Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
A scalable Bayesian functional GWAS method accounting for multivariate quantitative functional annotations with applications for studying Alzheimer disease.
Hgg Advances
Chen, Junyu J; Wang, Lei L; De Jager, Philip L PL; Bennett, David A DA; Buchman, Aron S AS; Yang, Jingjing J
No Evidence that CD33 rs12459419 Polymorphism Predicts Gemtuzumab Ozogamicin Response in Consolidation Treatment of Acute Myeloid Leukemia Patients: Experience of the PETHEMA Group.
Disease Markers
Castaño-Bonilla, Tamara T; Barragán, Eva E; Sargas, Claudia C; Sanz, Alejandro A; Algarra, Lorenzo L; Herrera-Puente, Pilar P; García-Boyero, Raimundo R; Barrios, Manuel M; Martinez-Cuadron, David D; Rodriguez-Veiga, Rebeca R; Boluda, Blanca B; Gil, Cristina C; Serrano-López, Josefina J; Martínez-López, Joaquín J; Sayas-Lloris, María José MJ; Olave, María Teresa MT; Riaza-Grau, Rosalía R; Castillo, Teresa Bernal-Del TB; Larrayoz, María José MJ; Amigo, Raquel R; Jiménez-Velasco, Antonio A; Sánchez, Joaquín J; Ayala, Rosa R; Blas, Carlos C; Lainez, Daniel D; Serrano-López, Juana J; Sanz, Miguel A MA; Alonso-Domínguez, Juan M JM; Montesinos, Pau P
Publication Date: 2022
Variant appearance in text: CD33: 41C>T; Ala14Val; rs12459419
Alzheimer's Disease Risk Variant rs3865444 in the CD33 Gene: A Possible Role in Susceptibility to Multiple Sclerosis.
Life (Basel, Switzerland)
Javor, Juraj J; Bucová, Mária M; Ďurmanová, Vladimíra V; Radošinská, Dominika D; Párnická, Zuzana Z; Čierny, Daniel D; Kurča, Egon E; Čopíková-Cudráková, Daniela D; Gmitterová, Karin K; Shawkatová, Ivana I
Phase 1/2 Trial of CLAG-M with Dose-Escalated Mitoxantrone in Combination with Fractionated-Dose Gemtuzumab Ozogamicin for Newly Diagnosed Acute Myeloid Leukemia and Other High-Grade Myeloid Neoplasms.
Cancers
Godwin, Colin D CD; Rodríguez-Arbolí, Eduardo E; Othus, Megan M; Halpern, Anna B AB; Appelbaum, Jacob S JS; Percival, Mary-Elizabeth M MM; Hendrie, Paul C PC; Oehler, Vivian G VG; Keel, Siobán B SB; Abkowitz, Janis L JL; Cooper, Jason P JP; Cassaday, Ryan D RD; Estey, Elihu H EH; Walter, Roland B RB
CD33 Delineates Two Functionally Distinct NK Cell Populations Divergent in Cytokine Production and Antibody-Mediated Cellular Cytotoxicity.
Frontiers In Immunology
Hejazi, Maryam M; Zhang, Congcong C; Bennstein, Sabrina B SB; Balz, Vera V; Reusing, Sarah B SB; Quadflieg, Melissa M; Hoerster, Keven K; Heinrichs, Stefan S; Hanenberg, Helmut H; Oberbeck, Sebastian S; Nitsche, Marcus M; Cramer, Sophie S; Pfeifer, Rita R; Oberoi, Pranav P; Rühl, Heiko H; Oldenburg, Johannes J; Brossart, Peter P; Horn, Peter A PA; Babor, Florian F; Wels, Winfried S WS; Fischer, Johannes C JC; Möker, Nina N; Uhrberg, Markus M
Therapeutic Targeting of Acute Myeloid Leukemia by Gemtuzumab Ozogamicin.
Cancers
Gottardi, Michele M; Simonetti, Giorgia G; Sperotto, Alessandra A; Nappi, Davide D; Ghelli Luserna di Rorà, Andrea A; Padella, Antonella A; Norata, Marianna M; Giannini, Maria Benedetta MB; Musuraca, Gerardo G; Lanza, Francesco F; Cerchione, Claudio C; Martinelli, Giovanni G
Publication Date: 2021-09-11
Variant appearance in text: CD33: Ala14Val; rs12459419
Systematic preclinical evaluation of CD33-directed chimeric antigen receptor T cell immunotherapy for acute myeloid leukemia defines optimized construct design.
Journal For Immunotherapy Of Cancer
Qin, Haiying H; Yang, Lila L; Chukinas, John A JA; Shah, Nirali N; Tarun, Samiksha S; Pouzolles, Marie M; Chien, Christopher D CD; Niswander, Lisa M LM; Welch, Anthony R AR; Taylor, Naomi N; Tasian, Sarah K SK; Fry, Terry J TJ
Genomic atlas of the proteome from brain, CSF and plasma prioritizes proteins implicated in neurological disorders.
Nature Neuroscience
Yang, Chengran C; Farias, Fabiana H G FHG; Ibanez, Laura L; Suhy, Adam A; Sadler, Brooke B; Fernandez, Maria Victoria MV; Wang, Fengxian F; Bradley, Joseph L JL; Eiffert, Brett B; Bahena, Jorge A JA; Budde, John P JP; Li, Zeran Z; Dube, Umber U; Sung, Yun Ju YJ; Mihindukulasuriya, Kathie A KA; Morris, John C JC; Fagan, Anne M AM; Perrin, Richard J RJ; Benitez, Bruno A BA; Rhinn, Herve H; Harari, Oscar O; Cruchaga, Carlos C
Genomic atlas of the proteome from brain, CSF and plasma prioritizes proteins implicated in neurological disorders.
Nature Neuroscience
Yang, Chengran C; Farias, Fabiana H G FHG; Ibanez, Laura L; Suhy, Adam A; Sadler, Brooke B; Fernandez, Maria Victoria MV; Wang, Fengxian F; Bradley, Joseph L JL; Eiffert, Brett B; Bahena, Jorge A JA; Budde, John P JP; Li, Zeran Z; Dube, Umber U; Sung, Yun Ju YJ; Mihindukulasuriya, Kathie A KA; Morris, John C JC; Fagan, Anne M AM; Perrin, Richard J RJ; Benitez, Bruno A BA; Rhinn, Herve H; Harari, Oscar O; Cruchaga, Carlos C
Analysis of Genetic Variants Associated with Levels of Immune Modulating Proteins for Impact on Alzheimer's Disease Risk Reveal a Potential Role for SIGLEC14.
Genes
Shaw, Benjamin C BC; Katsumata, Yuriko Y; Simpson, James F JF; Fardo, David W DW; Estus, Steven S
A map of transcriptional heterogeneity and regulatory variation in human microglia.
Nature Genetics
Young, Adam M H AMH; Kumasaka, Natsuhiko N; Calvert, Fiona F; Hammond, Timothy R TR; Knights, Andrew A; Panousis, Nikolaos N; Park, Jun Sung JS; Schwartzentruber, Jeremy J; Liu, Jimmy J; Kundu, Kousik K; Segel, Michael M; Murphy, Natalia A NA; McMurran, Christopher E CE; Bulstrode, Harry H; Correia, Jason J; Budohoski, Karol P KP; Joannides, Alexis A; Guilfoyle, Mathew R MR; Trivedi, Rikin R; Kirollos, Ramez R; Morris, Robert R; Garnett, Matthew R MR; Timofeev, Ivan I; Jalloh, Ibrahim I; Holland, Katherine K; Mannion, Richard R; Mair, Richard R; Watts, Colin C; Price, Stephen J SJ; Kirkpatrick, Peter J PJ; Santarius, Thomas T; Mountjoy, Edward E; Ghoussaini, Maya M; Soranzo, Nicole N; Bayraktar, Omer A OA; Stevens, Beth B; Hutchinson, Peter J PJ; Franklin, Robin J M RJM; Gaffney, Daniel J DJ
A map of transcriptional heterogeneity and regulatory variation in human microglia.
Nature Genetics
Young, Adam M H AMH; Kumasaka, Natsuhiko N; Calvert, Fiona F; Hammond, Timothy R TR; Knights, Andrew A; Panousis, Nikolaos N; Park, Jun Sung JS; Schwartzentruber, Jeremy J; Liu, Jimmy J; Kundu, Kousik K; Segel, Michael M; Murphy, Natalia A NA; McMurran, Christopher E CE; Bulstrode, Harry H; Correia, Jason J; Budohoski, Karol P KP; Joannides, Alexis A; Guilfoyle, Mathew R MR; Trivedi, Rikin R; Kirollos, Ramez R; Morris, Robert R; Garnett, Matthew R MR; Timofeev, Ivan I; Jalloh, Ibrahim I; Holland, Katherine K; Mannion, Richard R; Mair, Richard R; Watts, Colin C; Price, Stephen J SJ; Kirkpatrick, Peter J PJ; Santarius, Thomas T; Mountjoy, Edward E; Ghoussaini, Maya M; Soranzo, Nicole N; Bayraktar, Omer A OA; Stevens, Beth B; Hutchinson, Peter J PJ; Franklin, Robin J M RJM; Gaffney, Daniel J DJ
Genetic analysis of sinonasal undifferentiated carcinoma discovers recurrent SWI/SNF alterations and a novel PGAP3-SRPK1 fusion gene.
Bmc Cancer
Heft Neal, Molly E ME; Birkeland, Andrew C AC; Bhangale, Apurva D AD; Zhai, Jingyi J; Kulkarni, Aditi A; Foltin, Susan K SK; Jewell, Brittany M BM; Ludwig, Megan L ML; Pinatti, Lisa L; Jiang, Hui H; McHugh, Jonathan B JB; Marentette, Lawence L; McKean, Erin L EL; Brenner, J Chad JC
Publication Date: 2021-05-29
Variant appearance in text: CD33: 41C>T; Ala14Val; rs12459419
Cluster of differentiation 33 single nucleotide polymorphism rs12459419 is a predictive factor in patients with nucleophosmin1-mutated acute myeloid leukemia receiving gemtuzumab ozogamicin.
Haematologica
Teich, Katrin K; Krzykalla, Julia J; Kapp-Schwoerer, Silke S; Gaidzik, Verena I VI; Schlenk, Richard F RF; Paschka, Peter P; Weber, Daniela D; Fiedler, Walter W; Kühn, Michael W M MWM; Schroeder, Thomas T; Mayer, Karin K; Lübbert, Michael M; Ramachandran, Dhanya D; Benner, Axel A; Ganser, Arnold A; Döhner, Hartmut H; Heuser, Michael M; Döhner, Konstanze K; Thol, Felicitas F
Publication Date: 2021-11-01
Variant appearance in text: CD33: 41C>T; Ala14Val; rs12459419
T cell engaging bispecific antibodies targeting CD33 IgV and IgC domains for the treatment of acute myeloid leukemia.
Journal For Immunotherapy Of Cancer
Hoseini, Sayed Shahabuddin SS; Vadlamudi, Mallika M; Espinosa-Cotton, Madelyn M; Tran, Hoa H; Feng, Yi Y; Guo, Hong-Fen HF; Xu, Hong H; Cheung, Irene I; Cheung, Nai-Kong V NV
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: CD33: 41C>T; A14V; rs12459419
The CD33 short isoform is a gain-of-function variant that enhances Aβ1-42 phagocytosis in microglia.
Molecular Neurodegeneration
Bhattacherjee, Abhishek A; Jung, Jaesoo J; Zia, Sameera S; Ho, Madelene M; Eskandari-Sedighi, Ghazaleh G; St Laurent, Chris D CD; McCord, Kelli A KA; Bains, Arjun A; Sidhu, Gaurav G; Sarkar, Susmita S; Plemel, Jason R JR; Macauley, Matthew S MS
Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.
Nature Genetics
Schwartzentruber, Jeremy J; Cooper, Sarah S; Liu, Jimmy Z JZ; Barrio-Hernandez, Inigo I; Bello, Erica E; Kumasaka, Natsuhiko N; Young, Adam M H AMH; Franklin, Robin J M RJM; Johnson, Toby T; Estrada, Karol K; Gaffney, Daniel J DJ; Beltrao, Pedro P; Bassett, Andrew A
Publication Date: 2021-03
Variant appearance in text: CD33: Ala14Val; rs12459419
Targeting the membrane-proximal C2-set domain of CD33 for improved CD33-directed immunotherapy.
Leukemia
Godwin, Colin D CD; Laszlo, George S GS; Fiorenza, Salvatore S; Garling, Eliotte E EE; Phi, Tinh-Doan TD; Bates, Olivia M OM; Correnti, Colin E CE; Hoffstrom, Benjamin G BG; Lunn, Margaret C MC; Humbert, Olivier O; Kiem, Hans-Peter HP; Turtle, Cameron J CJ; Walter, Roland B RB