Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 254A>C; D85A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Neurodegeneration Risk Factor, EIF2AK3 (PERK), Influences Tau Protein Aggregation.

The Journal Of Biological Chemistry

Park, Goonho G; Xu, Ke K; Chea, Leon L; Kim, Kyle K; Safarta, Lance L; Song, Keon-Hyoung KH; Wu, Jian J; Park, Soyoung S; Min, Hyejung H; Hiramatsu, Nobuhiko N; Han, Jaeseok J; Lin, Jonathan H JH

Publication Date: 2022-12-20

Variant appearance in text: GC: 254A>C

PubMed Link: 36563857

Variant Present in the following documents:

• mmc2.xlsx, sheet 1

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Genomic evolution towards azole resistance in Candida glabrata clinical isolates unveils the importance of CgHxt4/6/7 in azole accumulation.

Communications Biology

Galocha, Mónica M; Viana, Romeu R; Pais, Pedro P; Silva-Dias, Ana A; Cavalheiro, Mafalda M; Miranda, Isabel M IM; Van Ende, Mieke M; Souza, Caio S CS; Costa, Catarina C; Branco, Joana J; Soares, Cláudio M CM; Van Dijck, Patrick P; Rodrigues, Acácio G AG; Teixeira, Miguel C MC

Publication Date: 2022-10-21

Variant appearance in text: GC: 254A>C

PubMed Link: 36271293

Variant Present in the following documents:

• 42003_2022_4087_MOESM4_ESM.xlsx, sheet 4

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Inclusion of cGAMP within virus-like particle vaccines enhances their immunogenicity.

Embo Reports

Chauveau, Lise L; Bridgeman, Anne A; Tan, Tiong K TK; Beveridge, Ryan R; Frost, Joe N JN; Rijal, Pramila P; Pedroza-Pacheco, Isabela I; Partridge, Thomas T; Gilbert-Jaramillo, Javier J; Knight, Michael L ML; Liu, Xu X; Russell, Rebecca A RA; Borrow, Persephone P; Drakesmith, Hal H; Townsend, Alain R AR; Rehwinkel, Jan J

Publication Date: 2021-08-04

Variant appearance in text: GC: D85A

PubMed Link: 34142428

Variant Present in the following documents:

• EMBR-22-e52447.pdf

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Cannabinoid receptor 1 signalling modulates stress susceptibility and microglial responses to chronic social defeat stress.

Translational Psychiatry

Beins, Eva C EC; Beiert, Thomas T; Jenniches, Imke I; Hansen, Jan N JN; Leidmaa, Este E; Schrickel, Jan W JW; Zimmer, Andreas A

Publication Date: 2021-03-15

Variant appearance in text: GC: D85A

PubMed Link: 33723234

Variant Present in the following documents:

• Main text

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Apoptosis in the fetal testis eliminates developmentally defective germ cell clones.

Nature Cell Biology

Nguyen, Daniel H DH; Soygur, Bikem B; Peng, Su-Ping SP; Malki, Safia S; Hu, Guang G; Laird, Diana J DJ

Publication Date: 2020-12

Variant appearance in text: GC: D85A

PubMed Link: 33199844

Variant Present in the following documents:

• Main text

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A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins.

Journal Of Medicinal Chemistry

Povedano, Juan Manuel JM; Rallabandi, Rameshu R; Bai, Xin X; Ye, Xuecheng X; Liou, Joel J; Chen, Hong H; Kim, Jiwoong J; Xie, Yang Y; Posner, Bruce B; Rice, Luke L; De Brabander, Jef K JK; McFadden, David G DG

Publication Date: 2020-11-25

Variant appearance in text: GC: 254A>C

PubMed Link: 33180487

Variant Present in the following documents:

• jm0c01482_si_002.xlsx, sheet 1

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Species-Specific Recognition of Sulfolobales Mediated by UV-Inducible Pili and S-Layer Glycosylation Patterns.

Mbio

van Wolferen, Marleen M; Shajahan, Asif A; Heinrich, Kristina K; Brenzinger, Susanne S; Black, Ian M IM; Wagner, Alexander A; Briegel, Ariane A; Azadi, Parastoo P; Albers, Sonja-Verena SV

Publication Date: 2020-03-10

Variant appearance in text: GC: D85A

PubMed Link: 32156822

Variant Present in the following documents:

• Main text

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Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass.

Chemical Science

Fujihashi, Masahiro M; Sato, Tsutomu T; Tanaka, Yuma Y; Yamamoto, Daisuke D; Nishi, Tomoyuki T; Ueda, Daijiro D; Murakami, Mizuki M; Yasuno, Yoko Y; Sekihara, Ai A; Fuku, Kazuma K; Shinada, Tetsuro T; Miki, Kunio K

Publication Date: 2018-04-21

Variant appearance in text: GC: D85A

PubMed Link: 29780507

Variant Present in the following documents:

• SC-009-C8SC00289D-s001.pdf

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Human gastric cancer modelling using organoids.

Gut

Seidlitz, Therese T; Merker, Sebastian R SR; Rothe, Alexander A; Zakrzewski, Falk F; von Neubeck, Cläre C; Grützmann, Konrad K; Sommer, Ulrich U; Schweitzer, Christine C; Schölch, Sebastian S; Uhlemann, Heike H; Gaebler, Anne-Marlene AM; Werner, Kristin K; Krause, Mechthild M; Baretton, Gustavo B GB; Welsch, Thilo T; Koo, Bon-Kyoung BK; Aust, Daniela E DE; Klink, Barbara B; Weitz, Jürgen J; Stange, Daniel E DE

Publication Date: 2019-02

Variant appearance in text: GC: Asp85Ala

PubMed Link: 29703791

Variant Present in the following documents:

• gutjnl-2017-314549supp010.xlsx, sheet 3

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Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: GC: D85A

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2

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A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: GC: D85A

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

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Evidence for positive selection on the leptin gene in Cetacea and Pinnipedia.

Plos One

Yu, Li L; Jin, Wei W; Zhang, Xin X; Wang, Ding D; Zheng, Jin-song JS; Yang, Guang G; Xu, Shi-xia SX; Cho, Soochin S; Zhang, Ya-ping YP

Publication Date: 2011

Variant appearance in text: GC: D85A

PubMed Link: 22046310

Variant Present in the following documents:

• pone.0026579.pdf

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The structure of the minimal relaxase domain of MobA at 2.1 A resolution.

Journal Of Molecular Biology

Monzingo, Arthur F AF; Ozburn, Angela A; Xia, Shuangluo S; Meyer, Richard J RJ; Robertus, Jon D JD

Publication Date: 2007-02-09

Variant appearance in text: GC: D85A

PubMed Link: 17157875

Variant Present in the following documents:

• Main text

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