A large peptidome dataset improves HLA class I epitope prediction across most of the human population.
Nature Biotechnology
Sarkizova, Siranush S; Klaeger, Susan S; Le, Phuong M PM; Li, Letitia W LW; Oliveira, Giacomo G; Keshishian, Hasmik H; Hartigan, Christina R CR; Zhang, Wandi W; Braun, David A DA; Ligon, Keith L KL; Bachireddy, Pavan P; Zervantonakis, Ioannis K IK; Rosenbluth, Jennifer M JM; Ouspenskaia, Tamara T; Law, Travis T; Justesen, Sune S; Stevens, Jonathan J; Lane, William J WJ; Eisenhaure, Thomas T; Lan Zhang, Guang G; Clauser, Karl R KR; Hacohen, Nir N; Carr, Steven A SA; Wu, Catherine J CJ; Keskin, Derin B DB
Pan-cancer whole-genome analyses of metastatic solid tumours.
Nature
Priestley, Peter P; Baber, Jonathan J; Lolkema, Martijn P MP; Steeghs, Neeltje N; de Bruijn, Ewart E; Shale, Charles C; Duyvesteyn, Korneel K; Haidari, Susan S; van Hoeck, Arne A; Onstenk, Wendy W; Roepman, Paul P; Voda, Mircea M; Bloemendal, Haiko J HJ; Tjan-Heijnen, Vivianne C G VCG; van Herpen, Carla M L CML; Labots, Mariette M; Witteveen, Petronella O PO; Smit, Egbert F EF; Sleijfer, Stefan S; Voest, Emile E EE; Cuppen, Edwin E
Targeted next-generation sequencing of dedifferentiated chondrosarcoma in the skull base reveals combined TP53 and PTEN mutations with increased proliferation index, an implication for pathogenesis.
Oncotarget
Gao, Lu L; Hong, Xiafei X; Guo, Xiaopeng X; Cao, Dengfeng D; Gao, Xiaohuan X; DeLaney, Thomas F TF; Gong, Xinqi X; Chen, Rongrong R; Ni, Jianjiao J; Yao, Yong Y; Wang, Renzhi R; Chen, Xi X; Tian, Pangzehuan P; Xing, Bing B
Publication Date: 2016-07-12
Variant appearance in text: TERT: 901C>T; Arg301Cys
Whole exome sequencing identifies a recurrent RQCD1 P131L mutation in cutaneous melanoma.
Oncotarget
Wong, Stephen Q SQ; Behren, Andreas A; Mar, Victoria J VJ; Woods, Katherine K; Li, Jason J; Martin, Claire C; Sheppard, Karen E KE; Wolfe, Rory R; Kelly, John J; Cebon, Jonathan J; Dobrovic, Alexander A; McArthur, Grant A GA