Publications:

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Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: TP53: 263C>A; S88Y

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Pharmacogenetics of hepatocellular carcinoma and cholangiocarcinoma.

Cancer Drug Resistance (Alhambra, Calif.)

Alonso-Peña, Marta M; Sanchez-Martin, Anabel A; Sanchon-Sanchez, Paula P; Soto-Muñiz, Meraris M; Espinosa-Escudero, Ricardo R; Marin, Jose J G JJG

Publication Date: 2019

Variant appearance in text: TP53: 263C>A

PubMed Link: 35582588

Variant Present in the following documents:

• cdr-2-680.pdf

View BVdb publication page

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Validation and clinical application of transactivation assays for RUNX1 variant classification.

Blood Advances

Decker, Melanie M; Agarwal, Anupriya A; Benneche, Andreas A; Churpek, Jane J; Duployez, Nicolas N; Duvall, Adam A; Ernst, Martijn P T MPT; Förster, Alisa A; Høberg-Vetti, Hildegunn H; Hofmann, Inga I; Nash, Michelle M; Raaijmakers, Marc H G P MHGP; Tvedt, Tor H A THA; Vlachos, Adrianna A; Schlegelberger, Brigitte B; Illig, Thomas T; Ripperger, Tim T

Publication Date: 2022-06-14

Variant appearance in text: TP53: 263C>A

PubMed Link: 35026845

Variant Present in the following documents:

• Main text

View BVdb publication page

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α4/α9 Integrins Coordinate Epithelial Cell Migration Through Local Suppression of MAP Kinase Signaling Pathways.

Frontiers In Cell And Developmental Biology

Hight-Warburton, Willow W; Felix, Robert R; Burton, Andrew A; Maple, Hannah H; Chegkazi, Magda S MS; Steiner, Roberto A RA; McGrath, John A JA; Parsons, Maddy M

Publication Date: 2021

Variant appearance in text: p53: A88D

PubMed Link: 34900996

Variant Present in the following documents:

• Main text

View BVdb publication page

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KRAS signaling in malignant pleural mesothelioma.

Embo Molecular Medicine

Marazioti, Antonia A; Krontira, Anthi C AC; Behrend, Sabine J SJ; Giotopoulou, Georgia A GA; Ntaliarda, Giannoula G; Blanquart, Christophe C; Bayram, Hasan H; Iliopoulou, Marianthi M; Vreka, Malamati M; Trassl, Lilith L; Pepe, Mario A A MAA; Hackl, Caroline M CM; Klotz, Laura V LV; Weiss, Stefanie A I SAI; Koch, Ina I; Lindner, Michael M; Hatz, Rudolph A RA; Behr, Juergen J; Wagner, Darcy E DE; Papadaki, Helen H; Antimisiaris, Sophia G SG; Jean, Didier D; Deshayes, Sophie S; Grégoire, Marc M; Kayalar, Özgecan Ö; Mortazavi, Deniz D; Dilege, Şükrü Ş; Tanju, Serhan S; Erus, Suat S; Yavuz, Ömer Ö; Bulutay, Pınar P; Fırat, Pınar P; Psallidas, Ioannis I; Spella, Magda M; Giopanou, Ioanna I; Lilis, Ioannis I; Lamort, Anne-Sophie AS; Stathopoulos, Georgios T GT

Publication Date: 2022-02-07

Variant appearance in text: TP53: A88D

PubMed Link: 34898002

Variant Present in the following documents:

• EMMM-14-e13631-s001.xlsx, sheet 3
• EMMM-14-e13631-s012.xlsx, sheet 3

View BVdb publication page

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KRAS signaling in malignant pleural mesothelioma.

Embo Molecular Medicine

Marazioti, Antonia A; Krontira, Anthi C AC; Behrend, Sabine J SJ; Giotopoulou, Georgia A GA; Ntaliarda, Giannoula G; Blanquart, Christophe C; Bayram, Hasan H; Iliopoulou, Marianthi M; Vreka, Malamati M; Trassl, Lilith L; Pepe, Mario A A MAA; Hackl, Caroline M CM; Klotz, Laura V LV; Weiss, Stefanie A I SAI; Koch, Ina I; Lindner, Michael M; Hatz, Rudolph A RA; Behr, Juergen J; Wagner, Darcy E DE; Papadaki, Helen H; Antimisiaris, Sophia G SG; Jean, Didier D; Deshayes, Sophie S; Grégoire, Marc M; Kayalar, Özgecan Ö; Mortazavi, Deniz D; Dilege, Şükrü Ş; Tanju, Serhan S; Erus, Suat S; Yavuz, Ömer Ö; Bulutay, Pınar P; Fırat, Pınar P; Psallidas, Ioannis I; Spella, Magda M; Giopanou, Ioanna I; Lilis, Ioannis I; Lamort, Anne-Sophie AS; Stathopoulos, Georgios T GT

Publication Date: 2021-12-13

Variant appearance in text: TP53: A88D

PubMed Link: 34898002

Variant Present in the following documents:

• EMMM-14-e13631-s001.xlsx, sheet 3
• EMMM-14-e13631-s012.xlsx, sheet 3

View BVdb publication page

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Drug repurposing for coronavirus (SARS-CoV-2) based on gene co-expression network analysis.

Scientific Reports

MotieGhader, Habib H; Safavi, Esmaeil E; Rezapour, Ali A; Amoodizaj, Fatemeh Firouzi FF; Iranifam, Roya Asl RA

Publication Date: 2021-11-08

Variant appearance in text: TP53: A88D

PubMed Link: 34750486

Variant Present in the following documents:

• Main text

View BVdb publication page

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Time-resolved in vivo ubiquitinome profiling by DIA-MS reveals USP7 targets on a proteome-wide scale.

Nature Communications

Steger, Martin M; Demichev, Vadim V; Backman, Mattias M; Ohmayer, Uli U; Ihmor, Phillip P; Müller, Stefan S; Ralser, Markus M; Daub, Henrik H

Publication Date: 2021-09-13

Variant appearance in text: p53: A88D

PubMed Link: 34518535

Variant Present in the following documents:

• Main text

View BVdb publication page

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Effect of Eribulin With or Without Pembrolizumab on Progression-Free Survival for Patients With Hormone Receptor-Positive, ERBB2-Negative Metastatic Breast Cancer: A Randomized Clinical Trial.

Jama Oncology

Tolaney, Sara M SM; Barroso-Sousa, Romualdo R; Keenan, Tanya T; Li, Tianyu T; Trippa, Lorenzo L; Vaz-Luis, Ines I; Wulf, Gerburg G; Spring, Laura L; Sinclair, Natalie Faye NF; Andrews, Chelsea C; Pittenger, Jessica J; Richardson, Edward T ET; Dillon, Deborah D; Lin, Nancy U NU; Overmoyer, Beth B; Partridge, Ann H AH; Van Allen, Eliezer E; Mittendorf, Elizabeth A EA; Winer, Eric P EP; Krop, Ian E IE

Publication Date: 2020-10-01

Variant appearance in text: TP53: A88D

PubMed Link: 32880602

Variant Present in the following documents:

• Main text

View BVdb publication page

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CD9 induces cellular senescence and aggravates atherosclerotic plaque formation.

Cell Death And Differentiation

Cho, Jung Hee JH; Kim, Eok-Cheon EC; Son, Youlim Y; Lee, Da-Woon DW; Park, Yong Seop YS; Choi, Joon Hyuk JH; Cho, Kyung-Hyun KH; Kwon, Ki-Sun KS; Kim, Jae-Ryong JR

Publication Date: 2020-09

Variant appearance in text: p53: A88D

PubMed Link: 32346137

Variant Present in the following documents:

• Main text

View BVdb publication page

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Identification of 12 cancer types through genome deep learning.

Scientific Reports

Sun, Yingshuai Y; Zhu, Sitao S; Ma, Kailong K; Liu, Weiqing W; Yue, Yao Y; Hu, Gang G; Lu, Huifang H; Chen, Wenbin W

Publication Date: 2019-11-21

Variant appearance in text: TP53: a88d

PubMed Link: 31754222

Variant Present in the following documents:

• 41598_2019_53989_MOESM4_ESM.xlsx, sheet 6

View BVdb publication page

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Germline pathogenic variants of 11 breast cancer genes in 7,051 Japanese patients and 11,241 controls.

Nature Communications

Momozawa, Yukihide Y; Iwasaki, Yusuke Y; Parsons, Michael T MT; Kamatani, Yoichiro Y; Takahashi, Atsushi A; Tamura, Chieko C; Katagiri, Toyomasa T; Yoshida, Teruhiko T; Nakamura, Seigo S; Sugano, Kokichi K; Miki, Yoshio Y; Hirata, Makoto M; Matsuda, Koichi K; Spurdle, Amanda B AB; Kubo, Michiaki M

Publication Date: 2018-10-04

Variant appearance in text: TP53: 263C>A; Ala88Asp

PubMed Link: 30287823

Variant Present in the following documents:

• 41467_2018_6581_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

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appreci8: a pipeline for precise variant calling integrating 8 tools.

Bioinformatics (Oxford, England)

Sandmann, Sarah S; Karimi, Mohsen M; de Graaf, Aniek O AO; Rohde, Christian C; Göllner, Stefanie S; Varghese, Julian J; Ernsting, Jan J; Walldin, Gunilla G; van der Reijden, Bert A BA; Müller-Tidow, Carsten C; Malcovati, Luca L; Hellström-Lindberg, Eva E; Jansen, Joop H JH; Dugas, Martin M

Publication Date: 2018-12-15

Variant appearance in text: TP53: 263C>A; Ala88Asp

PubMed Link: 29945233

Variant Present in the following documents:

• bty518_supplementary_data_s4.xlsx, sheet 9
• bty518_supplementary_data_s3.xlsx, sheet 9

View BVdb publication page

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Selective identification of somatic mutations in pancreatic cancer cells through a combination of next-generation sequencing of plasma DNA using molecular barcodes and a bioinformatic variant filter.

Plos One

Kukita, Yoji Y; Ohkawa, Kazuyoshi K; Takada, Ryoji R; Uehara, Hiroyuki H; Katayama, Kazuhiro K; Kato, Kikuya K

Publication Date: 2018

Variant appearance in text: TP53: A88D

PubMed Link: 29451897

Variant Present in the following documents:

• pone.0192611.s007.xlsx, sheet 1

View BVdb publication page

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iFish: predicting the pathogenicity of human nonsynonymous variants using gene-specific/family-specific attributes and classifiers.

Scientific Reports

Wang, Meng M; Wei, Liping L

Publication Date: 2016-08-16

Variant appearance in text: TP53: A88D

PubMed Link: 27527004

Variant Present in the following documents:

• srep31321-s5.xls, sheet 1

View BVdb publication page

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