Publications:

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Rapid genomic surveillance of SARS-CoV-2 in a dense urban community of Kathmandu Valley using sewage samples.

Plos One

Napit, Rajindra R; Manandhar, Prajwol P; Chaudhary, Ashok A; Shrestha, Bishwo B; Poudel, Ajit A; Raut, Roji R; Pradhan, Saman S; Raut, Samita S; Rajbhandari, Pragun G PG; Gurung, Anupama A; Rajbhandari, Rajesh M RM; Dixit, Sameer M SM; Schwind, Jessica S JS; Johnson, Christine K CK; Mazet, Jonna K JK; Karmacharya, Dibesh B DB

Publication Date: 2023

Variant appearance in text: CP: Q57H

PubMed Link: 36996055

Variant Present in the following documents:

• pone.0283664.pdf

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Microbiome Analysis for Wastewater Surveillance during COVID-19.

Mbio

Brumfield, Kyle D KD; Leddy, Menu M; Usmani, Moiz M; Cotruvo, Joseph A JA; Tien, Ching-Tzone CT; Dorsey, Suzanne S; Graubics, Karlis K; Fanelli, Brian B; Zhou, Isaac I; Registe, Nathaniel N; Dadlani, Manoj M; Wimalarante, Malinda M; Jinasena, Dilini D; Abayagunawardena, Rushan R; Withanachchi, Chiran C; Huq, Anwar A; Jutla, Antarpreet A; Colwell, Rita R RR

Publication Date: 2022-08-30

Variant appearance in text: CP: Q57H

PubMed Link: 35726918

Variant Present in the following documents:

• mbio.00591-22.pdf

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SARS-CoV-2 Evolution and Immune Escape in Immunocompromised Patients.

The New England Journal Of Medicine

Scherer, Erin M EM; Babiker, Ahmed A; Adelman, Max W MW; Allman, Brent B; Key, Autum A; Kleinhenz, Jennifer M JM; Langsjoen, Rose M RM; Nguyen, Phuong-Vi PV; Onyechi, Ivy I; Sherman, Jacob D JD; Simon, Trevor W TW; Soloff, Hannah H; Tarabay, Jessica J; Varkey, Jay J; Webster, Andrew S AS; Weiskopf, Daniela D; Weissman, Daniel B DB; Xu, Yongxian Y; Waggoner, Jesse J JJ; Koelle, Katia K; Rouphael, Nadine N; Pouch, Stephanie M SM; Piantadosi, Anne A

Publication Date: 2022-06-23

Variant appearance in text: CP: Q57H

PubMed Link: 35675197

Variant Present in the following documents:

• NEJMc2202861_appendix.pdf

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Genomic Snapshot of SARS-CoV-2 in Migrants Entering Through Mediterranean Sea Routes.

Frontiers In Public Health

Grandi, Nicole N; Paglietti, Bianca B; Cusano, Roberto R; Ibba, Gabriele G; Lai, Vincenzo V; Piu, Claudia C; Angioj, Flavia F; Serra, Caterina C; Kelvin, David J DJ; Tramontano, Enzo E; Rubino, Salvatore S

Publication Date: 2022

Variant appearance in text: CP: Q57H

PubMed Link: 35309205

Variant Present in the following documents:

• Main text
• fpubh-10-846115.pdf

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Genomic surveillance of SARS-CoV-2 in the state of Delaware reveals tremendous genomic diversity.

Plos One

Franke, Karl R KR; Isett, Robert R; Robbins, Alan A; Paquette-Straub, Carrie C; Shapiro, Craig A CA; Lee, Mary M MM; Crowgey, Erin L EL

Publication Date: 2022

Variant appearance in text: CP: Q57H

PubMed Link: 35045124

Variant Present in the following documents:

• Main text
• pone.0262573.pdf

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Two-step fitness selection for intra-host variations in SARS-CoV-2.

Cell Reports

Li, Jiarui J; Du, Pengcheng P; Yang, Lijiang L; Zhang, Ju J; Song, Chuan C; Chen, Danying D; Song, Yangzi Y; Ding, Nan N; Hua, Mingxi M; Han, Kai K; Song, Rui R; Xie, Wen W; Chen, Zhihai Z; Wang, Xianbo X; Liu, Jingyuan J; Xu, Yanli Y; Gao, Guiju G; Wang, Qi Q; Pu, Lin L; Di, Lin L; Li, Jie J; Yue, Jinglin J; Han, Junyan J; Zhao, Xuesen X; Yan, Yonghong Y; Yu, Fengting F; Wu, Angela R AR; Zhang, Fujie F; Gao, Yi Qin YQ; Huang, Yanyi Y; Wang, Jianbin J; Zeng, Hui H; Chen, Chen C

Publication Date: 2022-01-11

Variant appearance in text: CP: Q57H

PubMed Link: 34982968

Variant Present in the following documents:

• main.pdf
• mmc3.pdf

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Monitoring the SPREAD of the SARS-CoV-2 lineage B.1.621 in Udine, Italy.

Journal Of Clinical Pathology

Mio, Catia C; Dal Secco, Chiara C; Marzinotto, Stefania S; Pipan, Corrado C; Sozio, Emanuela E; Tascini, Carlo C; Damante, Giuseppe G; Curcio, Francesco F

Publication Date: 2021-12-15

Variant appearance in text: CP: Gln57His

PubMed Link: 34911747

Variant Present in the following documents:

• Main text
• jclinpath-2021-207810.pdf

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Evolution of the SARS-CoV-2 genome and emergence of variants of concern.

Archives Of Virology

Safari, Iman I; Elahi, Elahe E

Publication Date: 2022-02

Variant appearance in text: CP: Gln57His

PubMed Link: 34846601

Variant Present in the following documents:

• Main text
• 705_2021_Article_5295.pdf

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SARS-CoV-2 Variants and Their Relevant Mutational Profiles: Update Summer 2021.

Microbiology Spectrum

Alkhatib, Mohammad M; Svicher, Valentina V; Salpini, Romina R; Ambrosio, Francesca Alessandra FA; Bellocchi, Maria Concetta MC; Carioti, Luca L; Piermatteo, Lorenzo L; Scutari, Rossana R; Costa, Giosuè G; Artese, Anna A; Alcaro, Stefano S; Shafer, Robert R; Ceccherini-Silberstein, Francesca F

Publication Date: 2021-11-17

Variant appearance in text: CP: Q57H

PubMed Link: 34787497

Variant Present in the following documents:

• spectrum.01096-21.pdf

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SARS-CoV-2 Variants and Their Relevant Mutational Profiles: Update Summer 2021.

Microbiology Spectrum

Alkhatib, Mohammad M; Svicher, Valentina V; Salpini, Romina R; Ambrosio, Francesca Alessandra FA; Bellocchi, Maria Concetta MC; Carioti, Luca L; Piermatteo, Lorenzo L; Scutari, Rossana R; Costa, Giosuè G; Artese, Anna A; Alcaro, Stefano S; Shafer, Robert R; Ceccherini-Silberstein, Francesca F

Publication Date: 2021-12-22

Variant appearance in text: CP: Q57H

PubMed Link: 34787497

Variant Present in the following documents:

• spectrum.01096-21.pdf

View BVdb publication page

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Temporal-Geographical Dispersion of SARS-CoV-2 Spike Glycoprotein Variant Lineages and Their Functional Prediction Using in Silico Approach.

Mbio

Boon, Siaw Shi SS; Xia, Chichao C; Wang, Maggie Haitian MH; Yip, Ka Lai KL; Luk, Ho Yin HY; Li, Sile S; Ng, Rita W Y RWY; Lai, Christopher K C CKC; Chan, Paul Kay Sheung PKS; Chen, Zigui Z

Publication Date: 2021-10-26

Variant appearance in text: CP: Q57H

PubMed Link: 34700382

Variant Present in the following documents:

• Main text
• mbio.02687-21.pdf

View BVdb publication page

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Wastewater SARS-CoV-2 monitoring as a community-level COVID-19 trend tracker and variants in Ohio, United States.

The Science Of The Total Environment

Ai, Yuehan Y; Davis, Angela A; Jones, Dan D; Lemeshow, Stanley S; Tu, Huolin H; He, Fan F; Ru, Peng P; Pan, Xiaokang X; Bohrerova, Zuzana Z; Lee, Jiyoung J

Publication Date: 2021-12-20

Variant appearance in text: CP: Q57H

PubMed Link: 34467932

Variant Present in the following documents:

• Main text
• main.pdf

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Novel Nested-Seq Approach for SARS-CoV-2 Real-Time Epidemiology and In-Depth Mutational Profiling in Wastewater.

International Journal Of Molecular Sciences

Avgeris, Margaritis M; Adamopoulos, Panagiotis G PG; Galani, Aikaterini A; Xagorari, Marieta M; Gourgiotis, Dimitrios D; Trougakos, Ioannis P IP; Voulgaris, Nikolaos N; Dimopoulos, Meletios-Athanasios MA; Thomaidis, Nikolaos S NS; Scorilas, Andreas A

Publication Date: 2021-08-07

Variant appearance in text: CP: Q57H

PubMed Link: 34445204

Variant Present in the following documents:

• ijms-22-08498.pdf

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The performance of the SARS-CoV-2 RT-PCR test as a tool for detecting SARS-CoV-2 infection in the population.

The Journal Of Infection

Stang, Andreas A; Robers, Johannes J; Schonert, Birte B; Jöckel, Karl-Heinz KH; Spelsberg, Angela A; Keil, Ulrich U; Cullen, Paul P

Publication Date: 2021-08

Variant appearance in text: CP: Q57H

PubMed Link: 34081958

Variant Present in the following documents:

• main.pdf

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Clinical efficacy of nitric oxide nasal spray (NONS) for the treatment of mild COVID-19 infection.

The Journal Of Infection

Winchester, Stephen S; John, Sarah S; Jabbar, Kashif K; John, Isaac I

Publication Date: 2021-08

Variant appearance in text: CP: Q57H

PubMed Link: 33992687

Variant Present in the following documents:

• main.pdf

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One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

González-Candelas, Fernando F; Shaw, Marie-Anne MA; Phan, Tung T; Kulkarni-Kale, Urmila U; Paraskevis, Dimitrios D; Luciani, Fabio F; Kimura, Hirokazu H; Sironi, Manuela M

Publication Date: 2021-08

Variant appearance in text: CP: Q57H

PubMed Link: 33915216

Variant Present in the following documents:

• Main text

View BVdb publication page

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Emergence and outcomes of the SARS-CoV-2 'Marseille-4' variant.

International Journal Of Infectious Diseases : Ijid : Official Publication Of The International Society For Infectious Diseases

Fournier, Pierre-Edouard PE; Colson, Philippe P; Levasseur, Anthony A; Devaux, Christian A CA; Gautret, Philippe P; Bedotto, Marielle M; Delerce, Jeremy J; Brechard, Ludivine L; Pinault, Lucile L; Lagier, Jean-Christophe JC; Fenollar, Florence F; Raoult, Didier D

Publication Date: 2021-05

Variant appearance in text: CP: Q57H

PubMed Link: 33785459

Variant Present in the following documents:

• main.pdf

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A hijack mechanism of Indian SARS-CoV-2 isolates for relapsing contemporary antiviral therapeutics.

Computers In Biology And Medicine

Prathiviraj, R R; Saranya, S S; Bharathi, M M; Chellapandi, P P

Publication Date: 2021-05

Variant appearance in text: CP: Q57H

PubMed Link: 33705994

Variant Present in the following documents:

• Main text
• main.pdf

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Characterizing genomic variants and mutations in SARS-CoV-2 proteins from Indian isolates.

Gene Reports

Das, Jayanta Kumar JK; Sengupta, Antara A; Choudhury, Pabitra Pal PP; Roy, Swarup S

Publication Date: 2021-12

Variant appearance in text: CP: Q57H

PubMed Link: 33623833

Variant Present in the following documents:

• Main text
• main.pdf

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Cardiovascular Complications Associated with COVID-19 and Potential Therapeutic~Strategies.

International Journal Of Molecular Sciences

Samidurai, Arun A; Das, Anindita A

Publication Date: 2020-09-16

Variant appearance in text: CP: Q57H

PubMed Link: 32947927

Variant Present in the following documents:

• Main text
• ijms-21-06790.pdf

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Cryo-EM structure of the SARS-CoV-2 3a ion channel in lipid nanodiscs.

Biorxiv : The Preprint Server For Biology

Kern, David M DM; Sorum, Ben B; Mali, Sonali S SS; Hoel, Christopher M CM; Sridharan, Savitha S; Remis, Jonathan P JP; Toso, Daniel B DB; Kotecha, Abhay A; Bautista, Diana M DM; Brohawn, Stephen G SG

Publication Date: 2021-01-26

Variant appearance in text: CP: Q57H

PubMed Link: 32587976

Variant Present in the following documents:

• NIHPP2020.06.17.156554-supplement-1.pdf

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Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.

Biorxiv : The Preprint Server For Biology

Butler, Daniel J DJ; Mozsary, Christopher C; Meydan, Cem C; Danko, David D; Foox, Jonathan J; Rosiene, Joel J; Shaiber, Alon A; Afshinnekoo, Ebrahim E; MacKay, Matthew M; Sedlazeck, Fritz J FJ; Ivanov, Nikolay A NA; Sierra, Maria M; Pohle, Diana D; Zietz, Michael M; Gisladottir, Undina U; Ramlall, Vijendra V; Westover, Craig D CD; Ryon, Krista K; Young, Benjamin B; Bhattacharya, Chandrima C; Ruggiero, Phyllis P; Langhorst, Bradley W BW; Tanner, Nathan N; Gawrys, Justyna J; Meleshko, Dmitry D; Xu, Dong D; Steel, Peter A D PAD; Shemesh, Amos J AJ; Xiang, Jenny J; Thierry-Mieg, Jean J; Thierry-Mieg, Danielle D; Schwartz, Robert E RE; Iftner, Angelika A; Bezdan, Daniela D; Sipley, John J; Cong, Lin L; Craney, Arryn A; Velu, Priya P; Melnick, Ari M AM; Hajirasouliha, Iman I; Horner, Stacy M SM; Iftner, Thomas T; Salvatore, Mirella M; Loda, Massimo M; Westblade, Lars F LF; Cushing, Melissa M; Levy, Shawn S; Wu, Shixiu S; Tatonetti, Nicholas N; Imielinski, Marcin M; Rennert, Hanna H; Mason, Christopher E CE

Publication Date: 2020-05-01

Variant appearance in text: CP: Gln57His

PubMed Link: 32511352

Variant Present in the following documents:

• Main text

View BVdb publication page

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Network Analysis of Protein Adaptation: Modeling the Functional Impact of Multiple Mutations.

Molecular Biology And Evolution

Beleva Guthrie, Violeta V; Masica, David L DL; Fraser, Andrew A; Federico, Joseph J; Fan, Yunfan Y; Camps, Manel M; Karchin, Rachel R

Publication Date: 2018-06-01

Variant appearance in text: CP: Q57H

PubMed Link: 29522102

Variant Present in the following documents:

• msy036.pdf

View BVdb publication page

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