Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 279C>G

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.

Nature Genetics

Zhou, Xueya X; Feliciano, Pamela P; Shu, Chang C; Wang, Tianyun T; Astrovskaya, Irina I; Hall, Jacob B JB; Obiajulu, Joseph U JU; Wright, Jessica R JR; Murali, Shwetha C SC; Xu, Simon Xuming SX; Brueggeman, Leo L; Thomas, Taylor R TR; Marchenko, Olena O; Fleisch, Christopher C; Barns, Sarah D SD; Snyder, LeeAnne Green LG; Han, Bing B; Chang, Timothy S TS; Turner, Tychele N TN; Harvey, William T WT; Nishida, Andrew A; O'Roak, Brian J BJ; Geschwind, Daniel H DH; , ; Michaelson, Jacob J JJ; Volfovsky, Natalia N; Eichler, Evan E EE; Shen, Yufeng Y; Chung, Wendy K WK

Publication Date: 2022-09

Variant appearance in text: GC: 279C>G

PubMed Link: 35982159

Variant Present in the following documents:

• 41588_2022_1148_MOESM7_ESM.xlsx, sheet 1

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Molecular epidemiology and phylogenomic analysis of Mycobacterium abscessus clinical isolates in an Asian population.

Microbial Genomics

Chew, Ka Lip KL; Octavia, Sophie S; Jureen, Roland R; Ng, Oon Tek OT; Marimuthu, Kalisvar K; Lin, Raymond Tzer Pin RTP; Teo, Jeanette W P JWP

Publication Date: 2021-11

Variant appearance in text: GC: 279C>G

PubMed Link: 34845980

Variant Present in the following documents:

• mgen-7-0708-s001.xlsx, sheet 2

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: GC: 279C>G

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.

Communications Biology

Machado, Henrique H; Seif, Yara Y; Sakoulas, George G; Olson, Connor A CA; Hefner, Ying Y; Anand, Amitesh A; Jones, Ying Z YZ; Szubin, Richard R; Palsson, Bernhard O BO; Nizet, Victor V; Feist, Adam M AM

Publication Date: 2021-06-25

Variant appearance in text: GC: A93A

PubMed Link: 34172889

Variant Present in the following documents:

• Main text

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Designing a multi-epitope vaccine against Mycobacteroides abscessus by pangenome-reverse vaccinology.

Scientific Reports

Dar, Hamza Arshad HA; Ismail, Saba S; Waheed, Yasir Y; Ahmad, Sajjad S; Jamil, Zubia Z; Aziz, Hafsa H; Hetta, Helal F HF; Muhammad, Khalid K

Publication Date: 2021-05-27

Variant appearance in text: GC: A93A

PubMed Link: 34045649

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity.

Plos Pathogens

Lood, Cédric C; Peeters, Charlotte C; Lamy-Besnier, Quentin Q; Wagemans, Jeroen J; De Vos, Daniel D; Proesmans, Marijke M; Pirnay, Jean-Paul JP; Echahidi, Fedoua F; Piérard, Denis D; Thimmesch, Matthieu M; Boeras, Anca A; Lagrou, Katrien K; De Canck, Evelien E; De Wachter, Elke E; van Noort, Vera V; Lavigne, Rob R; Vandamme, Peter P

Publication Date: 2021-03

Variant appearance in text: GC: 279C>G

PubMed Link: 33720991

Variant Present in the following documents:

• ppat.1009418.s005.xlsx, sheet 9

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Degradation of benzo[a]pyrene by halophilic bacterial strain Staphylococcus haemoliticus strain 10SBZ1A.

Plos One

Nzila, Alexis A; Musa, Musa M MM; Sankara, Saravanan S; Al-Momani, Marwan M; Xiang, Lei L; Li, Qing X QX

Publication Date: 2021

Variant appearance in text: GC: A93A

PubMed Link: 33630955

Variant Present in the following documents:

• Main text

View BVdb publication page

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: GC: Ala93Ala

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

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ScanITD: Detecting internal tandem duplication with robust variant allele frequency estimation.

Gigascience

Wang, Ting-You TY; Yang, Rendong R

Publication Date: 2020-08-01

Variant appearance in text: GC: A93A

PubMed Link: 32852038

Variant Present in the following documents:

• Main text

View BVdb publication page

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High-quality genome sequence of white lupin provides insight into soil exploration and seed quality.

Nature Communications

Hufnagel, Bárbara B; Marques, André A; Soriano, Alexandre A; Marquès, Laurence L; Divol, Fanchon F; Doumas, Patrick P; Sallet, Erika E; Mancinotti, Davide D; Carrere, Sébastien S; Marande, William W; Arribat, Sandrine S; Keller, Jean J; Huneau, Cécile C; Blein, Thomas T; Aimé, Delphine D; Laguerre, Malika M; Taylor, Jemma J; Schubert, Veit V; Nelson, Matthew M; Geu-Flores, Fernando F; Crespi, Martin M; Gallardo, Karine K; Delaux, Pierre-Marc PM; Salse, Jérôme J; Bergès, Hélène H; Guyot, Romain R; Gouzy, Jérôme J; Péret, Benjamin B

Publication Date: 2020-01-24

Variant appearance in text: GC: A93A

PubMed Link: 31980615

Variant Present in the following documents:

• Main text

View BVdb publication page

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A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.

Cell

Silpe, Justin E JE; Bassler, Bonnie L BL

Publication Date: 2019-01-10

Variant appearance in text: GC: A93A

PubMed Link: 30554875

Variant Present in the following documents:

• Main text

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Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum.

Oncotarget

Greenawalt, Danielle M DM; Liang, Winnie S WS; Saif, Sakina S; Johnson, Justin J; Todorov, Petar P; Dulak, Austin A; Enriquez, Daniel D; Halperin, Rebecca R; Ahmed, Ambar A; Saveliev, Vladislav V; Carpten, John J; Craig, David D; Barrett, J Carl JC; Dougherty, Brian B; Zinda, Michael M; Fawell, Stephen S; Dry, Jonathan R JR; Byth, Kate K

Publication Date: 2017-11-21

Variant appearance in text: GC: 279C>G

PubMed Link: 29245897

Variant Present in the following documents:

• oncotarget-08-99237-s003.xlsx, sheet 1

View BVdb publication page

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