Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Rare Variants in Genes of the Cholesterol Pathway Are Present in 60% of Patients with Acute Myocardial Infarction.
International Journal Of Molecular Sciences
Pan-Lizcano, Ricardo R; Mariñas-Pardo, Luis L; Núñez, Lucía L; Rebollal-Leal, Fernando F; López-Vázquez, Domingo D; Pereira, Ana A; Molina-Nieto, Aranzazu A; Calviño, Ramón R; Vázquez-Rodríguez, Jose Manuel JM; Hermida-Prieto, Manuel M
Beneficial effects of mifepristone treatment in breast cancer patients selected by the progesterone receptor isoform ratio: Results from the MIPRA trial.
Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research
Elía, Andrés A; Saldain, Leo L; Vanzulli, Silvia I SI; Helguero, Luisa A LA; Lamb, Caroline A CA; Fabris, Victoria V; Pataccini, Gabriela G; Martínez-Vazquez, Paula P; Burruchaga, Javier J; Caillet-Bois, Ines I; Spengler, Eunice E; Acosta Haab, Gabriela G; Liguori, Marcos M; Castets, Alejandra A; Lovisi, Silvia S; Abascal, María F MF; Novaro, Virginia V; Sánchez, Jana J; Muñoz, Javier J; Belizán, Jose M JM; Abba, Martín C MC; Gass, Hugo H; Rojas, Paola P; Lanari, Claudia C
Publication Date: 2022-10-21
Variant appearance in text: MYLIP: 1025A>G; Asn342Ser; rs9370867
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Genomic, transcriptomic, and metabolomic profiles of hiPSC-derived dopamine neurons from clinically discordant brothers with identical PRKN deletions.
Npj Parkinson'S Disease
Cukier, Holly N HN; Kim, Hyunjin H; Griswold, Anthony J AJ; Codreanu, Simona G SG; Prince, Lisa M LM; Sherrod, Stacy D SD; McLean, John A JA; Dykxhoorn, Derek M DM; Ess, Kevin C KC; Hedera, Peter P; Bowman, Aaron B AB; Neely, M Diana MD
Publication Date: 2022-06-29
Variant appearance in text: MYLIP: N342S; rs9370867
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression.
Nature Genetics
Võsa, Urmo U; Claringbould, Annique A; Westra, Harm-Jan HJ; Bonder, Marc Jan MJ; Deelen, Patrick P; Zeng, Biao B; Kirsten, Holger H; Saha, Ashis A; Kreuzhuber, Roman R; Yazar, Seyhan S; Brugge, Harm H; Oelen, Roy R; de Vries, Dylan H DH; van der Wijst, Monique G P MGP; Kasela, Silva S; Pervjakova, Natalia N; Alves, Isabel I; Favé, Marie-Julie MJ; Agbessi, Mawussé M; Christiansen, Mark W MW; Jansen, Rick R; Seppälä, Ilkka I; Tong, Lin L; Teumer, Alexander A; Schramm, Katharina K; Hemani, Gibran G; Verlouw, Joost J; Yaghootkar, Hanieh H; Sönmez Flitman, Reyhan R; Brown, Andrew A; Kukushkina, Viktorija V; Kalnapenkis, Anette A; Rüeger, Sina S; Porcu, Eleonora E; Kronberg, Jaanika J; Kettunen, Johannes J; Lee, Bernett B; Zhang, Futao F; Qi, Ting T; Hernandez, Jose Alquicira JA; Arindrarto, Wibowo W; Beutner, Frank F; , ; , ; Dmitrieva, Julia J; Elansary, Mahmoud M; Fairfax, Benjamin P BP; Georges, Michel M; Heijmans, Bastiaan T BT; Hewitt, Alex W AW; Kähönen, Mika M; Kim, Yungil Y; Knight, Julian C JC; Kovacs, Peter P; Krohn, Knut K; Li, Shuang S; Loeffler, Markus M; Marigorta, Urko M UM; Mei, Hailang H; Momozawa, Yukihide Y; Müller-Nurasyid, Martina M; Nauck, Matthias M; Nivard, Michel G MG; Penninx, Brenda W J H BWJH; Pritchard, Jonathan K JK; Raitakari, Olli T OT; Rotzschke, Olaf O; Slagboom, Eline P EP; Stehouwer, Coen D A CDA; Stumvoll, Michael M; Sullivan, Patrick P; 't Hoen, Peter A C PAC; Thiery, Joachim J; Tönjes, Anke A; van Dongen, Jenny J; van Iterson, Maarten M; Veldink, Jan H JH; Völker, Uwe U; Warmerdam, Robert R; Wijmenga, Cisca C; Swertz, Morris M; Andiappan, Anand A; Montgomery, Grant W GW; Ripatti, Samuli S; Perola, Markus M; Kutalik, Zoltan Z; Dermitzakis, Emmanouil E; Bergmann, Sven S; Frayling, Timothy T; van Meurs, Joyce J; Prokisch, Holger H; Ahsan, Habibul H; Pierce, Brandon L BL; Lehtimäki, Terho T; Boomsma, Dorret I DI; Psaty, Bruce M BM; Gharib, Sina A SA; Awadalla, Philip P; Milani, Lili L; Ouwehand, Willem H WH; Downes, Kate K; Stegle, Oliver O; Battle, Alexis A; Visscher, Peter M PM; Yang, Jian J; Scholz, Markus M; Powell, Joseph J; Gibson, Greg G; Esko, Tõnu T; Franke, Lude L
Multi-level evidence of an allelic hierarchy of USH2A variants in hearing, auditory processing and speech/language outcomes.
Communications Biology
Perrino, Peter A PA; Talbot, Lidiya L; Kirkland, Rose R; Hill, Amanda A; Rendall, Amanda R AR; Mountford, Hayley S HS; Taylor, Jenny J; , ; Buscarello, Alexzandrea N AN; Lahiri, Nayana N; Saggar, Anand A; Fitch, R Holly RH; Newbury, Dianne F DF
Six years' experience with LipidSeq: clinical and research learnings from a hybrid, targeted sequencing panel for dyslipidemias.
Bmc Medical Genomics
Dron, Jacqueline S JS; Wang, Jian J; McIntyre, Adam D AD; Iacocca, Michael A MA; Robinson, John F JF; Ban, Matthew R MR; Cao, Henian H; Hegele, Robert A RA
Publication Date: 2020-02-10
Variant appearance in text: MYLIP: 1025A>G; Asn342Ser
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
Genomic Basis of Convergent Island Phenotypes in Boa Constrictors.
Genome Biology And Evolution
Card, Daren C DC; Adams, Richard H RH; Schield, Drew R DR; Perry, Blair W BW; Corbin, Andrew B AB; Pasquesi, Giulia I M GIM; Row, Kristopher K; Van Kleeck, Melissa J MJ; Daza, Juan M JM; Booth, Warren W; Montgomery, Chad E CE; Boback, Scott M SM; Castoe, Todd A TA
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
Publication Date: 2019-10-09
Variant appearance in text: MYLIP: N342S; rs9370867
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
Nature Communications
Fragoza, Robert R; Das, Jishnu J; Wierbowski, Shayne D SD; Liang, Jin J; Tran, Tina N TN; Liang, Siqi S; Beltran, Juan F JF; Rivera-Erick, Christen A CA; Ye, Kaixiong K; Wang, Ting-Yi TY; Yao, Li L; Mort, Matthew M; Stenson, Peter D PD; Cooper, David N DN; Wei, Xiaomu X; Keinan, Alon A; Schimenti, John C JC; Clark, Andrew G AG; Yu, Haiyuan H
Publication Date: 2019-09-12
Variant appearance in text: MYLIP: 1025A>G; N342S; rs9370867
Phenotypic severity in a family with MEND syndrome is directly associated with the accumulation of potentially functional variants of cholesterol homeostasis genes.
Molecular Genetics & Genomic Medicine
Barboza-Cerda, María Carmen MC; Barboza-Quintana, Oralia O; Martínez-Aldape, Gerardo G; Garza-Guajardo, Raquel R; Déctor, Miguel Angel MA
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Publication Date: 2019-03-20
Variant appearance in text: MYLIP: N342S; rs9370867
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.
Cell Death & Disease
Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D
Publication Date: 2019-02-27
Variant appearance in text: MYLIP: 1025A>G; rs9370867
Identifying Extrinsic versus Intrinsic Drivers of Variation in Cell Behavior in Human iPSC Lines from Healthy Donors.
Cell Reports
Vigilante, Alessandra A; Laddach, Anna A; Moens, Nathalie N; Meleckyte, Ruta R; Leha, Andreas A; Ghahramani, Arsham A; Culley, Oliver J OJ; Kathuria, Annie A; Hurling, Chloe C; Vickers, Alice A; Wiseman, Erika E; Tewary, Mukul M; Zandstra, Peter W PW; , ; Durbin, Richard R; Fraternali, Franca F; Stegle, Oliver O; Birney, Ewan E; Luscombe, Nicholas M NM; Danovi, Davide D; Watt, Fiona M FM
X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family.
Scientific Reports
Khan, Muhammad Jaseem MJ; Pollock, Nijole N; Jiang, Huaiyang H; Castro, Carlos C; Nazli, Rubina R; Ahmed, Jawad J; Basit, Sulman S; Rajkovic, Aleksandar A; Yatsenko, Alexander N AN
Publication Date: 2018-11-02
Variant appearance in text: MYLIP: N342S; rs9370867
Uncovering the complex genetics of human character.
Molecular Psychiatry
Zwir, Igor I; Arnedo, Javier J; Del-Val, Coral C; Pulkki-Råback, Laura L; Konte, Bettina B; Yang, Sarah S SS; Romero-Zaliz, Rocio R; Hintsanen, Mirka M; Cloninger, Kevin M KM; Garcia, Danilo D; Svrakic, Dragan M DM; Rozsa, Sandor S; Martinez, Maribel M; Lyytikäinen, Leo-Pekka LP; Giegling, Ina I; Kähönen, Mika M; Hernandez-Cuervo, Helena H; Seppälä, Ilkka I; Raitoharju, Emma E; de Erausquin, Gabriel A GA; Raitakari, Olli O; Rujescu, Dan D; Postolache, Teodor T TT; Sung, Joohon J; Keltikangas-Järvinen, Liisa L; Lehtimäki, Terho T; Cloninger, C Robert CR
Publication Date: 2020-10
Variant appearance in text: MYLIP: 1025A>G; Asn342Ser; rs9370867
Uncovering the complex genetics of human temperament.
Molecular Psychiatry
Zwir, Igor I; Arnedo, Javier J; Del-Val, Coral C; Pulkki-Råback, Laura L; Konte, Bettina B; Yang, Sarah S SS; Romero-Zaliz, Rocio R; Hintsanen, Mirka M; Cloninger, Kevin M KM; Garcia, Danilo D; Svrakic, Dragan M DM; Rozsa, Sandor S; Martinez, Maribel M; Lyytikäinen, Leo-Pekka LP; Giegling, Ina I; Kähönen, Mika M; Hernandez-Cuervo, Helena H; Seppälä, Ilkka I; Raitoharju, Emma E; de Erausquin, Gabriel A GA; Raitakari, Olli O; Rujescu, Dan D; Postolache, Teodor T TT; Sung, Joohon J; Keltikangas-Järvinen, Liisa L; Lehtimäki, Terho T; Cloninger, C Robert CR
Publication Date: 2020-10
Variant appearance in text: MYLIP: 1025A>G; Asn342Ser; rs9370867
Inactivation of the E3 Ubiquitin Ligase IDOL Attenuates Diet-Induced Obesity and Metabolic Dysfunction in Mice.
Arteriosclerosis, Thrombosis, And Vascular Biology
van Loon, Nienke M NM; Ottenhoff, Roelof R; Kooijman, Sander S; Moeton, Martina M; Scheij, Saskia S; Roscam Abbing, Reinout L P RLP; Gijbels, Marion J J MJJ; Levels, Johannes H M JHM; Sorrentino, Vincenzo V; Berbée, Jimmy F P JFP; Rensen, Patrick C N PCN; Zelcer, Noam N
Roles of fasting and postprandial blood glucose in the effect of type 2 diabetes on central arterial stiffness: a 5-year prospective community-based analysis.
Diabetology & Metabolic Syndrome
Fu, Shihui S; Chen, Wenji W; Luo, Leiming L; Ye, Ping P
Analysis with the exome array identifies multiple new independent variants in lipid loci.
Human Molecular Genetics
Kanoni, Stavroula S; Masca, Nicholas G D NG; Stirrups, Kathleen E KE; Varga, Tibor V TV; Warren, Helen R HR; Scott, Robert A RA; Southam, Lorraine L; Zhang, Weihua W; Yaghootkar, Hanieh H; Müller-Nurasyid, Martina M; Couto Alves, Alexessander A; Strawbridge, Rona J RJ; Lataniotis, Lazaros L; An Hashim, Nikman N; Besse, Céline C; Boland, Anne A; Braund, Peter S PS; Connell, John M JM; Dominiczak, Anna A; Farmaki, Aliki-Eleni AE; Franks, Stephen S; Grallert, Harald H; Jansson, Jan-Håkan JH; Karaleftheri, Maria M; Keinänen-Kiukaanniemi, Sirkka S; Matchan, Angela A; Pasko, Dorota D; Peters, Annette A; Poulter, Neil N; Rayner, Nigel W NW; Renström, Frida F; Rolandsson, Olov O; Sabater-Lleal, Maria M; Sennblad, Bengt B; Sever, Peter P; Shields, Denis D; Silveira, Angela A; Stanton, Alice V AV; Strauch, Konstantin K; Tomaszewski, Maciej M; Tsafantakis, Emmanouil E; Waldenberger, Melanie M; Blakemore, Alexandra I F AI; Dedoussis, George G; Escher, Stefan A SA; Kooner, Jaspal S JS; McCarthy, Mark I MI; Palmer, Colin N A CN; , ; Hamsten, Anders A; Caulfield, Mark J MJ; Frayling, Timothy M TM; Tobin, Martin D MD; Jarvelin, Marjo-Riitta MR; Zeggini, Eleftheria E; Gieger, Christian C; Chambers, John C JC; Wareham, Nick J NJ; Munroe, Patricia B PB; Franks, Paul W PW; Samani, Nilesh J NJ; Deloukas, Panos P