Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Bi-allelic mutation in SEC16B alters collagen trafficking and increases ER stress.
Embo Molecular Medicine
El-Gazzar, Ahmed A; Voraberger, Barbara B; Rauch, Frank F; Mairhofer, Mario M; Schmidt, Katy K; Guillemyn, Brecht B; Mitulović, Goran G; Reiterer, Veronika V; Haun, Margot M; Mayr, Michaela M MM; Mayr, Johannes A JA; Kimeswenger, Susanne S; Drews, Oliver O; Saraff, Vrinda V; Shaw, Nick N; Fratzl-Zelman, Nadja N; Symoens, Sofie S; Farhan, Hesso H; Högler, Wolfgang W
Publication Date: 2023-03-14
Variant appearance in text: AHSG: 743T>C; Met248Thr
Genetic studies of plasma analytes identify novel potential biomarkers for several complex traits.
Scientific Reports
Deming, Yuetiva Y; Xia, Jian J; Cai, Yefei Y; Lord, Jenny J; Del-Aguila, Jorge L JL; Fernandez, Maria Victoria MV; Carrell, David D; Black, Kathleen K; Budde, John J; Ma, ShengMei S; Saef, Benjamin B; Howells, Bill B; Bertelsen, Sarah S; Bailey, Matthew M; Ridge, Perry G PG; , ; Holtzman, David D; Morris, John C JC; Bales, Kelly K; Pickering, Eve H EH; Lee, Jin-Moo JM; Heitsch, Laura L; Kauwe, John J; Goate, Alison A; Piccio, Laura L; Cruchaga, Carlos C
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Personalized Dietary Recommendations Based on Lipid-Related Genetic Variants: A Systematic Review.
Frontiers In Nutrition
Pérez-Beltrán, Yolanda E YE; Rivera-Iñiguez, Ingrid I; Gonzalez-Becerra, Karina K; Pérez-Naitoh, Naomi N; Tovar, Juscelino J; Sáyago-Ayerdi, Sonia G SG; Mendivil, Edgar J EJ
Genetic Determinants of Serum Calcification Propensity and Cardiovascular Outcomes in the General Population.
Frontiers In Cardiovascular Medicine
de Haan, Amber A; Ahmadizar, Fariba F; van der Most, Peter J PJ; Thio, Chris H L CHL; Kamali, Zoha Z; Ani, Alireza A; Ghanbari, Mohsen M; Chaker, Layal L; van Meurs, Joyce J; Ikram, M Kamran MK; van Goor, Harry H; Bakker, Stephan J L SJL; van der Harst, Pim P; Snieder, Harold H; Kavousi, Maryam M; Pasch, Andreas A; Eijgelsheim, Mark M; de Borst, Martin H MH
Genetic polymorphisms as multi-biomarkers in severe acute respiratory syndrome (SARS) by coronavirus infection: A systematic review of candidate gene association studies.
Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases
Dos Santos, Ana Caroline Melo ACM; Dos Santos, Bárbara Rayssa Correia BRC; Dos Santos, Bruna Brandão BB; de Moura, Edilson Leite EL; Ferreira, Jean Moisés JM; Dos Santos, Luana Karen Correia LKC; Oliveira, Susana Paiva SP; Dias, Renise Bastos Farias RBF; Pereira E Silva, Aline Cristine AC; de Farias, Karol Fireman KF; de Souza Figueiredo, Elaine Virgínia Martins EVM
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: AHSG: 743T>C; M248T; rs4917
Multi-level evidence of an allelic hierarchy of USH2A variants in hearing, auditory processing and speech/language outcomes.
Communications Biology
Perrino, Peter A PA; Talbot, Lidiya L; Kirkland, Rose R; Hill, Amanda A; Rendall, Amanda R AR; Mountford, Hayley S HS; Taylor, Jenny J; , ; Buscarello, Alexzandrea N AN; Lahiri, Nayana N; Saggar, Anand A; Fitch, R Holly RH; Newbury, Dianne F DF
Introducing the first whole genomes of nationals from the United Arab Emirates.
Scientific Reports
AlSafar, Habiba S HS; Al-Ali, Mariam M; Elbait, Gihan Daw GD; Al-Maini, Mustafa H MH; Ruta, Dymitr D; Peramo, Braulio B; Henschel, Andreas A; Tay, Guan K GK
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.
Cell Death & Disease
Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D
X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family.
Scientific Reports
Khan, Muhammad Jaseem MJ; Pollock, Nijole N; Jiang, Huaiyang H; Castro, Carlos C; Nazli, Rubina R; Ahmed, Jawad J; Basit, Sulman S; Rajkovic, Aleksandar A; Yatsenko, Alexander N AN
Circulating Fetuin-A and Risk of Type 2 Diabetes: A Mendelian Randomization Analysis.
Diabetes
Kröger, Janine J; Meidtner, Karina K; Stefan, Norbert N; Guevara, Marcela M; Kerrison, Nicola D ND; Ardanaz, Eva E; Aune, Dagfinn D; Boeing, Heiner H; Dorronsoro, Miren M; Dow, Courtney C; Fagherazzi, Guy G; Franks, Paul W PW; Freisling, Heinz H; Gunter, Marc J MJ; Huerta, José María JM; Kaaks, Rudolf R; Key, Timothy J TJ; Khaw, Kay Tee KT; Krogh, Vittorio V; Kühn, Tilman T; Mancini, Francesca Romana FR; Mattiello, Amalia A; Nilsson, Peter M PM; Olsen, Anja A; Overvad, Kim K; Palli, Domenico D; Quirós, J Ramón JR; Rolandsson, Olov O; Sacerdote, Carlotta C; Sala, Núria N; Salamanca-Fernández, Elena E; Sluijs, Ivonne I; Spijkerman, Annemieke M W AMW; Tjonneland, Anne A; Tsilidis, Konstantinos K KK; Tumino, Rosario R; van der Schouw, Yvonne T YT; Forouhi, Nita G NG; Sharp, Stephen J SJ; Langenberg, Claudia C; Riboli, Elio E; Schulze, Matthias B MB; Wareham, Nicholas J NJ
Detection of genetic loci associated with plasma fetuin-A: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Human Molecular Genetics
Jensen, Majken K MK; Jensen, Richard A RA; Mukamal, Kenneth J KJ; Guo, Xiuqing X; Yao, Jie J; Sun, Qi Q; Cornelis, Marilyn M; Liu, Yongmei Y; Chen, Ming-Huei MH; Kizer, Jorge R JR; Djoussé, Luc L; Siscovick, David S DS; Psaty, Bruce M BM; Zmuda, Joseph M JM; Rotter, Jerome I JI; Garcia, Melissa M; Harris, Tamara T; Chen, Ida I; Goodarzi, Mark O MO; Nalls, Michael A MA; Keller, Margaux M; Arnold, Alice M AM; Newman, Anne B AB; Hoogeveen, Ron C RC; Rexrode, Kathryn M KM; Rimm, Eric B EB; Hu, Frank B FB; Ramachandran, Vasan S VS; Katz, Ronit R; Pankow, James S JS; Ix, Joachim H JH
Analysis of Whole Exome Sequencing with Cardiometabolic Traits Using Family-Based Linkage and Association in the IRAS Family Study.
Annals Of Human Genetics
Tabb, Keri L KL; Hellwege, Jacklyn N JN; Palmer, Nicholette D ND; Dimitrov, Latchezar L; Sajuthi, Satria S; Taylor, Kent D KD; Ng, Maggie C Y MC; Hawkins, Gregory A GA; Chen, Yii-der Ida YI; Brown, W Mark WM; McWilliams, David D; Williams, Adrienne A; Lorenzo, Carlos C; Norris, Jill M JM; Long, Jirong J; Rotter, Jerome I JI; Curran, Joanne E JE; Blangero, John J; Wagenknecht, Lynne E LE; Langefeld, Carl D CD; Bowden, Donald W DW
Three-dimensional modelling identifies novel genetic dependencies associated with breast cancer progression in the isogenic MCF10 model.
The Journal Of Pathology
Maguire, Sarah L SL; Peck, Barrie B; Wai, Patty T PT; Campbell, James J; Barker, Holly H; Gulati, Aditi A; Daley, Frances F; Vyse, Simon S; Huang, Paul P; Lord, Christopher J CJ; Farnie, Gillian G; Brennan, Keith K; Natrajan, Rachael R
Human Fetuin-A Rs4918 Polymorphism and its Association with Obesity in Healthy Persons and in Patients with Myocardial Infarction in Two Hungarian Cohorts.
Medical Science Monitor : International Medical Journal Of Experimental And Clinical Research
Temesszentandrási, György G; Vörös, Krisztián K; Márkus, Bernadett B; Böröcz, Zoltán Z; Kaszás, Edit E; Prohászka, Zoltán Z; Falus, András A; Cseh, Károly K; Kalabay, László L
Clonal relationships between lobular carcinoma in situ and other breast malignancies.
Breast Cancer Research : Bcr
Begg, Colin B CB; Ostrovnaya, Irina I; Carniello, Jose V Scarpa JV; Sakr, Rita A RA; Giri, Dilip D; Towers, Russell R; Schizas, Michail M; De Brot, Marina M; Andrade, Victor P VP; Mauguen, Audrey A; Seshan, Venkatraman E VE; King, Tari A TA
PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.
Plos Computational Biology
Bendl, Jaroslav J; Musil, Miloš M; Štourač, Jan J; Zendulka, Jaroslav J; Damborský, Jiří J; Brezovský, Jan J
Generation of a High Number of Healthy Erythroid Cells from Gene-Edited Pyruvate Kinase Deficiency Patient-Specific Induced Pluripotent Stem Cells.
Stem Cell Reports
Garate, Zita Z; Quintana-Bustamante, Oscar O; Crane, Ana M AM; Olivier, Emmanuel E; Poirot, Laurent L; Galetto, Roman R; Kosinski, Penelope P; Hill, Collin C; Kung, Charles C; Agirre, Xabi X; Orman, Israel I; Cerrato, Laura L; Alberquilla, Omaira O; Rodriguez-Fornes, Fatima F; Fusaki, Noemi N; Garcia-Sanchez, Felix F; Maia, Tabita M TM; Ribeiro, Maria L ML; Sevilla, Julian J; Prosper, Felipe F; Jin, Shengfang S; Mountford, Joanne J; Guenechea, Guillermo G; Gouble, Agnes A; Bueren, Juan A JA; Davis, Brian R BR; Segovia, Jose C JC