Publications:

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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.

Nature Communications

Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA

Publication Date: 2023-04-03

Variant appearance in text: APOBEC3H: E178D

PubMed Link: 37012232

Variant Present in the following documents:

• 41467_2023_37547_MOESM12_ESM.xlsx, sheet 2

View BVdb publication page

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APOBEC3-mediated mutagenesis in cancer: causes, clinical significance and therapeutic potential.

Journal Of Hematology & Oncology

Butler, Kelly K; Banday, A Rouf AR

Publication Date: 2023-03-28

Variant appearance in text: rs139302

PubMed Link: 36978147

Variant Present in the following documents:

• Main text
• 13045_2023_Article_1425.pdf

View BVdb publication page

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Expanding the prostate cancer cell line repertoire with ACRJ-PC28, an AR-negative neuroendocrine cell line derived from an African-Caribbean patient.

Cancer Research Communications

Valentine, Henkel H; Aiken, William W; Morrison, Belinda B; Zhao, Ziran Z; Fowle, Holly H; Wasserman, Jason S JS; Thompson, Elon E; Chin, Warren W; Young, Mark M; Clarke, Shannique S; Gibbs, Denise D; Harrison, Sharon S; McLaughlin, Wayne W; Kwok, Tim T; Jin, Fang F; Campbell, Kerry S KS; Horvath, Anelia A; Thompson, Rory R; Lee, Norman H NH; Zhou, Yan Y; Graña, Xavier X; Ragin, Camille C; Badal, Simone S

Publication Date: 2022-11

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 36643868

Variant Present in the following documents:

• crc-22-0245-s07.xlsx, sheet 1

View BVdb publication page

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Establishment and characterization of a new mantle cell lymphoma cell line with a NOTCH2 mutation, Arbo.

Ejhaem

Safa, Firas F; Rasmussen, Terri T; Lobelle-Rich, Patricia P; Collier, Stephanie S; Milligan, Nicholas N; Schmeig, John J; Schmid, Janet J; Wiewiorowski, Carol C; Totaro, Denise D; Brown, Theresa C TC; Satyavarapu, Ishwarya I; Badoo, Melody M; Ungerleider, Nathan N; Flemington, Erik K EK; Safah, Hana H; Saba, Nakhle S NS

Publication Date: 2022-11

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 36467812

Variant Present in the following documents:

• JHA2-3-1326-s001.xlsx, sheet 1

View BVdb publication page

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Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports

Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-10-14

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 36241656

Variant Present in the following documents:

• 41598_2022_20939_MOESM10_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM11_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM2_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM9_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM15_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM14_ESM.xlsx, sheet 2

View BVdb publication page

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A genomic deletion encompassing CRYBB2-CRYBB2P1 is responsible for autosomal recessive congenital cataracts.

Human Genome Variation

Irum, Bushra B; Kabir, Firoz F; Shoshany, Nadav N; Khan, Shahid Y SY; Rauf, Bushra B; Naeem, Muhammad Asif MA; Qaiser, Tanveer A TA; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-09-08

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 36075891

Variant Present in the following documents:

• 41439_2022_208_MOESM4_ESM.xlsx, sheet 2
• 41439_2022_208_MOESM5_ESM.xlsx, sheet 2

View BVdb publication page

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Mechanisms of APOBEC3 mutagenesis in human cancer cells.

Nature

Petljak, Mia M; Dananberg, Alexandra A; Chu, Kevan K; Bergstrom, Erik N EN; Striepen, Josefine J; von Morgen, Patrick P; Chen, Yanyang Y; Shah, Hina H; Sale, Julian E JE; Alexandrov, Ludmil B LB; Stratton, Michael R MR; Maciejowski, John J

Publication Date: 2022-07

Variant appearance in text: rs139302

PubMed Link: 35859169

Variant Present in the following documents:

• Main text

View BVdb publication page

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Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition.

Molecular & Cellular Proteomics : Mcp

Schmitt, Marisa M; Sinnberg, Tobias T; Bratl, Katrin K; Zittlau, Katharina K; Garbe, Claus C; Macek, Boris B; Nalpas, Nicolas C NC

Publication Date: 2021-10-19

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 34673281

Variant Present in the following documents:

• mmc2.xlsx, sheet 11
• mmc2.xlsx, sheet 3

View BVdb publication page

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Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition.

Molecular & Cellular Proteomics : Mcp

Schmitt, Marisa M; Sinnberg, Tobias T; Bratl, Katrin K; Zittlau, Katharina K; Garbe, Claus C; Macek, Boris B; Nalpas, Nicolas C NC

Publication Date: 2021

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 34673281

Variant Present in the following documents:

• mmc2.xlsx, sheet 11
• mmc2.xlsx, sheet 3

View BVdb publication page

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Human APOBEC3 Variations and Viral Infection.

Viruses

Sadeghpour, Shiva S; Khodaee, Saeideh S; Rahnama, Mostafa M; Rahimi, Hamzeh H; Ebrahimi, Diako D

Publication Date: 2021-07-14

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 34372572

Variant Present in the following documents:

• Main text
• viruses-13-01366.pdf

View BVdb publication page

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Case Report: A Variant Non-ketotic Hyperglycinemia With GLRX5 Mutations: Manifestation of Deficiency of Activities of the Respiratory Chain Enzymes.

Frontiers In Genetics

Feng, Wei-Xing WX; Zhuo, Xiu-Wei XW; Liu, Zhi-Mei ZM; Li, Jiu-Wei JW; Zhang, Wei-Hua WH; Wu, Yun Y; Han, Tong-Li TL; Fang, Fang F

Publication Date: 2021

Variant appearance in text: APOBEC3H: 534G>C; E178D; rs139302

PubMed Link: 34054912

Variant Present in the following documents:

• Table_2.xlsx, sheet 1

View BVdb publication page

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Roles of APOBEC3 in hepatitis B virus (HBV) infection and hepatocarcinogenesis.

Bioengineered

Zhang, Yuan Y; Chen, Xiaorong X; Cao, Yajuan Y; Yang, Zongguo Z

Publication Date: 2021-12

Variant appearance in text: rs139302

PubMed Link: 34043485

Variant Present in the following documents:

• Main text

View BVdb publication page

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Roles of APOBEC3 in hepatitis B virus (HBV) infection and hepatocarcinogenesis.

Bioengineered

Zhang, Yuan Y; Chen, Xiaorong X; Cao, Yajuan Y; Yang, Zongguo Z

Publication Date: 2021-12

Variant appearance in text: rs139302

PubMed Link: 34043485

Variant Present in the following documents:

• Main text

View BVdb publication page

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Disseminated Talaromyces marneffei Infection in a Non-HIV Infant With a Homozygous Private Variant of RELB.

Frontiers In Cellular And Infection Microbiology

Ding, Xiaofang X; Huang, Han H; Zhong, Lili L; Chen, Min M; Peng, Fang F; Zhang, Bing B; Cui, Xinyu X; Yang, Xiu-An XA

Publication Date: 2021

Variant appearance in text: APOBEC3H: Glu178Asp; rs139302

PubMed Link: 33791233

Variant Present in the following documents:

• Table_2.xlsx, sheet 1

View BVdb publication page

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Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.

Plos One

Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S

Publication Date: 2021

Variant appearance in text: APOBEC3H: 534G>C; E178D; rs139302

PubMed Link: 33770142

Variant Present in the following documents:

• pone.0249324.s003.xlsx, sheet 2
• pone.0249324.s003.xlsx, sheet 3

View BVdb publication page

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Single-nucleotide polymorphism of the DNA cytosine deaminase APOBEC3H haplotype I leads to enzyme destabilization and correlates with lung cancer.

Nar Cancer

Hix, Mark A MA; Wong, Lai L; Flath, Ben B; Chelico, Linda L; Cisneros, G Andrés GA

Publication Date: 2020-09

Variant appearance in text: APOBEC3H: E178D

PubMed Link: 32984821

Variant Present in the following documents:

• Main text
• zcaa023.pdf

View BVdb publication page

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Associations between the single nucleotide polymorphisms of APOBEC3A, APOBEC3B and APOBEC3H, and chronic hepatitis B progression and hepatocellular carcinoma in a Chinese population.

Molecular Medicine Reports

He, Xiuting X; Xu, Hongqin H; Wang, Xiaomei X; Wu, Jing J; Niu, Junqi J; Gao, Pujun P

Publication Date: 2019-09

Variant appearance in text: rs139302

PubMed Link: 31322199

Variant Present in the following documents:

• Main text
• mmr-20-03-2177.pdf

View BVdb publication page

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A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.

Scientific Reports

Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW

Publication Date: 2019-03-20

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 30894629

Variant Present in the following documents:

• 41598_2019_41277_MOESM4_ESM.xlsx, sheet 9
• 41598_2019_41277_MOESM4_ESM.xlsx, sheet 2
• 41598_2019_41277_MOESM4_ESM.xlsx, sheet 12
• 41598_2019_41277_MOESM4_ESM.xlsx, sheet 8
• 41598_2019_41277_MOESM4_ESM.xlsx, sheet 11

View BVdb publication page

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Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.

Cell Death & Disease

Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D

Publication Date: 2019-02-27

Variant appearance in text: APOBEC3H: 534G>C; Glu178Asp; rs139302

PubMed Link: 30814510

Variant Present in the following documents:

• 41419_2019_1453_MOESM27_ESM.xlsx, sheet 3
• 41419_2019_1453_MOESM27_ESM.xlsx, sheet 1
• 41419_2019_1453_MOESM27_ESM.xlsx, sheet 2

View BVdb publication page

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Characterization of APOBEC3 variation in a population of HIV-1 infected individuals in northern South Africa.

Bmc Medical Genetics

Matume, Nontokozo D ND; Tebit, Denis M DM; Gray, Laurie R LR; Turner, Stephen D SD; Rekosh, David D; Bessong, Pascal O PO; Hammarskjöld, Marie-Louise ML

Publication Date: 2019-01-19

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 30660178

Variant Present in the following documents:

• Main text
• 12881_2018_740_MOESM5_ESM.pdf
• 12881_2018_Article_740.pdf

View BVdb publication page

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Multiple genetic mutations caused by NKX6.3 depletion contribute to gastric tumorigenesis.

Scientific Reports

Yoon, Jung Hwan JH; Kim, Olga O; Eun, Jung Woo JW; Choi, Sung Sook SS; Ashktorab, Hassan H; Smoot, Duane T DT; Nam, Suk Woo SW; Park, Won Sang WS

Publication Date: 2018-12-04

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 30514953

Variant Present in the following documents:

• 41598_2018_35733_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Genetic Evidence Supporting the Role of the Calcium Channel, CACNA1S, in Tooth Cusp and Root Patterning.

Frontiers In Physiology

Laugel-Haushalter, Virginie V; Morkmued, Supawich S; Stoetzel, Corinne C; Geoffroy, Véronique V; Muller, Jean J; Boland, Anne A; Deleuze, Jean-François JF; Chennen, Kirsley K; Pitiphat, Waranuch W; Dollfus, Hélène H; Niederreither, Karen K; Bloch-Zupan, Agnès A; Pungchanchaikul, Patimaporn P

Publication Date: 2018

Variant appearance in text: APOBEC3H: 534G>C; Glu178Asp; rs139302

PubMed Link: 30319441

Variant Present in the following documents:

• Table_5.xlsx, sheet 1
• Table_7.xlsx, sheet 1

View BVdb publication page

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Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency.

Annals Of The Rheumatic Diseases

Carapito, Raphael R; Carapito, Christine C; Morlon, Aurore A; Paul, Nicodème N; Vaca Jacome, Alvaro Sebastian AS; Alsaleh, Ghada G; Rolli, Véronique V; Tahar, Ouria O; Aouadi, Ismail I; Rompais, Magali M; Delalande, François F; Pichot, Angélique A; Georgel, Philippe P; Messer, Laurent L; Sibilia, Jean J; Cianferani, Sarah S; Van Dorsselaer, Alain A; Bahram, Seiamak S

Publication Date: 2018-11

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 30030262

Variant Present in the following documents:

• annrheumdis-2018-213524supp002.xlsx, sheet 1

View BVdb publication page

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Whole exome sequencing in three families segregating a pediatric case of sarcoidosis.

Bmc Medical Genomics

Calender, Alain A; Rollat Farnier, Pierre Antoine PA; Buisson, Adrien A; Pinson, Stéphane S; Bentaher, Abderrazzaq A; Lebecque, Serge S; Corvol, Harriet H; Abou Taam, Rola R; Houdouin, Véronique V; Bardel, Claire C; Roy, Pascal P; Devouassoux, Gilles G; Cottin, Vincent V; Seve, Pascal P; Bernaudin, Jean-François JF; Lim, Clarice X CX; Weichhart, Thomas T; Valeyre, Dominique D; Pacheco, Yves Y; Clement, Annick A; Nathan, Nadia N; ,

Publication Date: 2018-03-06

Variant appearance in text: APOBEC3H: 534G>C; Glu178Asp; rs139302

PubMed Link: 29510755

Variant Present in the following documents:

• 12920_2018_338_MOESM6_ESM.xlsx, sheet 3

View BVdb publication page

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Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples.

Oncotarget

Ma, Shiyong S; Menon, Ranjeeta R; Poulos, Rebecca C RC; Wong, Jason W H JWH

Publication Date: 2017-11-10

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 29221171

Variant Present in the following documents:

• oncotarget-08-95841-s002.xlsx, sheet 4

View BVdb publication page

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APOBEC3A is an oral cancer prognostic biomarker in Taiwanese carriers of an APOBEC deletion polymorphism.

Nature Communications

Chen, Ting-Wen TW; Lee, Chi-Ching CC; Liu, Hsuan H; Wu, Chi-Sheng CS; Pickering, Curtis R CR; Huang, Po-Jung PJ; Wang, Jing J; Chang, Ian Yi-Feng IY; Yeh, Yuan-Ming YM; Chen, Chih-De CD; Li, Hsin-Pai HP; Luo, Ji-Dung JD; Tan, Bertrand Chin-Ming BC; Chan, Timothy En Haw TEH; Hsueh, Chuen C; Chu, Lichieh Julie LJ; Chen, Yi-Ting YT; Zhang, Bing B; Yang, Chia-Yu CY; Wu, Chih-Ching CC; Hsu, Chia-Wei CW; See, Lai-Chu LC; Tang, Petrus P; Yu, Jau-Song JS; Liao, Wei-Chao WC; Chiang, Wei-Fan WF; Rodriguez, Henry H; Myers, Jeffrey N JN; Chang, Kai-Ping KP; Chang, Yu-Sun YS

Publication Date: 2017-09-06

Variant appearance in text: rs139302

PubMed Link: 28878238

Variant Present in the following documents:

• 41467_2017_493_MOESM10_ESM.pdf

View BVdb publication page

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Whole-exome sequencing analysis of Waardenburg syndrome in a Chinese family.

Human Genome Variation

Chen, Dezhong D; Zhao, Na N; Wang, Jing J; Li, Zhuoyu Z; Wu, Changxin C; Fu, Jie J; Xiao, Han H

Publication Date: 2017

Variant appearance in text: rs139302

PubMed Link: 28690861

Variant Present in the following documents:

• hgv201727-s1.xls, sheet 1

View BVdb publication page

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The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis.

Nature Communications

Starrett, Gabriel J GJ; Luengas, Elizabeth M EM; McCann, Jennifer L JL; Ebrahimi, Diako D; Temiz, Nuri A NA; Love, Robin P RP; Feng, Yuqing Y; Adolph, Madison B MB; Chelico, Linda L; Law, Emily K EK; Carpenter, Michael A MA; Harris, Reuben S RS

Publication Date: 2016-09-21

Variant appearance in text: rs139302

PubMed Link: 27650891

Variant Present in the following documents:

• ncomms12918.pdf

View BVdb publication page

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EWSR1/ELF5 induces acute myeloid leukemia by inhibiting p53/p21 pathway.

Cancer Science

Endo, Akifumi A; Tomizawa, Daisuke D; Aoki, Yuki Y; Morio, Tomohiro T; Mizutani, Shuki S; Takagi, Masatoshi M

Publication Date: 2016-12

Variant appearance in text: APOBEC3H: Glu178Asp

PubMed Link: 27627705

Variant Present in the following documents:

• CAS-107-1745-s003.xlsx, sheet 1

View BVdb publication page

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APOBEC3 proteins can copackage and comutate HIV-1 genomes.

Nucleic Acids Research

Desimmie, Belete A BA; Burdick, Ryan C RC; Izumi, Taisuke T; Doi, Hibiki H; Shao, Wei W; Alvord, W Gregory WG; Sato, Kei K; Koyanagi, Yoshio Y; Jones, Sara S; Wilson, Eleanor E; Hill, Shawn S; Maldarelli, Frank F; Hu, Wei-Shau WS; Pathak, Vinay K VK

Publication Date: 2016-09-19

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 27439715

Variant Present in the following documents:

• Main text
• gkw653.pdf

View BVdb publication page

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Reproducible Analysis of Post-Translational Modifications in Proteomes--Application to Human Mutations.

Plos One

Holehouse, Alex S AS; Naegle, Kristen M KM

Publication Date: 2015

Variant appearance in text: rs139302

PubMed Link: 26659599

Variant Present in the following documents:

• pone.0144692.s002.xlsx, sheet 1

View BVdb publication page

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Generation of a High Number of Healthy Erythroid Cells from Gene-Edited Pyruvate Kinase Deficiency Patient-Specific Induced Pluripotent Stem Cells.

Stem Cell Reports

Garate, Zita Z; Quintana-Bustamante, Oscar O; Crane, Ana M AM; Olivier, Emmanuel E; Poirot, Laurent L; Galetto, Roman R; Kosinski, Penelope P; Hill, Collin C; Kung, Charles C; Agirre, Xabi X; Orman, Israel I; Cerrato, Laura L; Alberquilla, Omaira O; Rodriguez-Fornes, Fatima F; Fusaki, Noemi N; Garcia-Sanchez, Felix F; Maia, Tabita M TM; Ribeiro, Maria L ML; Sevilla, Julian J; Prosper, Felipe F; Jin, Shengfang S; Mountford, Joanne J; Guenechea, Guillermo G; Gouble, Agnes A; Bueren, Juan A JA; Davis, Brian R BR; Segovia, Jose C JC

Publication Date: 2015-12-08

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 26549847

Variant Present in the following documents:

• mmc3.xlsx, sheet 3
• mmc3.xlsx, sheet 2
• mmc3.xlsx, sheet 1

View BVdb publication page

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Natural Polymorphisms and Oligomerization of Human APOBEC3H Contribute to Single-stranded DNA Scanning Ability.

The Journal Of Biological Chemistry

Feng, Yuqing Y; Love, Robin P RP; Ara, Anjuman A; Baig, Tayyba T TT; Adolph, Madison B MB; Chelico, Linda L

Publication Date: 2015-11-06

Variant appearance in text: N/A

PubMed Link: 26396192

Variant Present in the following documents:

View BVdb publication page

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Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes.

Oncotarget

Keerthikumar, Shivakumar S; Gangoda, Lahiru L; Liem, Michael M; Fonseka, Pamali P; Atukorala, Ishara I; Ozcitti, Cemil C; Mechler, Adam A; Adda, Christopher G CG; Ang, Ching-Seng CS; Mathivanan, Suresh S

Publication Date: 2015-06-20

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 25944692

Variant Present in the following documents:

• oncotarget-06-15375-s005.xlsx, sheet 2

View BVdb publication page

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Exome sequencing of case-unaffected-parents trios reveals recessive and de novo genetic variants in sporadic ALS.

Scientific Reports

Steinberg, Karyn Meltz KM; Yu, Bing B; Koboldt, Daniel C DC; Mardis, Elaine R ER; Pamphlett, Roger R

Publication Date: 2015-03-16

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 25773295

Variant Present in the following documents:

• srep09124-s2.xls, sheet 1

View BVdb publication page

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Natural polymorphisms in human APOBEC3H and HIV-1 Vif combine in primary T lymphocytes to affect viral G-to-A mutation levels and infectivity.

Plos Genetics

Refsland, Eric W EW; Hultquist, Judd F JF; Luengas, Elizabeth M EM; Ikeda, Terumasa T; Shaban, Nadine M NM; Law, Emily K EK; Brown, William L WL; Reilly, Cavan C; Emerman, Michael M; Harris, Reuben S RS

Publication Date: 2014-11

Variant appearance in text: rs139302

PubMed Link: 25411794

Variant Present in the following documents:

• Main text
• pgen.1004761.pdf

View BVdb publication page

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Whole-genome sequencing of the world's oldest people.

Plos One

Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK

Publication Date: 2014

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 25390934

Variant Present in the following documents:

• pone.0112430.s004.xlsx, sheet 1

View BVdb publication page

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Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection.

Plos Pathogens

Kim, Eun-Young EY; Lorenzo-Redondo, Ramon R; Little, Susan J SJ; Chung, Yoon-Seok YS; Phalora, Prabhjeet K PK; Maljkovic Berry, Irina I; Archer, John J; Penugonda, Sudhir S; Fischer, Will W; Richman, Douglas D DD; Bhattacharya, Tanmoy T; Malim, Michael H MH; Wolinsky, Steven M SM

Publication Date: 2014-07

Variant appearance in text: APOBEC3H: E178D

PubMed Link: 25080100

Variant Present in the following documents:

• Main text
• ppat.1004281.pdf

View BVdb publication page

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Assessment of computational methods for predicting the effects of missense mutations in human cancers.

Bmc Genomics

Gnad, Florian F; Baucom, Albion A; Mukhyala, Kiran K; Manning, Gerard G; Zhang, Zemin Z

Publication Date: 2013

Variant appearance in text: rs139302

PubMed Link: 23819521

Variant Present in the following documents:

• 1471-2164-14-S3-S7-S1.xlsx, sheet 2

View BVdb publication page

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Identification and antiviral activity of common polymorphisms in the APOBEC3 locus in human populations.

Virology

Duggal, Nisha K NK; Fu, Wenqing W; Akey, Joshua M JM; Emerman, Michael M

Publication Date: 2013-09-01

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 23755966

Variant Present in the following documents:

• Main text

View BVdb publication page

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The resistance of human APOBEC3H to HIV-1 NL4-3 molecular clone is determined by a single amino acid in Vif.

Plos One

Ooms, Marcel M; Letko, Michael M; Binka, Mawuena M; Simon, Viviana V

Publication Date: 2013

Variant appearance in text: APOBEC3H: E178D

PubMed Link: 23469063

Variant Present in the following documents:

• Main text
• pone.0057744.pdf

View BVdb publication page

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Genetic variants in the host restriction factor APOBEC3G are associated with HIV-1-related disease progression and central nervous system impairment in children.

Journal Of Acquired Immune Deficiency Syndromes (1999)

Singh, Kumud K KK; Wang, Yan Y; Gray, Kathryn P KP; Farhad, Mona M; Brummel, Sean S; Fenton, Terence T; Trout, Rodney R; Spector, Stephen A SA

Publication Date: 2013-02-01

Variant appearance in text: N/A

PubMed Link: 23138837

Variant Present in the following documents:

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APOBEC3G restricts HIV-1 to a greater extent than APOBEC3F and APOBEC3DE in human primary CD4+ T cells and macrophages.

Journal Of Virology

Chaipan, Chawaree C; Smith, Jessica L JL; Hu, Wei-Shau WS; Pathak, Vinay K VK

Publication Date: 2013-01

Variant appearance in text: N/A

PubMed Link: 23097438

Variant Present in the following documents:

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Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity.

Journal Of Virology

Wang, Xiaojun X; Abudu, Aierken A; Son, Sungmo S; Dang, Ying Y; Venta, Patrick J PJ; Zheng, Yong-Hui YH

Publication Date: 2011-04

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 21270145

Variant Present in the following documents:

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APOBEC3H haplotypes and HIV-1 pro-viral vif DNA sequence diversity in early untreated human immunodeficiency virus-1 infection.

Human Immunology

Gourraud, P A PA; Karaouni, A A; Woo, J M JM; Schmidt, T T; Oksenberg, J R JR; Hecht, F M FM; Liegler, T J TJ; Barbour, J D JD

Publication Date: 2011-03

Variant appearance in text: rs139302

PubMed Link: 21167246

Variant Present in the following documents:

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The localization of APOBEC3H variants in HIV-1 virions determines their antiviral activity.

Journal Of Virology

Ooms, Marcel M; Majdak, Susan S; Seibert, Christopher W CW; Harari, Ariana A; Simon, Viviana V

Publication Date: 2010-08

Variant appearance in text: APOBEC3H: E178D

PubMed Link: 20519396

Variant Present in the following documents:

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A single amino acid difference in human APOBEC3H variants determines HIV-1 Vif sensitivity.

Journal Of Virology

Zhen, Anjie A; Wang, Tao T; Zhao, Ke K; Xiong, Yong Y; Yu, Xiao-Fang XF

Publication Date: 2010-02

Variant appearance in text: N/A

PubMed Link: 19939923

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Polymorphisms and splice variants influence the antiretroviral activity of human APOBEC3H.

Journal Of Virology

Harari, Ariana A; Ooms, Marcel M; Mulder, Lubbertus C F LC; Simon, Viviana V

Publication Date: 2009-01

Variant appearance in text: APOBEC3H: E178D; rs139302

PubMed Link: 18945781

Variant Present in the following documents:

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Sole copy of Z2-type human cytidine deaminase APOBEC3H has inhibitory activity against retrotransposons and HIV-1.

Faseb Journal : Official Publication Of The Federation Of American Societies For Experimental Biology

Tan, Lindi L; Sarkis, Phuong Thi Nguyen PT; Wang, Tao T; Tian, Chunjuan C; Yu, Xiao-Fang XF

Publication Date: 2009-01

Variant appearance in text: APOBEC3H: E178D

PubMed Link: 18827027

Variant Present in the following documents:

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Antiretroelement activity of APOBEC3H was lost twice in recent human evolution.

Cell Host & Microbe

OhAinle, Molly M; Kerns, Julie A JA; Li, Melody M H MM; Malik, Harmit S HS; Emerman, Michael M

Publication Date: 2008-09-11

Variant appearance in text: N/A

PubMed Link: 18779051

Variant Present in the following documents:

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