Publications:

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Integrative pan-cancer genomic and transcriptomic analyses of refractory metastatic cancer.

Cancer Discovery

Pradat, Yoann Y; Viot, Julien J; Yurchenko, Andrey A AA; Gunbin, Konstantin K; Cerbone, Luigi L; Deloger, Marc M; Grisay, Guillaume G; Verlingue, Loic L; Scott, Veronique V; Padioleau, Ismael I; Panunzi, Leonardo L; Michiels, Stefan S; Hollebecque, Antoine A; Jules-Clement, Gerome G; Mezquita, Laura L; Laine, Antoine A; Loriot, Yohann Y; Besse, Benjamin B; Friboulet, Luc L; Andre, Fabrice F; Cournede, Paul-Henry PH; Gautheret, Daniel D; Nikolaev, Sergey I SI

Publication Date: 2023-03-02

Variant appearance in text: PIK3CA: His47Arg

PubMed Link: 36862804

Variant Present in the following documents:

• cd-22-0966_supplementary_tables_s1-s11_suppst1.xlsx, sheet 6

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Analysis of single-nucleotide polymorphisms in genes associated with triple-negative breast cancer.

Frontiers In Genetics

G, Vigneshwaran V; Hasan, Qurratulain Annie QA; Kumar, Rahul R; Eranki, Avinash A

Publication Date: 2022

Variant appearance in text: PIK3CA: H47R

PubMed Link: 36561320

Variant Present in the following documents:

• Table2.xlsx, sheet 5
• Table3.xlsx, sheet 1

View BVdb publication page

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Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria.

American Journal Of Human Genetics

Pejaver, Vikas V; Byrne, Alicia B AB; Feng, Bing-Jian BJ; Pagel, Kymberleigh A KA; Mooney, Sean D SD; Karchin, Rachel R; O'Donnell-Luria, Anne A; Harrison, Steven M SM; Tavtigian, Sean V SV; Greenblatt, Marc S MS; Biesecker, Leslie G LG; Radivojac, Predrag P; Brenner, Steven E SE; ,

Publication Date: 2022-12-01

Variant appearance in text: PIK3CA: H47R; rs190372148

PubMed Link: 36413997

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

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Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: PIK3CA: 140A>G

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Association of Diabetes Mellitus and Alcohol Abuse with Cancer: Molecular Mechanisms and Clinical Significance.

Cells

Lam, Bao Q BQ; Srivastava, Rashmi R; Morvant, Jason J; Shankar, Sharmila S; Srivastava, Rakesh K RK

Publication Date: 2021-11-08

Variant appearance in text: PI3K: His47Arg

PubMed Link: 34831299

Variant Present in the following documents:

• Main text
• cells-10-03077.pdf

View BVdb publication page

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Evaluation of Feature Selection Techniques for Breast Cancer Risk Prediction.

International Journal Of Environmental Research And Public Health

López, Nahúm Cueto NC; García-Ordás, María Teresa MT; Vitelli-Storelli, Facundo F; Fernández-Navarro, Pablo P; Palazuelos, Camilo C; Alaiz-Rodríguez, Rocío R

Publication Date: 2021-10-12

Variant appearance in text: rs190372148

PubMed Link: 34682416

Variant Present in the following documents:

• Main text
• ijerph-18-10670.pdf

View BVdb publication page

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Plasma ctDNA is a tumor tissue surrogate and enables clinical-genomic stratification of metastatic bladder cancer.

Nature Communications

Vandekerkhove, Gillian G; Lavoie, Jean-Michel JM; Annala, Matti M; Murtha, Andrew J AJ; Sundahl, Nora N; Walz, Simon S; Sano, Takeshi T; Taavitsainen, Sinja S; Ritch, Elie E; Fazli, Ladan L; Hurtado-Coll, Antonio A; Wang, Gang G; Nykter, Matti M; Black, Peter C PC; Todenhöfer, Tilman T; Ost, Piet P; Gibb, Ewan A EA; Chi, Kim N KN; Eigl, Bernhard J BJ; Wyatt, Alexander W AW

Publication Date: 2021-01-08

Variant appearance in text: PIK3CA: H47R

PubMed Link: 33420073

Variant Present in the following documents:

• 41467_2020_20493_MOESM3_ESM.xlsx, sheet 7

View BVdb publication page

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Germline variants in cancer genes in high-risk non-BRCA patients from Puerto Rico.

Scientific Reports

Dutil, Julie J; Teer, Jamie K JK; Golubeva, Volha V; Yoder, Sean S; Tong, Wei Lue WL; Arroyo, Nelly N; Karam, Rachid R; Echenique, Miguel M; Matta, Jaime L JL; Monteiro, Alvaro N AN

Publication Date: 2019-11-28

Variant appearance in text: PIK3CA: His47Arg; rs190372148

PubMed Link: 31780696

Variant Present in the following documents:

• Main text
• 41598_2019_Article_54170.pdf
• 41598_2019_54170_MOESM1_ESM.pdf

View BVdb publication page

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Identification of predictors of drug sensitivity using patient-derived models of esophageal squamous cell carcinoma.

Nature Communications

Su, Dan D; Zhang, Dadong D; Jin, Jiaoyue J; Ying, Lisha L; Han, Miao M; Chen, Kaiyan K; Li, Bin B; Wu, Junzhou J; Xie, Zhenghua Z; Zhang, Fanrong F; Lin, Yihui Y; Cheng, Guoping G; Li, Jing-Yu JY; Huang, Minran M; Wang, Jinchao J; Wang, Kailai K; Zhang, Jianjun J; Li, Fugen F; Xiong, Lei L; Futreal, Andrew A; Mao, Weimin W

Publication Date: 2019-11-07

Variant appearance in text: PIK3CA: 140A>G; H47R

PubMed Link: 31700061

Variant Present in the following documents:

• 41467_2019_12846_MOESM6_ESM.xlsx, sheet 1

View BVdb publication page

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Integrative analysis of genomic and transcriptomic characteristics associated with progression of aggressive thyroid cancer.

Nature Communications

Yoo, Seong-Keun SK; Song, Young Shin YS; Lee, Eun Kyung EK; Hwang, Jinha J; Kim, Hwan Hee HH; Jung, Gyeongseo G; Kim, Young A YA; Kim, Su-Jin SJ; Cho, Sun Wook SW; Won, Jae-Kyung JK; Chung, Eun-Jae EJ; Shin, Jong-Yeon JY; Lee, Kyu Eun KE; Kim, Jong-Il JI; Park, Young Joo YJ; Seo, Jeong-Sun JS

Publication Date: 2019-06-24

Variant appearance in text: PIK3CA: H47R

PubMed Link: 31235699

Variant Present in the following documents:

• 41467_2019_10680_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

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SMARCA4 loss is synthetic lethal with CDK4/6 inhibition in non-small cell lung cancer.

Nature Communications

Xue, Yibo Y; Meehan, Brian B; Fu, Zheng Z; Wang, Xue Qing D XQD; Fiset, Pierre Olivier PO; Rieker, Ralf R; Levins, Cameron C; Kong, Tim T; Zhu, Xianbing X; Morin, Geneviève G; Skerritt, Lashanda L; Herpel, Esther E; Venneti, Sriram S; Martinez, Daniel D; Judkins, Alexander R AR; Jung, Sungmi S; Camilleri-Broet, Sophie S; Gonzalez, Anne V AV; Guiot, Marie-Christine MC; Lockwood, William W WW; Spicer, Jonathan D JD; Agaimy, Abbas A; Pastor, William A WA; Dostie, Josée J; Rak, Janusz J; Foulkes, William D WD; Huang, Sidong S

Publication Date: 2019-02-04

Variant appearance in text: PIK3CA: 140A>G

PubMed Link: 30718506

Variant Present in the following documents:

• 41467_2019_8380_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

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Pan-urologic cancer genomic subtypes that transcend tissue of origin.

Nature Communications

Chen, Fengju F; Zhang, Yiqun Y; Bossé, Dominick D; Lalani, Aly-Khan A AA; Hakimi, A Ari AA; Hsieh, James J JJ; Choueiri, Toni K TK; Gibbons, Don L DL; Ittmann, Michael M; Creighton, Chad J CJ

Publication Date: 2017-08-04

Variant appearance in text: PIK3CA: 140A>G

PubMed Link: 28775315

Variant Present in the following documents:

• 41467_2017_289_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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