Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 36A>G; A12A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: 36A>G

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9

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Cre recombinase expression cooperates with homozygous FLT3 internal tandem duplication knockin mouse model to induce acute myeloid leukemia.

Leukemia

Straube, Jasmin J; Eifert, Theresa T; Vu, Therese T; Janardhanan, Yashaswini Y; Haldar, Rohit R; von Eyss, Björn B; Cooper, Leanne L; Bruedigam, Claudia C; Ling, Victoria Y VY; Cooper, Emily E; Patch, Ann-Marie AM; Bullinger, Lars L; Schnoeder, Tina M TM; Bywater, Megan M; Heidel, Florian H FH; Lane, Steven W SW

Publication Date: 2023-02-04

Variant appearance in text: GC: a12a

PubMed Link: 36739348

Variant Present in the following documents:

• 41375_2023_1832_MOESM6_ESM.xlsx, sheet 1

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Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma.

The Journal Of Clinical Investigation

Lee, Patrick C PC; Klaeger, Susan S; Le, Phuong M PM; Korthauer, Keegan K; Cheng, Jingwei J; Ananthapadmanabhan, Varsha V; Frost, Thomas C TC; Stevens, Jonathan D JD; Wong, Alan Yl AY; Iorgulescu, J Bryan JB; Tarren, Anna Y AY; Chea, Vipheaviny A VA; Carulli, Isabel P IP; Lemvigh, Camilla K CK; Pedersen, Christina B CB; Gartin, Ashley K AK; Sarkizova, Siranush S; Wright, Kyle T KT; Li, Letitia W LW; Nomburg, Jason J; Li, Shuqiang S; Huang, Teddy T; Liu, Xiaoxi X; Pomerance, Lucas L; Doherty, Laura M LM; Apffel, Annie M AM; Wallace, Luke J LJ; Rachimi, Suzanna S; Felt, Kristen D KD; Wolff, Jacquelyn O JO; Witten, Elizabeth E; Zhang, Wandi W; Neuberg, Donna D; Lane, William J WJ; Zhang, Guanglan G; Olsen, Lars R LR; Thakuria, Manisha M; Rodig, Scott J SJ; Clauser, Karl R KR; Starrett, Gabriel J GJ; Doench, John G JG; Buhrlage, Sara J SJ; Carr, Steven A SA; DeCaprio, James A JA; Wu, Catherine J CJ; Keskin, Derin B DB

Publication Date: 2022-07-01

Variant appearance in text: GC: Ala12=

PubMed Link: 35775490

Variant Present in the following documents:

• jci-132-151666-s195.xlsx, sheet 2

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Characterization and Biological Activity of Fiber-Type Cannabis sativa L. Aerial Parts at Different Growth Stages.

Plants (Basel, Switzerland)

Mastellone, Giulia G; Marengo, Arianna A; Sgorbini, Barbara B; Scaglia, Federica F; Capetti, Francesca F; Gai, Francesco F; Peiretti, Pier Giorgio PG; Rubiolo, Patrizia P; Cagliero, Cecilia C

Publication Date: 2022-02-03

Variant appearance in text: GC: A12A

PubMed Link: 35161400

Variant Present in the following documents:

• Main text

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Identification of Immune-Related Gene Signatures in Lung Adenocarcinoma and Lung Squamous Cell Carcinoma.

Frontiers In Immunology

Li, Na N; Wang, Jiahong J; Zhan, Xianquan X

Publication Date: 2021

Variant appearance in text: GC: 36A>G

PubMed Link: 34887858

Variant Present in the following documents:

• Table_4.xlsx, sheet 1

View BVdb publication page

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: GC: 36A>G

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

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Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes.

Bmc Biology

Pfrengle, Saskia S; Neukamm, Judith J; Guellil, Meriam M; Keller, Marcel M; Molak, Martyna M; Avanzi, Charlotte C; Kushniarevich, Alena A; Montes, Núria N; Neumann, Gunnar U GU; Reiter, Ella E; Tukhbatova, Rezeda I RI; Berezina, Nataliya Y NY; Buzhilova, Alexandra P AP; Korobov, Dmitry S DS; Suppersberger Hamre, Stian S; Matos, Vitor M J VMJ; Ferreira, Maria T MT; González-Garrido, Laura L; Wasterlain, Sofia N SN; Lopes, Célia C; Santos, Ana Luisa AL; Antunes-Ferreira, Nathalie N; Duarte, Vitória V; Silva, Ana Maria AM; Melo, Linda L; Sarkic, Natasa N; Saag, Lehti L; Tambets, Kristiina K; Busso, Philippe P; Cole, Stewart T ST; Avlasovich, Alexei A; Roberts, Charlotte A CA; Sheridan, Alison A; Cessford, Craig C; Robb, John J; Krause, Johannes J; Scheib, Christiana L CL; Inskip, Sarah A SA; Schuenemann, Verena J VJ

Publication Date: 2021-10-05

Variant appearance in text: GC: A12a

PubMed Link: 34610848

Variant Present in the following documents:

• 12915_2021_1120_MOESM1_ESM.pdf

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The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization.

The Embo Journal

Doron-Mandel, Ella E; Koppel, Indrek I; Abraham, Ofri O; Rishal, Ida I; Smith, Terika P TP; Buchanan, Courtney N CN; Sahoo, Pabitra K PK; Kadlec, Jan J; Oses-Prieto, Juan A JA; Kawaguchi, Riki R; Alber, Stefanie S; Zahavi, Eitan Erez EE; Di Matteo, Pierluigi P; Di Pizio, Agostina A; Song, Didi-Andreas DA; Okladnikov, Nataliya N; Gordon, Dalia D; Ben-Dor, Shifra S; Haffner-Krausz, Rebecca R; Coppola, Giovanni G; Burlingame, Alma L AL; Jungwirth, Pavel P; Twiss, Jeffery L JL; Fainzilber, Mike M

Publication Date: 2021-10-18

Variant appearance in text: GC: A12A

PubMed Link: 34515347

Variant Present in the following documents:

• Main text

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Characterization of the first Pseudomonas grimontii bacteriophage, PMBT3.

Archives Of Virology

Sprotte, Sabrina S; Brinks, Erik E; Wagner, Natalia N; Kropinski, Andrew M AM; Neve, Horst H; Franz, Charles M A P CMAP

Publication Date: 2021-10

Variant appearance in text: GC: A12A

PubMed Link: 34347170

Variant Present in the following documents:

• Main text

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Evaluation of prescription practices in rheumatoid arthritis at the rheumatology clinic in a tertiary care teaching hospital in Uttarakhand: A cross-sectional study.

Journal Of Family Medicine And Primary Care

Mittal, Gauri G; Bisht, Manisha M; Pai, Venkatesh S VS; Handu, Shailendra S SS

Publication Date: 2021-02

Variant appearance in text: GC: A12A

PubMed Link: 34041071

Variant Present in the following documents:

• Main text
• JFMPC-10-745.pdf

View BVdb publication page

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Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity.

Plos Pathogens

Lood, Cédric C; Peeters, Charlotte C; Lamy-Besnier, Quentin Q; Wagemans, Jeroen J; De Vos, Daniel D; Proesmans, Marijke M; Pirnay, Jean-Paul JP; Echahidi, Fedoua F; Piérard, Denis D; Thimmesch, Matthieu M; Boeras, Anca A; Lagrou, Katrien K; De Canck, Evelien E; De Wachter, Elke E; van Noort, Vera V; Lavigne, Rob R; Vandamme, Peter P

Publication Date: 2021-03

Variant appearance in text: GC: Ala12Ala

PubMed Link: 33720991

Variant Present in the following documents:

• ppat.1009418.s005.xlsx, sheet 9

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: GC: 36A>G

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

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Molecular & biochemical analysis of Pro12Ala variant of PPAR-γ2 gene in type 2 diabetes mellitus.

Saudi Journal Of Biological Sciences

Syed, Rabbani R; Jamil, Kaiser K; Asimuddin, M M; Alqahtani, Mohammed S MS; Alshehri, Meshal M; Mateen, Ayesha A; Wahab Ali Aduderman, Abdul A; Shamsul Ola, Mohammad M; Malik, Abdul A

Publication Date: 2020-09

Variant appearance in text: GC: Ala12Ala

PubMed Link: 32884427

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

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Identification and analysis of CYP450 and UGT supergene family members from the transcriptome of Aralia elata (Miq.) seem reveal candidate genes for triterpenoid saponin biosynthesis.

Bmc Plant Biology

Cheng, Yao Y; Liu, Hanbing H; Tong, Xuejiao X; Liu, Zaimin Z; Zhang, Xin X; Li, Dalong D; Jiang, Xinmei X; Yu, Xihong X

Publication Date: 2020-05-13

Variant appearance in text: GC: A12A

PubMed Link: 32404131

Variant Present in the following documents:

• Main text

View BVdb publication page

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UHMK1 promotes gastric cancer progression through reprogramming nucleotide metabolism.

The Embo Journal

Feng, Xing X; Ma, Dong D; Zhao, Jiabao J; Song, Yongxi Y; Zhu, Yuekun Y; Zhou, Qingxin Q; Ma, Fei F; Liu, Xing X; Zhong, Mengya M; Liu, Yu Y; Xiong, Yubo Y; Qiu, Xingfeng X; Zhang, Zhen Z; Zhang, Heng H; Zhao, Yongxiang Y; Zhang, Kaiguang K; Hong, Xuehui X; Zhang, Zhiyong Z

Publication Date: 2020-03-02

Variant appearance in text: GC: A12A

PubMed Link: 31975428

Variant Present in the following documents:

• Main text

View BVdb publication page

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AIDE: annotation-assisted isoform discovery with high precision.

Genome Research

Li, Wei Vivian WV; Li, Shan S; Tong, Xin X; Deng, Ling L; Shi, Hubing H; Li, Jingyi Jessica JJ

Publication Date: 2019-12

Variant appearance in text: GC: A12A

PubMed Link: 31694868

Variant Present in the following documents:

• Main text

View BVdb publication page

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Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.

Cell Death & Disease

Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D

Publication Date: 2019-02-27

Variant appearance in text: GC: 36A>G

PubMed Link: 30814510

Variant Present in the following documents:

• 41419_2019_1453_MOESM27_ESM.xlsx, sheet 1

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A likely pathogenic variant putatively affecting splicing of PIGA identified in a multiple congenital anomalies hypotonia-seizures syndrome 2 (MCAHS2) family pedigree via whole-exome sequencing.

Molecular Genetics & Genomic Medicine

Yang, Junli J; Wang, Qiong Q; Zhuo, Qingcui Q; Tian, Huiling H; Li, Wen W; Luo, Fang F; Zhang, Jinghui J; Bi, Dan D; Peng, Jing J; Zhou, Dong D; Xin, Huawei H

Publication Date: 2018-09

Variant appearance in text: GC: 36A>G

PubMed Link: 29974678

Variant Present in the following documents:

• MGG3-6-739-s002.xlsx, sheet 7

View BVdb publication page

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Adequate, questionable, and inadequate drug prescribing for older adults at the end of life: a European expert consensus.

European Journal Of Clinical Pharmacology

Morin, Lucas L; Laroche, Marie-Laure ML; Vetrano, Davide L DL; Fastbom, Johan J; Johnell, Kristina K

Publication Date: 2018-10

Variant appearance in text: GC: A12A

PubMed Link: 29934849

Variant Present in the following documents:

• 228_2018_Article_2507.pdf

View BVdb publication page

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Medication incidents in primary care medicine: a prospective study in the Swiss Sentinel Surveillance Network (Sentinella).

Bmj Open

Gnädinger, Markus M; Conen, Dieter D; Herzig, Lilli L; Puhan, Milo A MA; Staehelin, Alfred A; Zoller, Marco M; Ceschi, Alessandro A

Publication Date: 2017-07-26

Variant appearance in text: GC: A12A

PubMed Link: 28751484

Variant Present in the following documents:

• bmjopen-2016-013658.draft_revisions.pdf

View BVdb publication page

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Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.

G3 (Bethesda, Md.)

Vale-Silva, Luis L; Beaudoing, Emmanuel E; Tran, Van Du T VDT; Sanglard, Dominique D

Publication Date: 2017-08-07

Variant appearance in text: GC: 36A>G

PubMed Link: 28663342

Variant Present in the following documents:

• 2413FileS2.xlsx, sheet 1

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: GC: 36A>G

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Genotype Phenotype Correlation of Genetic Polymorphism of PPAR Gamma Gene and Therapeutic Response to Pioglitazone in Type 2 Diabetes Mellitus- A Pilot Study.

Journal Of Clinical And Diagnostic Research : Jcdr

Priya, S Shanmuga SS; Sankaran, Ramalingam R; Ramalingam, Sudha S; Sairam, Thiagarajan T; Somasundaram, L S LS

Publication Date: 2016-02

Variant appearance in text: GC: Ala12Ala

PubMed Link: 27042481

Variant Present in the following documents:

• Main text

View BVdb publication page

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Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: GC: A12A

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2

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Dietary polyunsaturated fatty acids and the Pro12Ala polymorphisms of PPARG regulate serum lipids through divergent pathways: a randomized crossover clinical trial.

Genes & Nutrition

Pihlajamäki, Jussi J; Schwab, Ursula U; Kaminska, Dorota D; Ågren, Jyrki J; Kuusisto, Johanna J; Kolehmainen, Marjukka M; Paananen, Jussi J; Laakso, Markku M; Uusitupa, Matti M

Publication Date: 2015-11

Variant appearance in text: GC: Ala12Ala

PubMed Link: 26446033

Variant Present in the following documents:

• Main text

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Splicing mutation analysis reveals previously unrecognized pathways in lymph node-invasive breast cancer.

Scientific Reports

Dorman, Stephanie N SN; Viner, Coby C; Rogan, Peter K PK

Publication Date: 2014-11-14

Variant appearance in text: GC: A12A

PubMed Link: 25394353

Variant Present in the following documents:

• srep07063-s2.xls, sheet 3

View BVdb publication page

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Pro12Ala polymorphism in PPAR-gamma2 and dementia in Chinese nonagenarians/centenarians.

Age (Dordrecht, Netherlands)

Yue, Ji-Rong JR; Dong, Bi-Rong BR; Huang, Chang-Quan CQ; Lu, Zhen-Chan ZC; Wu, Hong-Mei HM; Zhang, Yan-Ling YL

Publication Date: 2010-09

Variant appearance in text: GC: Ala12Ala

PubMed Link: 20640553

Variant Present in the following documents:

• Main text

View BVdb publication page

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Epigenetic regulation of transcription: a mechanism for inducing variations in phenotype (fetal programming) by differences in nutrition during early life?

The British Journal Of Nutrition

Burdge, Graham C GC; Hanson, Mark A MA; Slater-Jefferies, Jo L JL; Lillycrop, Karen A KA

Publication Date: 2007-06

Variant appearance in text: GC: Ala12Ala

PubMed Link: 17381976

Variant Present in the following documents:

• Main text

View BVdb publication page

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