Tamara S TS; Hood, Brian L BL; Conrads, Kelly A KA; Zhou, Ming M; Soltis, Anthony R AR; Teng, Pang-Ning PN; Jackson, Amanda A; Tian, Chunqiao C; Dalgard, Clifton L CL; Wilkerson, Matthew D MD; Kessler, Michael D MD; Goecker, Zachary Z; Loffredo, Jeremy J; Shriver, Craig D CD; Hu, Hai H; Cote, Michele M; Parker, Glendon J GJ; Segars, James J; Al-Hendy, Ayman A; Risinger, John I JI; Phippen, Neil T NT; Casablanca, Yovanni Y; Darcy, Kathleen M KM; Maxwell, G Larry GL; Conrads, Thomas P TP; O'Connor, Timothy D TD
Epione application: An integrated web‑toolkit of clinical genomics and personalized medicine in systemic lupus erythematosus.
International Journal Of Molecular Medicine
Papageorgiou, Louis L; Alkenaris, Haris H; Zervou, Maria I MI; Vlachakis, Dimitriοs D; Matalliotakis, Ioannis I; Spandidos, Demetrios A DA; Bertsias, George G; Goulielmos, George N GN; Eliopoulos, Elias E
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: TNFSF13: 287A>G; N96S; rs3803800
Advanced bioinformatic analysis and pathway prediction of NSCLC cells upon cisplatin resistance.
Scientific Reports
Hossian, A K M Nawshad AKMN; Zahra, Fatema Tuz FT; Poudel, Sagun S; Abshire, Camille F CF; Polk, Paula P; Garai, Jone J; Zabaleta, Jovanny J; Mikelis, Constantinos M CM; Mattheolabakis, George G
Publication Date: 2021-03-22
Variant appearance in text: TNFSF13: 287A>G; Asn96Ser
Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells.
Npj Systems Biology And Applications
Immanuel, Selva Rupa Christinal SRC; Ghanate, Avinash D AD; Parmar, Dharmeshkumar S DS; Yadav, Ritu R; Uthup, Riya R; Panchagnula, Venkateswarlu V; Raghunathan, Anu A
Publication Date: 2021-01-08
Variant appearance in text: TNFSF12-TNFSF13: 527A>G; N176S; rs3803800
IgA Nephropathy Genetic Risk Score to Estimate the Prevalence of IgA Nephropathy in UK Biobank.
Kidney International Reports
Sukcharoen, Kittiya K; Sharp, Seth A SA; Thomas, Nicholas J NJ; Kimmitt, Robert A RA; Harrison, Jamie J; Bingham, Coralie C; Mozere, Monika M; Weedon, Michael N MN; Tyrrell, Jessica J; Barratt, Jonathan J; Gale, Daniel P DP; Oram, Richard A RA
Association of Common Variants of TNFSF13 and TNFRSF13B Genes with CLL Risk and Clinical Picture, as Well as Expression of Their Products-APRIL and TACI Molecules.
Cancers
Jasek, Monika M; Bojarska-Junak, Agnieszka A; Sobczyński, Maciej M; Wagner, Marta M; Chocholska, Sylwia S; Roliński, Jacek J; Wołowiec, Dariusz D; Karabon, Lidia L
Publication Date: 2020-10-06
Variant appearance in text: TNFSF13: Asn96Ser; rs3803800
Abstracts for the 32nd European Immunogenetics and Histocompatibility Conference and the 25th Annual Meeting of the Italian Society for Immunogenetics and Transplantation Biology (AIBT) Venice Lido, Italy May 9-12, 2018.
XAF1 as a modifier of p53 function and cancer susceptibility.
Science Advances
Pinto, Emilia M EM; Figueiredo, Bonald C BC; Chen, Wenan W; Galvao, Henrique C R HCR; Formiga, Maria Nirvana MN; Fragoso, Maria Candida B V MCBV; Ashton-Prolla, Patricia P; Ribeiro, Enilze M S F EMSF; Felix, Gabriela G; Costa, Tatiana E B TEB; Savage, Sharon A SA; Yeager, Meredith M; Palmero, Edenir I EI; Volc, Sahlua S; Salvador, Hector H; Fuster-Soler, Jose Luis JL; Lavarino, Cinzia C; Chantada, Guillermo G; Vaur, Dominique D; Odone-Filho, Vicente V; Brugières, Laurence L; Else, Tobias T; Stoffel, Elena M EM; Maxwell, Kara N KN; Achatz, Maria Isabel MI; Kowalski, Luis L; de Andrade, Kelvin C KC; Pappo, Alberto A; Letouze, Eric E; Latronico, Ana Claudia AC; Mendonca, Berenice B BB; Almeida, Madson Q MQ; Brondani, Vania B VB; Bittar, Camila M CM; Soares, Emerson W S EWS; Mathias, Carolina C; Ramos, Cintia R N CRN; Machado, Moara M; Zhou, Weiyin W; Jones, Kristine K; Vogt, Aurelie A; Klincha, Payal P PP; Santiago, Karina M KM; Komechen, Heloisa H; Paraizo, Mariana M MM; Parise, Ivy Z S IZS; Hamilton, Kayla V KV; Wang, Jinling J; Rampersaud, Evadnie E; Clay, Michael R MR; Murphy, Andrew J AJ; Lalli, Enzo E; Nichols, Kim E KE; Ribeiro, Raul C RC; Rodriguez-Galindo, Carlos C; Korbonits, Marta M; Zhang, Jinghui J; Thomas, Mark G MG; Connelly, Jon P JP; Pruett-Miller, Shondra S; Diekmann, Yoan Y; Neale, Geoffrey G; Wu, Gang G; Zambetti, Gerard P GP
Publication Date: 2020-06
Variant appearance in text: TNFSF13: N96S; rs3803800
Multi-level evidence of an allelic hierarchy of USH2A variants in hearing, auditory processing and speech/language outcomes.
Communications Biology
Perrino, Peter A PA; Talbot, Lidiya L; Kirkland, Rose R; Hill, Amanda A; Rendall, Amanda R AR; Mountford, Hayley S HS; Taylor, Jenny J; , ; Buscarello, Alexzandrea N AN; Lahiri, Nayana N; Saggar, Anand A; Fitch, R Holly RH; Newbury, Dianne F DF
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
Publication Date: 2020-02
Variant appearance in text: TNFSF12-TNFSF13: Asn176Ser
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
Publication Date: 2019-10-09
Variant appearance in text: TNFSF12-TNFSF13: N176S; rs3803800
Genome-wide association study identifies new susceptible loci of IgA nephropathy in Koreans.
Bmc Medical Genomics
Jeong, Kyung Hwan KH; Kim, Jin Sug JS; Lee, Yu Ho YH; Kim, Yang Gyun YG; Moon, Ju-Young JY; Kim, Su Kang SK; Kang, Sun Woo SW; Kim, Tae Hee TH; Lee, Sang Ho SH; Kim, Yeong Hoon YH; ,
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Publication Date: 2019-03-20
Variant appearance in text: TNFSF13: N96S; rs3803800
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.
Cell Death & Disease
Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D
Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.
Nature Genetics
Liu, Mengzhen M; Jiang, Yu Y; Wedow, Robbee R; Li, Yue Y; Brazel, David M DM; Chen, Fang F; Datta, Gargi G; Davila-Velderrain, Jose J; McGuire, Daniel D; Tian, Chao C; Zhan, Xiaowei X; , ; , ; Choquet, Hélène H; Docherty, Anna R AR; Faul, Jessica D JD; Foerster, Johanna R JR; Fritsche, Lars G LG; Gabrielsen, Maiken Elvestad ME; Gordon, Scott D SD; Haessler, Jeffrey J; Hottenga, Jouke-Jan JJ; Huang, Hongyan H; Jang, Seon-Kyeong SK; Jansen, Philip R PR; Ling, Yueh Y; Mägi, Reedik R; Matoba, Nana N; McMahon, George G; Mulas, Antonella A; Orrù, Valeria V; Palviainen, Teemu T; Pandit, Anita A; Reginsson, Gunnar W GW; Skogholt, Anne Heidi AH; Smith, Jennifer A JA; Taylor, Amy E AE; Turman, Constance C; Willemsen, Gonneke G; Young, Hannah H; Young, Kendra A KA; Zajac, Gregory J M GJM; Zhao, Wei W; Zhou, Wei W; Bjornsdottir, Gyda G; Boardman, Jason D JD; Boehnke, Michael M; Boomsma, Dorret I DI; Chen, Chu C; Cucca, Francesco F; Davies, Gareth E GE; Eaton, Charles B CB; Ehringer, Marissa A MA; Esko, Tõnu T; Fiorillo, Edoardo E; Gillespie, Nathan A NA; Gudbjartsson, Daniel F DF; Haller, Toomas T; Harris, Kathleen Mullan KM; Heath, Andrew C AC; Hewitt, John K JK; Hickie, Ian B IB; Hokanson, John E JE; Hopfer, Christian J CJ; Hunter, David J DJ; Iacono, William G WG; Johnson, Eric O EO; Kamatani, Yoichiro Y; Kardia, Sharon L R SLR; Keller, Matthew C MC; Kellis, Manolis M; Kooperberg, Charles C; Kraft, Peter P; Krauter, Kenneth S KS; Laakso, Markku M; Lind, Penelope A PA; Loukola, Anu A; Lutz, Sharon M SM; Madden, Pamela A F PAF; Martin, Nicholas G NG; McGue, Matt M; McQueen, Matthew B MB; Medland, Sarah E SE; Metspalu, Andres A; Mohlke, Karen L KL; Nielsen, Jonas B JB; Okada, Yukinori Y; Peters, Ulrike U; Polderman, Tinca J C TJC; Posthuma, Danielle D; Reiner, Alexander P AP; Rice, John P JP; Rimm, Eric E; Rose, Richard J RJ; Runarsdottir, Valgerdur V; Stallings, Michael C MC; Stančáková, Alena A; Stefansson, Hreinn H; Thai, Khanh K KK; Tindle, Hilary A HA; Tyrfingsson, Thorarinn T; Wall, Tamara L TL; Weir, David R DR; Weisner, Constance C; Whitfield, John B JB; Winsvold, Bendik Slagsvold BS; Yin, Jie J; Zuccolo, Luisa L; Bierut, Laura J LJ; Hveem, Kristian K; Lee, James J JJ; Munafò, Marcus R MR; Saccone, Nancy L NL; Willer, Cristen J CJ; Cornelis, Marilyn C MC; David, Sean P SP; Hinds, David A DA; Jorgenson, Eric E; Kaprio, Jaakko J; Stitzel, Jerry A JA; Stefansson, Kari K; Thorgeirsson, Thorgeir E TE; Abecasis, Gonçalo G; Liu, Dajiang J DJ; Vrieze, Scott S
Molecular insights into genome-wide association studies of chronic kidney disease-defining traits.
Nature Communications
Xu, Xiaoguang X; Eales, James M JM; Akbarov, Artur A; Guo, Hui H; Becker, Lorenz L; Talavera, David D; Ashraf, Fehzan F; Nawaz, Jabran J; Pramanik, Sanjeev S; Bowes, John J; Jiang, Xiao X; Dormer, John J; Denniff, Matthew M; Antczak, Andrzej A; Szulinska, Monika M; Wise, Ingrid I; Prestes, Priscilla R PR; Glyda, Maciej M; Bogdanski, Pawel P; Zukowska-Szczechowska, Ewa E; Berzuini, Carlo C; Woolf, Adrian S AS; Samani, Nilesh J NJ; Charchar, Fadi J FJ; Tomaszewski, Maciej M
X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family.
Scientific Reports
Khan, Muhammad Jaseem MJ; Pollock, Nijole N; Jiang, Huaiyang H; Castro, Carlos C; Nazli, Rubina R; Ahmed, Jawad J; Basit, Sulman S; Rajkovic, Aleksandar A; Yatsenko, Alexander N AN
Publication Date: 2018-11-02
Variant appearance in text: TNFSF12-TNFSF13: N176S; rs3803800