Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: A76A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: Ala76Ala

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2022-01-15

Variant appearance in text: GC: A76A

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2021-11-22

Variant appearance in text: GC: A76A

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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Mkx mediates tenogenic differentiation but incompletely inhibits the proliferation of hypoxic MSCs.

Stem Cell Research & Therapy

Chen, Guanyin G; Fan, Dong D; Zhang, Wangqian W; Wang, Shuning S; Gu, Jintao J; Gao, Yuan Y; He, Lei L; Li, Weina W; Zhang, Cun C; Li, Meng M; Zhang, Yingqi Y; Liu, Zhaohui Z; Hao, Qiang Q

Publication Date: 2021-07-28

Variant appearance in text: GC: A76A

PubMed Link: 34321079

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity.

Plos Pathogens

Lood, Cédric C; Peeters, Charlotte C; Lamy-Besnier, Quentin Q; Wagemans, Jeroen J; De Vos, Daniel D; Proesmans, Marijke M; Pirnay, Jean-Paul JP; Echahidi, Fedoua F; Piérard, Denis D; Thimmesch, Matthieu M; Boeras, Anca A; Lagrou, Katrien K; De Canck, Evelien E; De Wachter, Elke E; van Noort, Vera V; Lavigne, Rob R; Vandamme, Peter P

Publication Date: 2021-03

Variant appearance in text: GC: Ala76Ala

PubMed Link: 33720991

Variant Present in the following documents:

• ppat.1009418.s005.xlsx, sheet 9

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Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.

Journal Of Translational Medicine

Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M

Publication Date: 2020-12-30

Variant appearance in text: GC: 228G>T

PubMed Link: 33380328

Variant Present in the following documents:

• 12967_2020_2675_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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An Autophagy-Related Long Noncoding RNA Signature Contributes to Poor Prognosis in Colorectal Cancer.

Journal Of Oncology

Wei, Jingsun J; Ge, Xiaoxu X; Tang, Yang Y; Qian, Yucheng Y; Lu, Wei W; Jiang, Kai K; Fang, Yimin Y; Hwang, Maxwell M; Fu, Dongliang D; Xiao, Qian Q; Ding, Kefeng K

Publication Date: 2020

Variant appearance in text: GC: A76A

PubMed Link: 33149738

Variant Present in the following documents:

• Main text

View BVdb publication page

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: GC: 228G>T

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

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Selection for Resistance to a Glyphosate-Containing Herbicide in Salmonella enterica Does Not Result in a Sustained Activation of the Tolerance Response or Increased Cross-Tolerance and Cross-Resistance to Clinically Important Antibiotics.

Applied And Environmental Microbiology

Pöppe, Judith J; Bote, Katrin K; Ramesh, Abhinaya A; Murugaiyan, Jayaseelan J; Kuropka, Benno B; Kühl, Michael M; Johnston, Paul P; Roesler, Uwe U; Makarova, Olga O

Publication Date: 2020-11-24

Variant appearance in text: GC: 228G>T

PubMed Link: 33008821

Variant Present in the following documents:

• AEM.01204-20-sd002.xlsx, sheet 1

View BVdb publication page

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Population sequencing enhances understanding of tea plant evolution.

Nature Communications

Wang, Xinchao X; Feng, Hu H; Chang, Yuxiao Y; Ma, Chunlei C; Wang, Liyuan L; Hao, Xinyuan X; Li, A'lun A; Cheng, Hao H; Wang, Lu L; Cui, Peng P; Jin, Jiqiang J; Wang, Xiaobo X; Wei, Kang K; Ai, Cheng C; Zhao, Sheng S; Wu, Zhichao Z; Li, Youyong Y; Liu, Benying B; Wang, Guo-Dong GD; Chen, Liang L; Ruan, Jue J; Yang, Yajun Y

Publication Date: 2020-09-07

Variant appearance in text: GC: A76A

PubMed Link: 32895382

Variant Present in the following documents:

• Main text

View BVdb publication page

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Low UV-C stress modulates Chlamydomonas reinhardtii biomass composition and oxidative stress response through proteomic and metabolomic changes involving novel signalers and effectors.

Biotechnology For Biofuels

Colina, Francisco F; Carbó, María M; Meijón, Mónica M; Cañal, María Jesús MJ; Valledor, Luis L

Publication Date: 2020

Variant appearance in text: GC: A76A

PubMed Link: 32577129

Variant Present in the following documents:

• Main text

View BVdb publication page

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An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.

Plos One

Morales, Karina Y KY; Singh, Namrata N; Perez, Francisco Agosto FA; Ignacio, John Carlos JC; Thapa, Ranjita R; Arbelaez, Juan D JD; Tabien, Rodante E RE; Famoso, Adam A; Wang, Diane R DR; Septiningsih, Endang M EM; Shi, Yuxin Y; Kretzschmar, Tobias T; McCouch, Susan R SR; Thomson, Michael J MJ

Publication Date: 2020

Variant appearance in text: GC: A76A

PubMed Link: 32407369

Variant Present in the following documents:

• Main text

View BVdb publication page

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LncRNA NR_003923 promotes cell proliferation, migration, fibrosis, and autophagy via the miR-760/miR-215-3p/IL22RA1 axis in human Tenon's capsule fibroblasts.

Cell Death & Disease

Zhao, Yang Y; Zhang, Feng F; Pan, Zheng Z; Luo, Haomin H; Liu, Ke K; Duan, Xuanchu X

Publication Date: 2019-08-07

Variant appearance in text: GC: A76A

PubMed Link: 31391457

Variant Present in the following documents:

• Main text

View BVdb publication page

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Integrative molecular profiling identifies a novel cluster of estrogen receptor-positive breast cancer in very young women.

Cancer Science

Park, Charny C; Yoon, Kyong-Ah KA; Kim, Jihyun J; Park, In Hae IH; Park, Soo Jin SJ; Kim, Min Kyeong MK; Jang, Wooyeong W; Cho, Soo Young SY; Park, Boyoung B; Kong, Sun-Young SY; Lee, Eun Sook ES

Publication Date: 2019-05

Variant appearance in text: GC: A76A

PubMed Link: 30811755

Variant Present in the following documents:

• CAS-110-1760-s002.xlsx, sheet 2

View BVdb publication page

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Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: GC: Ala76Ala

PubMed Link: 28231761

Variant Present in the following documents:

• 12864_2017_3524_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: GC: Ala76Ala

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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