Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 283T>A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for Whole-Genome Sequence Data Analysis.

Frontiers In Bioinformatics

Swargam, Sandeep S; Kumari, Indu I; Kumar, Amit A; Pradhan, Dibyabhaba D; Alam, Anwar A; Singh, Harpreet H; Jain, Anuja A; Devi, Kangjam Rekha KR; Trivedi, Vishal V; Sarma, Jogesh J; Hanif, Mahmud M; Narain, Kanwar K; Ehtesham, Nasreen Zafar NZ; Hasnain, Seyed Ehtesham SE; Ahmad, Shandar S

Publication Date: 2021

Variant appearance in text: GC: S95T

PubMed Link: 36303799

Variant Present in the following documents:

• Main text
• fbinf-01-805338.pdf

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Genome analysis of a new sulphur disproportionating species Thermosulfurimonas strain F29 and comparative genomics of sulfur-disproportionating bacteria from marine hydrothermal vents.

Microbial Genomics

Allioux, Maxime M; Yvenou, Stéven S; Godfroy, Anne A; Shao, Zongze Z; Jebbar, Mohamed M; Alain, Karine K

Publication Date: 2022-09

Variant appearance in text: GC: S95T

PubMed Link: 36136081

Variant Present in the following documents:

• mgen-8-865.pdf

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Genetic Potential of Dissulfurimicrobium hydrothermale, an Obligate Sulfur-Disproportionating Thermophilic Microorganism.

Microorganisms

Yvenou, Stéven S; Allioux, Maxime M; Slobodkin, Alexander A; Slobodkina, Galina G; Jebbar, Mohamed M; Alain, Karine K

Publication Date: 2021-12-28

Variant appearance in text: GC: S95T

PubMed Link: 35056509

Variant Present in the following documents:

• microorganisms-10-00060.pdf

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Treat Me Well or Will Resist: Uptake of Mobile Genetic Elements Determine the Resistome of Corynebacterium striatum.

International Journal Of Molecular Sciences

Leyton, Benjamin B; Ramos, Juliana Nunes JN; Baio, Paulo Victor Pereira PVP; Veras, João Flávio Carneiro JFC; Souza, Cassius C; Burkovski, Andreas A; Mattos-Guaraldi, Ana Luíza AL; Vieira, Verônica Viana VV; Abanto Marin, Michel M

Publication Date: 2021-07-13

Variant appearance in text: GC: Ser95Thr

PubMed Link: 34299116

Variant Present in the following documents:

• Main text
• ijms-22-07499.pdf

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Whole-Genome Sequence of Drug-Resistant Mycobacterium tuberculosis Strain S7, Isolated from a Patient with Pulmonary Tuberculosis.

Microbiology Resource Announcements

Meher, Aparna A; Guha, Hritusree H; Pemmadi, Raghuveer Varma RV; Akram, Subia S; Faruquee, Hossain M HM; Arya, Rakesh R; Ghosh, Hiren H; Nikam, Chaitali C; Saha, Sourav S; Das, Ranjit R; Dasgupta, Arunabha A; Goswami, Bidhan B; Gupta, Dinesh D; Das, Anjan A; Nanda, Ranjan Kumar RK

Publication Date: 2020-04-23

Variant appearance in text: GC: S95T

PubMed Link: 32327513

Variant Present in the following documents:

• Main text
• MRA.01567-19.pdf

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Rapid Microarray-Based Detection of Rifampin, Isoniazid, and Fluoroquinolone Resistance in Mycobacterium tuberculosis by Use of a Single Cartridge.

Journal Of Clinical Microbiology

Havlicek, Juliane J; Dachsel, Beatrice B; Slickers, Peter P; Andres, Sönke S; Beckert, Patrick P; Feuerriegel, Silke S; Niemann, Stefan S; Merker, Matthias M; Labugger, Ines I

Publication Date: 2018-02

Variant appearance in text: GC: Ser95Thr

PubMed Link: 29212699

Variant Present in the following documents:

• Main text
• e01249-17.pdf

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Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.

Plos Neglected Tropical Diseases

Carnes, Jason J; Anupama, Atashi A; Balmer, Oliver O; Jackson, Andrew A; Lewis, Michael M; Brown, Rob R; Cestari, Igor I; Desquesnes, Marc M; Gendrin, Claire C; Hertz-Fowler, Christiane C; Imamura, Hideo H; Ivens, Alasdair A; Kořený, Luděk L; Lai, De-Hua DH; MacLeod, Annette A; McDermott, Suzanne M SM; Merritt, Chris C; Monnerat, Severine S; Moon, Wonjong W; Myler, Peter P; Phan, Isabelle I; Ramasamy, Gowthaman G; Sivam, Dhileep D; Lun, Zhao-Rong ZR; Lukeš, Julius J; Stuart, Ken K; Schnaufer, Achim A

Publication Date: 2015-01

Variant appearance in text: GC: Ser95Thr

PubMed Link: 25568942

Variant Present in the following documents:

• pntd.0003404.s019.xlsx, sheet 1

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Evidence of Clonal Expansion in the Genome of a Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate from Peru.

Genome Announcements

Galarza, M M; Tarazona, D D; Borda, V V; Agapito, J C JC; Guio, H H

Publication Date: 2014-02-27

Variant appearance in text: GC: S95T

PubMed Link: 24578270

Variant Present in the following documents:

• Main text
• e00089-14.pdf

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