Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.
Nature Genetics
Robertson, Catherine C CC; Inshaw, Jamie R J JRJ; Onengut-Gumuscu, Suna S; Chen, Wei-Min WM; Santa Cruz, David Flores DF; Yang, Hanzhi H; Cutler, Antony J AJ; Crouch, Daniel J M DJM; Farber, Emily E; Bridges, S Louis SL; Edberg, Jeffrey C JC; Kimberly, Robert P RP; Buckner, Jane H JH; Deloukas, Panos P; Divers, Jasmin J; Dabelea, Dana D; Lawrence, Jean M JM; Marcovina, Santica S; Shah, Amy S AS; Greenbaum, Carla J CJ; Atkinson, Mark A MA; Gregersen, Peter K PK; Oksenberg, Jorge R JR; Pociot, Flemming F; Rewers, Marian J MJ; Steck, Andrea K AK; Dunger, David B DB; , ; Wicker, Linda S LS; Concannon, Patrick P; Todd, John A JA; Rich, Stephen S SS
Publication Date: 2021-07
Variant appearance in text: IFIH1: H460R; rs10930046
Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.
Nature Genetics
Robertson, Catherine C CC; Inshaw, Jamie R J JRJ; Onengut-Gumuscu, Suna S; Chen, Wei-Min WM; Santa Cruz, David Flores DF; Yang, Hanzhi H; Cutler, Antony J AJ; Crouch, Daniel J M DJM; Farber, Emily E; Bridges, S Louis SL; Edberg, Jeffrey C JC; Kimberly, Robert P RP; Buckner, Jane H JH; Deloukas, Panos P; Divers, Jasmin J; Dabelea, Dana D; Lawrence, Jean M JM; Marcovina, Santica S; Shah, Amy S AS; Greenbaum, Carla J CJ; Atkinson, Mark A MA; Gregersen, Peter K PK; Oksenberg, Jorge R JR; Pociot, Flemming F; Rewers, Marian J MJ; Steck, Andrea K AK; Dunger, David B DB; , ; Wicker, Linda S LS; Concannon, Patrick P; Todd, John A JA; Rich, Stephen S SS
Publication Date: 2021-07
Variant appearance in text: IFIH1: H460R; rs10930046
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
Publication Date: 2020-02
Variant appearance in text: IFIH1: 1379A>G; His460Arg
Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation.
Plos Biology
Günther, Torsten T; Malmström, Helena H; Svensson, Emma M EM; Omrak, Ayça A; Sánchez-Quinto, Federico F; Kılınç, Gülşah M GM; Krzewińska, Maja M; Eriksson, Gunilla G; Fraser, Magdalena M; Edlund, Hanna H; Munters, Arielle R AR; Coutinho, Alexandra A; Simões, Luciana G LG; Vicente, Mário M; Sjölander, Anders A; Jansen Sellevold, Berit B; Jørgensen, Roger R; Claes, Peter P; Shriver, Mark D MD; Valdiosera, Cristina C; Netea, Mihai G MG; Apel, Jan J; Lidén, Kerstin K; Skar, Birgitte B; Storå, Jan J; Götherström, Anders A; Jakobsson, Mattias M
Exome-wide association study reveals novel psoriasis susceptibility locus at TNFSF15 and rare protective alleles in genes contributing to type I IFN signalling.
Human Molecular Genetics
Dand, Nick N; Mucha, Sören S; Tsoi, Lam C LC; Mahil, Satveer K SK; Stuart, Philip E PE; Arnold, Andreas A; Baurecht, Hansjörg H; Burden, A David AD; Callis Duffin, Kristina K; Chandran, Vinod V; Curtis, Charles J CJ; Das, Sayantan S; Ellinghaus, David D; Ellinghaus, Eva E; Enerback, Charlotta C; Esko, Tõnu T; Gladman, Dafna D DD; Griffiths, Christopher E M CEM; Gudjonsson, Johann E JE; Hoffman, Per P; Homuth, Georg G; Hüffmeier, Ulrike U; Krueger, Gerald G GG; Laudes, Matthias M; Lee, Sang Hyuck SH; Lieb, Wolfgang W; Lim, Henry W HW; Löhr, Sabine S; Mrowietz, Ulrich U; Müller-Nurayid, Martina M; Nöthen, Markus M; Peters, Annette A; Rahman, Proton P; Reis, André A; Reynolds, Nick J NJ; Rodriguez, Elke E; Schmidt, Carsten O CO; Spain, Sarah L SL; Strauch, Konstantin K; Tejasvi, Trilokraj T; Voorhees, John J JJ; Warren, Richard B RB; Weichenthal, Michael M; Weidinger, Stephan S; Zawistowski, Matthew M; Nair, Rajan P RP; Capon, Francesca F; Smith, Catherine H CH; Trembath, Richard C RC; Abecasis, Goncalo R GR; Elder, James T JT; Franke, Andre A; Simpson, Michael A MA; Barker, Jonathan N JN
The A946T variant of the RNA sensor IFIH1 mediates an interferon program that limits viral infection but increases the risk for autoimmunity.
Nature Immunology
Gorman, Jacquelyn A JA; Hundhausen, Christian C; Errett, John S JS; Stone, Amy E AE; Allenspach, Eric J EJ; Ge, Yan Y; Arkatkar, Tanvi T; Clough, Courtnee C; Dai, Xuezhi X; Khim, Socheath S; Pestal, Kathleen K; Liggitt, Denny D; Cerosaletti, Karen K; Stetson, Daniel B DB; James, Richard G RG; Oukka, Mohamed M; Concannon, Patrick P; Gale, Michael M; Buckner, Jane H JH; Rawlings, David J DJ
Association of IFIH1 and pro-inflammatory mediators: Potential new clues in SLE-associated pathogenesis.
Plos One
Munroe, Melissa E ME; Pezant, Nathan N; Brown, Michael A MA; Fife, Dustin A DA; Guthridge, Joel M JM; Kelly, Jennifer A JA; Wiley, Graham G; Gaffney, Patrick M PM; James, Judith A JA; Montgomery, Courtney G CG
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: IFIH1: H460R; rs10930046
Polymorphisms in melanoma differentiation-associated gene 5 link protein function to clearance of hepatitis C virus.
Hepatology (Baltimore, Md.)
Hoffmann, Franziska S FS; Schmidt, Andreas A; Dittmann Chevillotte, Meike M; Wisskirchen, Christian C; Hellmuth, Johannes J; Willms, Simone S; Gilmore, Rachel H RH; Glas, Jürgen J; Folwaczny, Matthias M; Müller, Tobias T; Berg, Thomas T; Spengler, Ulrich U; Fitzmaurice, Karen K; Kelleher, Dermot D; Reisch, Nicole N; Rice, Charles M CM; Endres, Stefan S; Rothenfusser, Simon S
Publication Date: 2015-02
Variant appearance in text: MDA-5: H460R; rs10930046
Deleterious alleles in the human genome are on average younger than neutral alleles of the same frequency.
Plos Genetics
Kiezun, Adam A; Pulit, Sara L SL; Francioli, Laurent C LC; van Dijk, Freerk F; Swertz, Morris M; Boomsma, Dorret I DI; van Duijn, Cornelia M CM; Slagboom, P Eline PE; van Ommen, G J B GJ; Wijmenga, Cisca C; , ; de Bakker, Paul I W PI; Sunyaev, Shamil R SR
Admixture mapping in lupus identifies multiple functional variants within IFIH1 associated with apoptosis, inflammation, and autoantibody production.
Plos Genetics
Molineros, Julio E JE; Maiti, Amit K AK; Sun, Celi C; Looger, Loren L LL; Han, Shizhong S; Kim-Howard, Xana X; Glenn, Stuart S; Adler, Adam A; Kelly, Jennifer A JA; Niewold, Timothy B TB; Gilkeson, Gary S GS; Brown, Elizabeth E EE; Alarcón, Graciela S GS; Edberg, Jeffrey C JC; Petri, Michelle M; Ramsey-Goldman, Rosalind R; Reveille, John D JD; Vilá, Luis M LM; Freedman, Barry I BI; Tsao, Betty P BP; Criswell, Lindsey A LA; Jacob, Chaim O CO; Moore, Jason H JH; Vyse, Timothy J TJ; Langefeld, Carl L CL; Guthridge, Joel M JM; Gaffney, Patrick M PM; Moser, Kathy L KL; Scofield, R Hal RH; Alarcón-Riquelme, Marta E ME; , ; Williams, Scott M SM; Merrill, Joan T JT; James, Judith A JA; Kaufman, Kenneth M KM; Kimberly, Robert P RP; Harley, John B JB; Nath, Swapan K SK
Lactase persistence and lipid pathway selection in the Maasai.
Plos One
Wagh, Kshitij K; Bhatia, Aatish A; Alexe, Gabriela G; Reddy, Anupama A; Ravikumar, Vijay V; Seiler, Michael M; Boemo, Michael M; Yao, Ming M; Cronk, Lee L; Naqvi, Asad A; Ganesan, Shridar S; Levine, Arnold J AJ; Bhanot, Gyan G
Carriers of rare missense variants in IFIH1 are protected from psoriasis.
The Journal Of Investigative Dermatology
Li, Yonghong Y; Liao, Wilson W; Cargill, Michele M; Chang, Monica M; Matsunami, Nori N; Feng, Bing-Jian BJ; Poon, Annie A; Callis-Duffin, Kristina P KP; Catanese, Joseph J JJ; Bowcock, Anne M AM; Leppert, Mark F MF; Kwok, Pui-Yan PY; Krueger, Gerald G GG; Begovich, Ann B AB
Publication Date: 2010-12
Variant appearance in text: IFIH1: His460Arg; rs10930046