Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 164G>C

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression.

Research Square

Yan, Shuting S; Zhu, Qiyao Q; Jain, Swati S; Schlick, Tamar T

Publication Date: 2022-01-04

Variant appearance in text: GC: G55A

PubMed Link: 35018371

Variant Present in the following documents:

• nihpp-rs1160075v1.pdf

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Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression.

Research Square

Yan, Shuting S; Zhu, Qiyao Q; Jain, Swati S; Schlick, Tamar T

Publication Date: 2022-01-04

Variant appearance in text: GC: G55A

PubMed Link: 35018371

Variant Present in the following documents:

• nihpp-rs1160075v1.pdf

View BVdb publication page

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Identification of Immune-Related Gene Signatures in Lung Adenocarcinoma and Lung Squamous Cell Carcinoma.

Frontiers In Immunology

Li, Na N; Wang, Jiahong J; Zhan, Xianquan X

Publication Date: 2021

Variant appearance in text: GC: 164G>C

PubMed Link: 34887858

Variant Present in the following documents:

• Table_4.xlsx, sheet 1

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To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element.

Journal Of The American Chemical Society

Schlick, Tamar T; Zhu, Qiyao Q; Dey, Abhishek A; Jain, Swati S; Yan, Shuting S; Laederach, Alain A

Publication Date: 2021-08-04

Variant appearance in text: GC: G55A

PubMed Link: 34283611

Variant Present in the following documents:

• Main text
• ja1c03003_si_002.xlsx, sheet 1
• ja1c03003.pdf

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To knot or not to knot: Multiple conformations of the SARS-CoV-2 frameshifting RNA element.

Biorxiv : The Preprint Server For Biology

Schlick, Tamar T; Zhu, Qiyao Q; Dey, Abhishek A; Jain, Swati S; Yan, Shuting S; Laederach, Alain A

Publication Date: 2021-07-05

Variant appearance in text: GC: G55A

PubMed Link: 33821274

Variant Present in the following documents:

• Main text
• media-2.xlsx, sheet 1
• nihpp-2021.03.31.437955v2.pdf

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Nicotinamide N-Methyltransferase: Genomic Connection to Disease.

International Journal Of Tryptophan Research : Ijtr

Ramsden, David B DB; Waring, Rosemary H RH; Parsons, Richard B RB; Barlow, David J DJ; Williams, Adrian C AC

Publication Date: 2020

Variant appearance in text: GC: G55A

PubMed Link: 32547055

Variant Present in the following documents:

• Main text
• 10.1177_1178646920919770.pdf

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Human gastric cancer modelling using organoids.

Gut

Seidlitz, Therese T; Merker, Sebastian R SR; Rothe, Alexander A; Zakrzewski, Falk F; von Neubeck, Cläre C; Grützmann, Konrad K; Sommer, Ulrich U; Schweitzer, Christine C; Schölch, Sebastian S; Uhlemann, Heike H; Gaebler, Anne-Marlene AM; Werner, Kristin K; Krause, Mechthild M; Baretton, Gustavo B GB; Welsch, Thilo T; Koo, Bon-Kyoung BK; Aust, Daniela E DE; Klink, Barbara B; Weitz, Jürgen J; Stange, Daniel E DE

Publication Date: 2019-02

Variant appearance in text: GC: Gly55Ala

PubMed Link: 29703791

Variant Present in the following documents:

• gutjnl-2017-314549supp010.xlsx, sheet 3

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Molecular epidemiology and dynamics of Pseudomonas aeruginosa populations in lungs of cystic fibrosis patients.

Infection And Immunity

Jelsbak, Lars L; Johansen, Helle Krogh HK; Frost, Anne-Louise AL; Thøgersen, Regitze R; Thomsen, Line E LE; Ciofu, Oana O; Yang, Lei L; Haagensen, Janus A J JA; Høiby, Niels N; Molin, Søren S

Publication Date: 2007-05

Variant appearance in text: GC: G55A

PubMed Link: 17261614

Variant Present in the following documents:

• Main text

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