Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 218C>G

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Whole-exome Sequencing of Nigerian Prostate Tumors from the Prostate Cancer Transatlantic Consortium (CaPTC) Reveals DNA Repair Genes Associated with African Ancestry.

Cancer Research Communications

White, Jason A JA; Kaninjing, Ernest T ET; Adeniji, Kayode A KA; Jibrin, Paul P; Obafunwa, John O JO; Ogo, Chidiebere N CN; Mohammed, Faruk F; Popoola, Ademola A; Fatiregun, Omolara A OA; Oluwole, Olabode P OP; Karanam, Balasubramanyam B; Elhussin, Isra I; Ambs, Stefan S; Tang, Wei W; Davis, Melissa M; Polak, Paz P; Campbell, Moray J MJ; Brignole, Kathryn R KR; Rotimi, Solomon O SO; Dean-Colomb, Windy W; Odedina, Folake T FT; Martin, Damali N DN; Yates, Clayton C

Publication Date: 2022-09

Variant appearance in text: GC: A73G

PubMed Link: 36922933

Variant Present in the following documents:

• crc-22-0136-s01.xlsx, sheet 1

View BVdb publication page

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: Ala73Gly

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10

View BVdb publication page

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Structural basis for shape-selective recognition and aminoacylation of a D-armless human mitochondrial tRNA.

Nature Communications

Kuhle, Bernhard B; Hirschi, Marscha M; Doerfel, Lili K LK; Lander, Gabriel C GC; Schimmel, Paul P

Publication Date: 2022-08-30

Variant appearance in text: GC: A73G

PubMed Link: 36042193

Variant Present in the following documents:

• 41467_2022_Article_32544.pdf

View BVdb publication page

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Papuan mitochondrial genomes and the settlement of Sahul.

Journal Of Human Genetics

Pedro, Nicole N; Brucato, Nicolas N; Fernandes, Veronica V; André, Mathilde M; Saag, Lauri L; Pomat, William W; Besse, Céline C; Boland, Anne A; Deleuze, Jean-François JF; Clarkson, Chris C; Sudoyo, Herawati H; Metspalu, Mait M; Stoneking, Mark M; Cox, Murray P MP; Leavesley, Matthew M; Pereira, Luisa L; Ricaut, François-Xavier FX

Publication Date: 2020-10

Variant appearance in text: GC: A73G

PubMed Link: 32483274

Variant Present in the following documents:

• 10038_2020_781_MOESM11_ESM.xlsx, sheet 1

View BVdb publication page

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Whole mitochondrial genome sequencing highlights mitochondrial impact in gastric cancer.

Scientific Reports

Cavalcante, Giovanna Chaves GC; Marinho, Anderson N R ANR; Anaissi, Ana Karyssa AK; Vinasco-Sandoval, Tatiana T; Ribeiro-Dos-Santos, André A; Vidal, Amanda Ferreira AF; de Araújo, Gilderlanio S GS; Demachki, Samia S; Ribeiro-Dos-Santos, Ândrea Â

Publication Date: 2019-10-31

Variant appearance in text: GC: A73G

PubMed Link: 31673122

Variant Present in the following documents:

• Main text
• 41598_2019_Article_51951.pdf

View BVdb publication page

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Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: GC: 218C>G; Ala73Gly

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum.

Oncotarget

Greenawalt, Danielle M DM; Liang, Winnie S WS; Saif, Sakina S; Johnson, Justin J; Todorov, Petar P; Dulak, Austin A; Enriquez, Daniel D; Halperin, Rebecca R; Ahmed, Ambar A; Saveliev, Vladislav V; Carpten, John J; Craig, David D; Barrett, J Carl JC; Dougherty, Brian B; Zinda, Michael M; Fawell, Stephen S; Dry, Jonathan R JR; Byth, Kate K

Publication Date: 2017-11-21

Variant appearance in text: GC: 218C>G; A73G

PubMed Link: 29245897

Variant Present in the following documents:

• oncotarget-08-99237-s002.xlsx, sheet 1

View BVdb publication page

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Contributions of Individual Domains to Function of the HIV-1 Rev Response Element.

Journal Of Virology

O'Carroll, Ina P IP; Thappeta, Yashna Y; Fan, Lixin L; Ramirez-Valdez, Edric A EA; Smith, Sean S; Wang, Yun-Xing YX; Rein, Alan A

Publication Date: 2017-11-01

Variant appearance in text: GC: A73G

PubMed Link: 28814520

Variant Present in the following documents:

• Main text

View BVdb publication page

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Alternative splicing of TAF6: downstream transcriptome impacts and upstream RNA splice control elements.

Plos One

Kamtchueng, Catherine C; Stébenne, Marie-Éve MÉ; Delannoy, Aurélie A; Wilhelm, Emmanuelle E; Léger, Hélène H; Benecke, Arndt G AG; Bell, Brendan B

Publication Date: 2014

Variant appearance in text: GC: A73G

PubMed Link: 25025302

Variant Present in the following documents:

• Main text
• pone.0102399.pdf
• pone.0102399.s007.xlsx, sheet 1

View BVdb publication page

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A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: GC: A73G

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

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Mitochondrial DNA heteroplasmy in diabetes and normal adults: role of acquired and inherited mutational patterns in twins.

Human Molecular Genetics

Avital, Gal G; Buchshtav, Mor M; Zhidkov, Ilia I; Tuval Feder, Jeanette J; Dadon, Sarah S; Rubin, Eitan E; Glass, Dan D; Spector, Timothy D TD; Mishmar, Dan D

Publication Date: 2012-10-01

Variant appearance in text: GC: A73G

PubMed Link: 22736028

Variant Present in the following documents:

• Main text

View BVdb publication page

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Timing and deciphering mitochondrial DNA macro-haplogroup R0 variability in Central Europe and Middle East.

Bmc Evolutionary Biology

Brandstätter, Anita A; Zimmermann, Bettina B; Wagner, Janine J; Göbel, Tanja T; Röck, Alexander W AW; Salas, Antonio A; Carracedo, Angel A; Parson, Walther W

Publication Date: 2008-07-04

Variant appearance in text: GC: A73G

PubMed Link: 18601722

Variant Present in the following documents:

• 1471-2148-8-191.pdf

View BVdb publication page

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