Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Association of Clinical Aspects and Genetic Variants with the Severity of Cisplatin-Induced Ototoxicity in Head and Neck Squamous Cell Carcinoma: A Prospective Cohort Study.
Cancers
Macedo, Ligia Traldi LT; Costa, Ericka Francislaine Dias EFD; Carvalho, Bruna Fernandes BF; Lourenço, Gustavo Jacob GJ; Calonga, Luciane L; Castilho, Arthur Menino AM; Chone, Carlos Takahiro CT; Lima, Carmen Silvia Passos CSP
Bi-allelic mutation in SEC16B alters collagen trafficking and increases ER stress.
Embo Molecular Medicine
El-Gazzar, Ahmed A; Voraberger, Barbara B; Rauch, Frank F; Mairhofer, Mario M; Schmidt, Katy K; Guillemyn, Brecht B; Mitulović, Goran G; Reiterer, Veronika V; Haun, Margot M; Mayr, Michaela M MM; Mayr, Johannes A JA; Kimeswenger, Susanne S; Drews, Oliver O; Saraff, Vrinda V; Shaw, Nick N; Fratzl-Zelman, Nadja N; Symoens, Sofie S; Farhan, Hesso H; Högler, Wolfgang W
Publication Date: 2023-03-14
Variant appearance in text: ERCC2: 2251A>C; Lys751Gln
SOD2 Gene Variants (rs4880 and rs5746136) and Their Association with Breast Cancer Risk.
Current Issues In Molecular Biology
Gallegos-Arreola, Martha P MP; Ramírez-Patiño, Ramiro R; Sánchez-López, Josefina Y JY; Zúñiga-González, Guillermo M GM; Figuera, Luis E LE; Delgado-Saucedo, Jorge I JI; Gómez-Meda, Belinda C BC; Rosales-Reynoso, Mónica A MA; Puebla-Pérez, Ana M AM; Lemus-Varela, María L ML; Garibaldi-Ríos, Asbiel F AF; Marín-Domínguez, Nayely A NA; Pacheco-Verduzco, Diana P DP; Mohamed-Flores, Emaan A EA
Different Gene Sets Are Associated With Azacitidine Response In Vitro Versus in Myelodysplastic Syndrome Patients.
Hemasphere
Le Pannérer, Marguerite-Marie MM; Diesch, Jeannine J; Casquero, Raquel R; Maher, Michael M; Garcia, Olga O; Haferlach, Torsten T; Zuber, Johannes J; Kündgen, Andrea A; Götze, Katharina S KS; Buschbeck, Marcus M
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Generation of patient-derived models from a metastatic pediatric diffuse leptomeningeal glioneuronal tumor with KIAA1549::BRAF fusion.
Acta Neuropathologica
Messiaen, Julie J; Claeys, Annelies A; Shetty, Aniket A; Spans, Lien L; Derweduwe, Marleen M; Uyttebroeck, Anne A; Depreitere, Bart B; Vanden Bempt, Isabelle I; Sciot, Raf R; Ligon, Keith L KL; Jones, David T W DTW; Jacobs, Sandra A SA; De Smet, Frederik F
Publication Date: 2022-10
Variant appearance in text: ERCC2: 2251A>C; K751Q; rs13181
Pharmacogenetics of taxane-induced neurotoxicity in breast cancer: Systematic review and meta-analysis.
Clinical And Translational Science
Guijosa, Alberto A; Freyria, Ana A; Espinosa-Fernandez, Jose Rodrigo JR; Estrada-Mena, Francisco J FJ; Armenta-Quiroga, Ana Sofía AS; Ortega-Treviño, Maria Fernanda MF; Catalán, Rodrigo R; Antonio-Aguirre, Bani B; Villarreal-Garza, Cynthia C; Perez-Ortiz, Andric C AC
Uncovering the Contribution of Moderate-Penetrance Susceptibility Genes to Breast Cancer by Whole-Exome Sequencing and Targeted Enrichment Sequencing of Candidate Genes in Women of European Ancestry.
Cancers
Dumont, Martine M; Weber-Lassalle, Nana N; Joly-Beauparlant, Charles C; Ernst, Corinna C; Droit, Arnaud A; Feng, Bing-Jian BJ; Dubois, Stéphane S; Collin-Deschesnes, Annie-Claude AC; Soucy, Penny P; Vallée, Maxime M; Fournier, Frédéric F; Lemaçon, Audrey A; Adank, Muriel A MA; Allen, Jamie J; Altmüller, Janine J; Arnold, Norbert N; Ausems, Margreet G E M MGEM; Berutti, Riccardo R; Bolla, Manjeet K MK; Bull, Shelley S; Carvalho, Sara S; Cornelissen, Sten S; Dufault, Michael R MR; Dunning, Alison M AM; Engel, Christoph C; Gehrig, Andrea A; Geurts-Giele, Willemina R R WRR; Gieger, Christian C; Green, Jessica J; Hackmann, Karl K; Helmy, Mohamed M; Hentschel, Julia J; Hogervorst, Frans B L FBL; Hollestelle, Antoinette A; Hooning, Maartje J MJ; Horváth, Judit J; Ikram, M Arfan MA; Kaulfuß, Silke S; Keeman, Renske R; Kuang, Da D; Luccarini, Craig C; Maier, Wolfgang W; Martens, John W M JWM; Niederacher, Dieter D; Nürnberg, Peter P; Ott, Claus-Eric CE; Peters, Annette A; Pharoah, Paul D P PDP; Ramirez, Alfredo A; Ramser, Juliane J; Riedel-Heller, Steffi S; Schmidt, Gunnar G; Shah, Mitul M; Scherer, Martin M; Stäbler, Antje A; Strom, Tim M TM; Sutter, Christian C; Thiele, Holger H; van Asperen, Christi J CJ; van der Kolk, Lizet L; van der Luijt, Rob B RB; Volk, Alexander E AE; Wagner, Michael M; Waisfisz, Quinten Q; Wang, Qin Q; Wang-Gohrke, Shan S; Weber, Bernhard H F BHF; Genome Of The Netherlands Project, ; Ghs Study Group, ; Devilee, Peter P; Tavtigian, Sean S; Bader, Gary D GD; Meindl, Alfons A; Goldgar, David E DE; Andrulis, Irene L IL; Schmutzler, Rita K RK; Easton, Douglas F DF; Schmidt, Marjanka K MK; Hahnen, Eric E; Simard, Jacques J
Genomic, transcriptomic, and metabolomic profiles of hiPSC-derived dopamine neurons from clinically discordant brothers with identical PRKN deletions.
Npj Parkinson'S Disease
Cukier, Holly N HN; Kim, Hyunjin H; Griswold, Anthony J AJ; Codreanu, Simona G SG; Prince, Lisa M LM; Sherrod, Stacy D SD; McLean, John A JA; Dykxhoorn, Derek M DM; Ess, Kevin C KC; Hedera, Peter P; Bowman, Aaron B AB; Neely, M Diana MD
Biodegradable Ultrasmall-in-Nano Architectures Loaded with Cisplatin Prodrug in Combination with Ionizing Radiation Induces DNA Damage and Apoptosis in Pancreatic Ductal Adenocarcinoma.
Cancers
Che, Pei Pei PP; Mapanao, Ana Katrina AK; Gregori, Alessandro A; Ermini, Maria Laura ML; Zamborlin, Agata A; Capula, Mjriam M; Ngadimin, Danitsja D; Slotman, Ben J BJ; Voliani, Valerio V; Sminia, Peter P; Giovannetti, Elisa E
The interplay between XPG-Asp1104His polymorphism and reproductive risk factors elevates risk of breast cancer in Tanzanian women: A multiple interaction analysis.
Cancer Medicine
Adolf, Ismael C IC; Rweyemamu, Linus P LP; Akan, Gokce G; Mselle, Ted F TF; Dharsee, Nazima N; Namkinga, Lucy A LA; Lyantagaye, Sylvester L SL; Atalar, Fatmahan F
Publication Date: 2022-06-12
Variant appearance in text: XPD: Lys751Gln; rs13181
Integrated DNA and RNA Sequencing Reveals Drivers of Endocrine Resistance in Estrogen Receptor-Positive Breast Cancer.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Xia, Youli Y; He, Xiaping X; Renshaw, Lorna L; Martinez-Perez, Carlos C; Kay, Charlene C; Gray, Mark M; Meehan, James J; Parker, Joel S JS; Perou, Charles M CM; Carey, Lisa A LA; Dixon, J Michael JM; Turnbull, Arran A
The current state of genetic risk models for the development of kidney cancer: a review and validation.
Bju International
Harrison, Hannah H; Li, Nicole N; Saunders, Catherine L CL; Rossi, Sabrina H SH; Dennis, Joe J; Griffin, Simon J SJ; Stewart, Grant D GD; Usher-Smith, Juliet A JA
Publication Date: 2022-11
Variant appearance in text: XPD: Lys751Gln; rs13181
Response prediction in patients with gastric and esophagogastric adenocarcinoma under neoadjuvant chemotherapy using targeted gene expression analysis and next-generation sequencing in pre-therapeutic biopsies.
Journal Of Cancer Research And Clinical Oncology
Kleo, Karsten K; Jovanovic, Vladimir M VM; Arndold, Alexander A; Lehmann, Annika A; Lammert, Hedwig H; Berg, Erika E; Harloff, Hannah H; Treese, Christoph C; Hummel, Michael M; Daum, Severin S
Publication Date: 2022-03-05
Variant appearance in text: ERCC2: 2251A>C; Lys751Gln; rs13181
Polymorphisms in DNA Repair and Xenobiotic Biotransformation Enzyme Genes and Lung Cancer Risk in Coal Mine Workers.
Life (Basel, Switzerland)
Minina, Varvara V; Timofeeva, Anna A; Torgunakova, Anastasya A; Soboleva, Olga O; Bakanova, Marina M; Savchenko, Yana Y; Voronina, Elena E; Glushkov, Andrey A; Prosekov, Alexander A; Fucic, Aleksandra A
Publication Date: 2022-02-09
Variant appearance in text: ERCC2: Lys751Gln; rs13181