Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.
Nature Communications
Khatri, Bhuwan B; Tessneer, Kandice L KL; Rasmussen, Astrid A; Aghakhanian, Farhang F; Reksten, Tove Ragna TR; Adler, Adam A; Alevizos, Ilias I; Anaya, Juan-Manuel JM; Aqrawi, Lara A LA; Baecklund, Eva E; Brun, Johan G JG; Bucher, Sara Magnusson SM; Eloranta, Maija-Leena ML; Engelke, Fiona F; Forsblad-d'Elia, Helena H; Glenn, Stuart B SB; Hammenfors, Daniel D; Imgenberg-Kreuz, Juliana J; Jensen, Janicke Liaaen JL; Johnsen, Svein Joar Auglænd SJA; Jonsson, Malin V MV; Kvarnström, Marika M; Kelly, Jennifer A JA; Li, He H; Mandl, Thomas T; Martín, Javier J; Nocturne, Gaétane G; Norheim, Katrine Brække KB; Palm, Øyvind Ø; Skarstein, Kathrine K; Stolarczyk, Anna M AM; Taylor, Kimberly E KE; Teruel, Maria M; Theander, Elke E; Venuturupalli, Swamy S; Wallace, Daniel J DJ; Grundahl, Kiely M KM; Hefner, Kimberly S KS; Radfar, Lida L; Lewis, David M DM; Stone, Donald U DU; Kaufman, C Erick CE; Brennan, Michael T MT; Guthridge, Joel M JM; James, Judith A JA; Scofield, R Hal RH; Gaffney, Patrick M PM; Criswell, Lindsey A LA; Jonsson, Roland R; Eriksson, Per P; Bowman, Simon J SJ; Omdal, Roald R; Rönnblom, Lars L; Warner, Blake B; Rischmueller, Maureen M; Witte, Torsten T; Farris, A Darise AD; Mariette, Xavier X; Alarcon-Riquelme, Marta E ME; , ; Shiboski, Caroline H CH; , ; Wahren-Herlenius, Marie M; Ng, Wan-Fai WF; , ; Sivils, Kathy L KL; Adrianto, Indra I; Nordmark, Gunnel G; Lessard, Christopher J CJ
Construction and validation of an immunoediting-based optimized neoantigen load (ioTNL) model to predict the response and prognosis of immune checkpoint therapy in various cancers.
TNFAIP3 Reduction-of-Function Drives Female Infertility and CNS Inflammation.
Frontiers In Immunology
Zammit, Nathan W NW; McDowell, Joseph J; Warren, Joanna J; Muskovic, Walter W; Gamble, Joanne J; Shi, Yan-Chuan YC; Kaczorowski, Dominik D; Chan, Chia-Ling CL; Powell, Joseph J; Ormandy, Chris C; Brown, David D; Oakes, Samantha R SR; Grey, Shane T ST
Predicting Lymphoma Development by Exploiting Genetic Variants and Clinical Findings in a Machine Learning-Based Methodology With Ensemble Classifiers in a Cohort of Sjögren's Syndrome Patients.
Ieee Open Journal Of Engineering In Medicine And Biology
Kourou, Konstantina D KD; Pezoulas, Vasileios C VC; Georga, Eleni I EI; Exarchos, Themis T; Papaloukas, Costas C; Voulgarelis, Michalis M; Goules, Andreas A; Nezos, Andrianos A; Tzioufas, Athanasios G AG; Moutsopoulos, Earalampos M EM; Mavragani, Clio C; Fotiadis, Dimitrios I DI
Genome Editing Using CRISPR-Cas9 and Autoimmune Diseases: A Comprehensive Review.
International Journal Of Molecular Sciences
Lee, Min Ho MH; Shin, Jae Il JI; Yang, Jae Won JW; Lee, Keum Hwa KH; Cha, Do Hyeon DH; Hong, Jun Beom JB; Park, Yeoeun Y; Choi, Eugene E; Tizaoui, Kalthoum K; Koyanagi, Ai A; Jacob, Louis L; Park, Seoyeon S; Kim, Ji Hong JH; Smith, Lee L
Genome Editing Using CRISPR-Cas9 and Autoimmune Diseases: A Comprehensive Review.
International Journal Of Molecular Sciences
Lee, Min Ho MH; Shin, Jae Il JI; Yang, Jae Won JW; Lee, Keum Hwa KH; Cha, Do Hyeon DH; Hong, Jun Beom JB; Park, Yeoeun Y; Choi, Eugene E; Tizaoui, Kalthoum K; Koyanagi, Ai A; Jacob, Louis L; Park, Seoyeon S; Kim, Ji Hong JH; Smith, Lee L
Single-cell expression quantitative trait loci (eQTL) analysis of SLE-risk loci in lupus patient monocytes.
Arthritis Research & Therapy
Ghodke-Puranik, Yogita Y; Jin, Zhongbo Z; Zimmerman, Kip D KD; Ainsworth, Hannah C HC; Fan, Wei W; Jensen, Mark A MA; Dorschner, Jessica M JM; Vsetecka, Danielle M DM; Amin, Shreyasee S; Makol, Ashima A; Ernste, Floranne F; Osborn, Thomas T; Moder, Kevin K; Chowdhary, Vaidehi V; Langefeld, Carl D CD; Niewold, Timothy B TB
Genetics, Epigenetics, and Gender Impact in Axial-Spondyloarthritis Susceptibility: An Update on Genetic Polymorphisms and Their Sex Related Associations.
Frontiers In Genetics
Chimenti, Maria Sole MS; Perricone, Carlo C; D'Antonio, Arianna A; Ferraioli, Mario M; Conigliaro, Paola P; Triggianese, Paola P; Ciccacci, Cinzia C; Borgiani, Paola P; Perricone, Roberto R
Characterization of Rheumatoid Arthritis Risk-Associated SNPs and Identification of Novel Therapeutic Sites Using an In-Silico Approach.
Biology
Akhtar, Mehran M; Ali, Yasir Y; Islam, Zia-Ul ZU; Arshad, Maria M; Rauf, Mamoona M; Ali, Muhammad M; Maodaa, Saleh N SN; Al-Farraj, Saleh A SA; El-Serehy, Hamed A HA; Jalil, Fazal F
Identification of a Novel Serum Proteomic Signature for Primary Sjögren's Syndrome.
Frontiers In Immunology
Padern, Guillaume G; Duflos, Claire C; Ferreira, Rosanna R; Assou, Said S; Guilpain, Philippe P; Maria, Alexandre Thibault Jacques ATJ; Goulabchand, Radjiv R; Galea, Pascale P; Jurtela, Maja M; Jorgensen, Christian C; Pers, Yves-Marie YM
Molecular genomic features associated with in vitro response of the NCI-60 cancer cell line panel to natural products.
Molecular Oncology
Krushkal, Julia J; Negi, Simarjeet S; Yee, Laura M LM; Evans, Jason R JR; Grkovic, Tanja T; Palmisano, Alida A; Fang, Jianwen J; Sankaran, Hari H; McShane, Lisa M LM; Zhao, Yingdong Y; O'Keefe, Barry R BR
Genetic Polymorphisms Associated with Rheumatoid Arthritis Development and Antirheumatic Therapy Response.
International Journal Of Molecular Sciences
Mikhaylenko, Dmitry S DS; Nemtsova, Marina V MV; Bure, Irina V IV; Kuznetsova, Ekaterina B EB; Alekseeva, Ekaterina A EA; Tarasov, Vadim V VV; Lukashev, Alexander N AN; Beloukhova, Marina I MI; Deviatkin, Andrei A AA; Zamyatnin, Andrey A AA
A phase I dose-escalation study of enzalutamide in combination with the AKT inhibitor AZD5363 (capivasertib) in patients with metastatic castration-resistant prostate cancer.
Annals Of Oncology : Official Journal Of The European Society For Medical Oncology
Kolinsky, M P MP; Rescigno, P P; Bianchini, D D; Zafeiriou, Z Z; Mehra, N N; Mateo, J J; Michalarea, V V; Riisnaes, R R; Crespo, M M; Figueiredo, I I; Miranda, S S; Nava Rodrigues, D D; Flohr, P P; Tunariu, N N; Banerji, U U; Ruddle, R R; Sharp, A A; Welti, J J; Lambros, M M; Carreira, S S; Raynaud, F I FI; Swales, K E KE; Plymate, S S; Luo, J J; Tovey, H H; Porta, N N; Slade, R R; Leonard, L L; Hall, E E; de Bono, J S JS
Gene expression profiling of epithelium-associated FcRL4+ B cells in primary Sjögren's syndrome reveals a pathogenic signature.
Journal Of Autoimmunity
Verstappen, Gwenny M GM; Ice, John A JA; Bootsma, Hendrika H; Pringle, Sarah S; Haacke, Erlin A EA; de Lange, Kim K; van der Vries, Gerben B GB; Hickey, Peter P; Vissink, Arjan A; Spijkervet, Frederik K L FKL; Lessard, Christopher J CJ; Kroese, Frans G M FGM
Genomics of lethal prostate cancer at diagnosis and castration resistance.
The Journal Of Clinical Investigation
Mateo, Joaquin J; Seed, George G; Bertan, Claudia C; Rescigno, Pasquale P; Dolling, David D; Figueiredo, Ines I; Miranda, Susana S; Nava Rodrigues, Daniel D; Gurel, Bora B; Clarke, Matthew M; Atkin, Mark M; Chandler, Rob R; Messina, Carlo C; Sumanasuriya, Semini S; Bianchini, Diletta D; Barrero, Maialen M; Petermolo, Antonella A; Zafeiriou, Zafeiris Z; Fontes, Mariane M; Perez-Lopez, Raquel R; Tunariu, Nina N; Fulton, Ben B; Jones, Robert R; McGovern, Ursula U; Ralph, Christy C; Varughese, Mohini M; Parikh, Omi O; Jain, Suneil S; Elliott, Tony T; Sandhu, Shahneen S; Porta, Nuria N; Hall, Emma E; Yuan, Wei W; Carreira, Suzanne S; de Bono, Johann S JS
Publication Date: 2020-04-01
Variant appearance in text: TNFAIP3: 380T>G; F127C; rs2230926
TNFAIP3 Gene Polymorphisms in Three Common Autoimmune Diseases: Systemic Lupus Erythematosus, Rheumatoid Arthritis, and Primary Sjogren Syndrome-Association with Disease Susceptibility and Clinical Phenotypes in Italian Patients.
Journal Of Immunology Research
Ciccacci, C C; Latini, A A; Perricone, C C; Conigliaro, P P; Colafrancesco, S S; Ceccarelli, F F; Priori, R R; Conti, F F; Perricone, R R; Novelli, G G; Borgiani, P P