Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 215A>C

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: 215A>C

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8

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Structure-guided inhibition of the cancer DNA-mutating enzyme APOBEC3A.

Biorxiv : The Preprint Server For Biology

Harjes, Stefan S; Kurup, Harikrishnan M HM; Rieffer, Amanda E AE; Bayarjargal, Maitsetseg M; Filitcheva, Jana J; Su, Yongdong Y; Hale, Tracy K TK; Filichev, Vyacheslav V VV; Harjes, Elena E; Harris, Reuben S RS; Jameson, Geoffrey B GB

Publication Date: 2023-02-17

Variant appearance in text: GC: E72A

PubMed Link: 36824964

Variant Present in the following documents:

• Main text
• nihpp-2023.02.17.528918v1.pdf

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Design, Synthesis, and Evaluation of a Cross-Linked Oligonucleotide as the First Nanomolar Inhibitor of APOBEC3A.

Biochemistry

Kurup, Harikrishnan M HM; Kvach, Maksim V MV; Harjes, Stefan S; Barzak, Fareeda M FM; Jameson, Geoffrey B GB; Harjes, Elena E; Filichev, Vyacheslav V VV

Publication Date: 2022-11-15

Variant appearance in text: GC: E72A

PubMed Link: 36302365

Variant Present in the following documents:

• Main text

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Spontaneously Fermented Fruiting Bodies of Agaricus bisporus as a Valuable Source of New Isolates of Lactic Acid Bacteria with Functional Potential.

Foods (Basel, Switzerland)

Skrzypczak, Katarzyna K; Gustaw, Klaudia K; Jabłońska-Ryś, Ewa E; Sławińska, Aneta A; Gustaw, Waldemar W; Winiarczyk, Stanisław S

Publication Date: 2020-11-08

Variant appearance in text: GC: E72A

PubMed Link: 33171613

Variant Present in the following documents:

• foods-09-01631.pdf

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Nuclear and mitochondrial genome sequencing of North-African Leishmania infantum isolates from cured and relapsed visceral leishmaniasis patients reveals variations correlating with geography and phenotype.

Microbial Genomics

Bussotti, Giovanni G; Benkahla, Alia A; Jeddi, Fakhri F; Souiaï, Oussama O; Aoun, Karim K; Späth, Gerald F GF; Bouratbine, Aïda A

Publication Date: 2020-10

Variant appearance in text: GC: E72A

PubMed Link: 32975503

Variant Present in the following documents:

• Main text

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Combining genetic crosses and pool targeted DNA-seq for untangling genomic variations associated with resistance to multiple insecticides in the mosquito Aedes aegypti.

Evolutionary Applications

Cattel, Julien J; Faucon, Frédéric F; Le Péron, Bastien B; Sherpa, Stéphanie S; Monchal, Marie M; Grillet, Lucie L; Gaude, Thierry T; Laporte, Frederic F; Dusfour, Isabelle I; Reynaud, Stéphane S; David, Jean-Philippe JP

Publication Date: 2020-02

Variant appearance in text: GC: 215A>C; Glu72Ala

PubMed Link: 31993078

Variant Present in the following documents:

• EVA-13-303-s006.xlsx, sheet 1

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Environmental and Genetic Determinants of Serum 25(OH)-Vitamin D Levels during Pregnancy and Early Childhood.

Children (Basel, Switzerland)

Schoos, Ann-Marie Malby AM; Vinther, Cecilie C; Nørgaard, Sarah S; Brustad, Nicklas N; Stokholm, Jakob J; Bønnelykke, Klaus K; Bisgaard, Hans H; Chawes, Bo Lund BL

Publication Date: 2019-10-21

Variant appearance in text: GC: E72A

PubMed Link: 31640192

Variant Present in the following documents:

• Main text

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Transcriptome-derived investigation of biosynthesis of quinolizidine alkaloids in narrow-leafed lupin (Lupinus angustifolius L.) highlights candidate genes linked to iucundus locus.

Scientific Reports

Kroc, Magdalena M; Koczyk, Grzegorz G; Kamel, Katarzyna A KA; Czepiel, Katarzyna K; Fedorowicz-Strońska, Olga O; Krajewski, Paweł P; Kosińska, Joanna J; Podkowiński, Jan J; Wilczura, Paulina P; Święcicki, Wojciech W

Publication Date: 2019-02-19

Variant appearance in text: GC: E72A

PubMed Link: 30783128

Variant Present in the following documents:

• Main text

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Exploring the Catalytic Promiscuity of Phenolic Acid Decarboxylases: Asymmetric, 1,6-Conjugate Addition of Nucleophiles Across 4-Hydroxystyrene.

Advanced Synthesis & Catalysis

Payer, Stefan E SE; Sheng, Xiang X; Pollak, Hannah H; Wuensch, Christiane C; Steinkellner, Georg G; Himo, Fahmi F; Glueck, Silvia M SM; Faber, Kurt K

Publication Date: 2017-06-19

Variant appearance in text: GC: E72A

PubMed Link: 28713228

Variant Present in the following documents:

• ADSC-359-2066-s001.pdf

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Regioselective Enzymatic β-Carboxylation of para-Hydroxy- styrene Derivatives Catalyzed by Phenolic Acid Decarboxylases.

Advanced Synthesis & Catalysis

Wuensch, Christiane C; Pavkov-Keller, Tea T; Steinkellner, Georg G; Gross, Johannes J; Fuchs, Michael M; Hromic, Altijana A; Lyskowski, Andrzej A; Fauland, Kerstin K; Gruber, Karl K; Glueck, Silvia M SM; Faber, Kurt K

Publication Date: 2015-05-26

Variant appearance in text: GC: E72A

PubMed Link: 26190963

Variant Present in the following documents:

• Main text

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How long does biomedical research take? Studying the time taken between biomedical and health research and its translation into products, policy, and practice.

Health Research Policy And Systems

Hanney, Stephen R SR; Castle-Clarke, Sophie S; Grant, Jonathan J; Guthrie, Susan S; Henshall, Chris C; Mestre-Ferrandiz, Jorge J; Pistollato, Michele M; Pollitt, Alexandra A; Sussex, Jon J; Wooding, Steven S

Publication Date: 2015-01-01

Variant appearance in text: GC: e72a

PubMed Link: 25552353

Variant Present in the following documents:

• 12961_2014_368_MOESM3_ESM.pdf

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A DNA sequence recognition loop on APOBEC3A controls substrate specificity.

Plos One

Logue, Eric C EC; Bloch, Nicolin N; Dhuey, Erica E; Zhang, Ruonan R; Cao, Ping P; Herate, Cecile C; Chauveau, Lise L; Hubbard, Stevan R SR; Landau, Nathaniel R NR

Publication Date: 2014

Variant appearance in text: GC: E72A

PubMed Link: 24827831

Variant Present in the following documents:

• pone.0097062.pdf

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Structure-function relationships in yeast tubulins.

Molecular Biology Of The Cell

Richards, K L KL; Anders, K R KR; Nogales, E E; Schwartz, K K; Downing, K H KH; Botstein, D D

Publication Date: 2000-05

Variant appearance in text: GC: E72A

PubMed Link: 10793159

Variant Present in the following documents:

• Main text

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